Wall clock time and date at job start Sat Apr 11 2020 05:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37781 * 119.90108 * 2 1 4 4 C 1.39696 * 119.89730 * 180.26976 * 3 2 1 5 5 C 1.47574 * 120.13831 * 179.73996 * 4 3 2 6 6 O 1.21580 * 120.00092 * 179.73031 * 5 4 3 7 7 N 1.34783 * 119.99894 * 359.72805 * 5 4 3 8 8 C 1.46492 * 119.99766 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47191 * 180.02562 * 8 7 5 10 10 H 1.08995 * 110.91132 * 308.90411 * 9 8 7 11 11 C 1.54907 * 111.00367 * 72.80172 * 9 8 7 12 12 N 1.47430 * 104.83058 * 155.08461 * 11 9 8 13 13 C 1.36939 * 125.64572 * 155.91145 * 12 11 9 14 14 H 1.07999 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99813 * 180.02562 * 13 12 11 16 16 N 1.31615 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47058 * 59.99766 * 17 15 13 19 19 H 1.48501 * 109.46876 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47099 * 299.99732 * 17 15 13 21 21 C 1.47014 * 108.70471 * 335.87277 * 12 11 9 22 22 C 1.54331 * 107.26998 * 1.05754 * 21 12 11 23 23 H 1.09000 * 110.87198 * 263.75468 * 22 21 12 24 24 O 1.42903 * 110.71518 * 140.55636 * 22 21 12 25 25 C 1.39941 * 119.71993 * 359.47155 * 4 3 2 26 26 F 1.35102 * 120.09427 * 180.29521 * 25 4 3 27 27 C 1.38154 * 119.80834 * 0.27227 * 25 4 3 28 28 C 1.38542 * 120.09062 * 359.97438 * 27 25 4 29 29 F 1.35099 * 119.85423 * 180.02562 * 28 27 25 30 30 H 1.08997 * 109.47749 * 270.25790 * 1 2 3 31 31 H 1.09000 * 109.46863 * 30.26319 * 1 2 3 32 32 H 1.09002 * 109.47232 * 150.25630 * 1 2 3 33 33 H 1.07994 * 120.05002 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99674 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.47186 * 60.00181 * 8 7 5 36 36 H 1.09007 * 109.47518 * 300.00316 * 8 7 5 37 37 H 1.08997 * 110.36868 * 273.92606 * 11 9 8 38 38 H 1.09001 * 110.36760 * 36.25145 * 11 9 8 39 39 H 0.97001 * 120.00199 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.88743 * 241.64099 * 21 12 11 41 41 H 1.08997 * 109.88268 * 120.47140 * 21 12 11 42 42 H 0.96700 * 114.00311 * 66.48015 * 24 22 21 43 43 H 1.07995 * 119.95561 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1944 0.0000 4 6 3.5908 1.1943 -0.0057 5 6 4.3318 2.4705 -0.0115 6 8 5.5476 2.4675 -0.0115 7 7 3.6608 3.6394 -0.0169 8 6 4.3964 4.9062 -0.0221 9 6 3.4050 6.0716 -0.0269 10 1 2.6659 5.9504 -0.8188 11 6 2.7195 6.2232 1.3539 12 7 2.3119 7.6385 1.4196 13 6 1.3006 8.1427 2.1930 14 1 0.7244 7.4835 2.8253 15 6 1.0154 9.5009 2.1636 16 7 1.7174 10.3041 1.3926 17 14 -0.3646 10.1885 3.2181 18 1 -0.0786 9.9129 4.6490 19 1 -0.4657 11.6549 3.0064 20 1 -1.6471 9.5443 2.8367 21 6 3.1716 8.4190 0.5179 22 6 4.1438 7.4296 -0.1587 23 1 5.0982 7.4021 0.3670 24 8 4.3355 7.7696 -1.5334 25 6 4.2846 -0.0210 -0.0002 26 9 5.6355 -0.0299 0.0004 27 6 3.5839 -1.2117 0.0052 28 6 2.1985 -1.2024 0.0056 29 9 1.5182 -2.3696 0.0114 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3634 -0.8923 -0.5098 33 1 1.6531 2.1292 0.0004 34 1 2.6908 3.6417 -0.0173 35 1 5.0236 4.9586 -0.9121 36 1 5.0229 4.9663 0.8679 37 1 1.8466 5.5737 1.4175 38 1 3.4233 5.9937 2.1541 39 1 1.5183 11.2533 1.3722 40 1 3.7332 9.1585 1.0888 41 1 2.5625 8.9154 -0.2376 42 1 4.7931 8.6103 -1.6706 43 1 4.1169 -2.1510 0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958172590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:46 Heat of formation + Delta-G solvation = -124.205328 kcal Electronic energy + Delta-G solvation = -29105.945342 eV Core-core repulsion = 24594.843431 eV Total energy + Delta-G solvation = -4511.101910 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.51218 -49.19729 -40.31287 -38.81629 -38.11089 -35.23431 -34.74450 -33.05461 -32.50067 -31.51512 -29.58303 -27.62051 -27.16101 -25.72314 -24.46817 -23.58458 -22.34296 -20.84026 -20.31657 -19.86418 -18.64230 -17.85442 -17.69898 -16.97132 -16.65325 -16.50249 -15.96705 -15.74460 -15.51598 -15.34661 -15.08971 -14.83644 -14.81741 -14.25119 -13.99429 -13.80019 -13.67937 -13.50286 -13.23765 -12.69733 -12.69221 -12.51625 -12.46820 -12.12767 -11.91526 -11.87882 -11.51822 -11.27346 -11.01320 -10.84273 -10.66576 -10.21467 -10.10230 -9.86502 -9.83311 -9.58349 -9.26435 -9.14180 -8.93261 -8.70265 -6.95430 -5.80242 -3.15121 0.12351 0.51926 2.37708 2.96177 3.24819 3.35112 3.36609 3.39459 3.40893 3.89854 4.00847 4.17175 4.28753 4.40049 4.59860 4.69680 4.93475 4.99367 5.12404 5.17703 5.20131 5.24737 5.32503 5.39136 5.45549 5.46806 5.62209 5.64756 5.68795 5.81098 5.96255 5.98499 6.15631 6.21369 6.27321 6.33985 6.47944 6.75803 7.34636 7.37400 7.44217 7.69718 8.06973 8.14187 8.15506 9.10963 9.71612 10.35605 11.31229 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.002604 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.415731 B =10752.011400 C =12304.754324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C -0.030 4.030 4 C -0.175 4.175 5 C 0.556 3.444 6 O -0.526 6.526 7 N -0.716 5.716 8 C 0.133 3.867 9 C -0.108 4.108 10 H 0.090 0.910 11 C 0.141 3.859 12 N -0.602 5.602 13 C -0.233 4.233 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.152 3.848 22 C 0.083 3.917 23 H 0.057 0.943 24 O -0.567 6.567 25 C 0.184 3.816 26 F -0.106 7.106 27 C -0.199 4.199 28 C 0.151 3.849 29 F -0.125 7.125 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.400 0.600 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.377 0.623 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.916 -20.589 -4.725 21.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.136 4.136 3 C -0.048 4.048 4 C -0.179 4.179 5 C 0.342 3.658 6 O -0.403 6.403 7 N -0.367 5.367 8 C 0.010 3.990 9 C -0.128 4.128 10 H 0.108 0.892 11 C 0.015 3.985 12 N -0.329 5.329 13 C -0.361 4.361 14 H 0.097 0.903 15 C -0.203 4.203 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.027 3.973 22 C 0.023 3.977 23 H 0.075 0.925 24 O -0.372 6.372 25 C 0.163 3.837 26 F -0.084 7.084 27 C -0.219 4.219 28 C 0.132 3.868 29 F -0.103 7.103 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.223 0.777 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.423 -20.940 -4.769 21.523 hybrid contribution -0.754 0.745 0.688 1.263 sum 0.669 -20.195 -4.081 20.614 Atomic orbital electron populations 1.20777 0.88889 1.04021 1.03526 1.19921 0.97947 0.91205 1.04555 1.21037 0.91654 0.98291 0.93867 1.20173 0.94260 0.93319 1.10153 1.17816 0.87214 0.83270 0.77459 1.90854 1.12905 1.87347 1.49184 1.45914 1.10542 1.05670 1.74607 1.21442 0.94306 0.80657 1.02589 1.22620 0.97481 0.92474 1.00234 0.89169 1.21630 0.96291 0.88299 0.92301 1.44297 1.37736 1.00989 1.49922 1.19013 1.07555 0.91710 1.17800 0.90297 1.24819 0.99615 0.96064 0.99801 1.69926 1.41730 1.03717 1.41554 0.86169 0.81558 0.77984 0.79856 1.21095 1.21552 1.21088 1.21826 0.91042 0.91229 0.93227 1.23121 0.97675 0.94852 0.82075 0.92486 1.86417 1.81908 1.43548 1.25295 1.17223 0.77769 0.92066 0.96618 1.91637 1.27180 1.97094 1.92444 1.20992 0.93065 0.99017 1.08815 1.17313 0.88872 0.81312 0.99344 1.91536 1.79687 1.45874 1.93212 0.90169 0.90188 0.90823 0.83284 0.76408 0.90869 0.91030 0.93966 0.95850 0.93580 0.93629 0.92372 0.77657 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.66 9.82 36.01 0.35 -0.31 16 2 C -0.14 -1.04 5.88 -104.61 -0.62 -1.66 16 3 C -0.03 -0.25 9.18 -39.20 -0.36 -0.60 16 4 C -0.17 -1.93 5.88 -104.91 -0.62 -2.55 16 5 C 0.56 7.67 7.76 -12.45 -0.10 7.58 16 6 O -0.53 -9.23 15.34 5.30 0.08 -9.15 16 7 N -0.72 -8.88 5.45 -61.33 -0.33 -9.22 16 8 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 9 C -0.11 -1.77 2.77 -88.47 -0.25 -2.02 16 10 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 11 C 0.14 2.67 6.65 -2.53 -0.02 2.65 16 12 N -0.60 -14.63 3.39 -170.07 -0.58 -15.21 16 13 C -0.23 -6.23 10.28 -15.06 -0.15 -6.39 16 14 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 15 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 16 N -0.92 -26.26 10.31 55.49 0.57 -25.69 16 17 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 C 0.15 3.51 5.15 -3.06 -0.02 3.50 16 22 C 0.08 1.49 3.80 -24.90 -0.09 1.40 16 23 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 24 O -0.57 -9.53 13.39 -35.23 -0.47 -10.00 16 25 C 0.18 2.05 7.28 -38.97 -0.28 1.77 16 26 F -0.11 -1.42 15.55 2.25 0.04 -1.38 16 27 C -0.20 -1.74 9.99 -39.50 -0.39 -2.13 16 28 C 0.15 1.27 7.24 -39.29 -0.28 0.98 16 29 F -0.12 -1.05 16.46 2.25 0.04 -1.01 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.07 0.40 7.63 -51.93 -0.40 0.01 16 33 H 0.15 0.91 6.40 -52.49 -0.34 0.57 16 34 H 0.40 3.99 6.50 -40.82 -0.27 3.73 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.08 7.96 -51.92 -0.41 0.66 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.02 0.45 7.91 -51.93 -0.41 0.04 16 39 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.05 1.16 7.51 -51.93 -0.39 0.77 16 41 H 0.06 1.52 7.29 -51.93 -0.38 1.14 16 42 H 0.38 4.90 9.12 45.56 0.42 5.32 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -33.17 366.27 -7.77 -40.94 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.67 Total: 4.96 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -2.94 Total: 3.83 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.34 Total: -50.12 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.39 Total: -19.15 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.07 Total: -2.39 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.17 -7.77 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.264 kcal (2) G-P(sol) polarization free energy of solvation -33.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds