Wall clock time and date at job start Sat Apr 11 2020 05:57:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37781 * 119.90108 * 2 1 4 4 C 1.39696 * 119.89730 * 180.26976 * 3 2 1 5 5 C 1.47574 * 120.13831 * 179.73996 * 4 3 2 6 6 O 1.21580 * 120.00092 * 179.73031 * 5 4 3 7 7 N 1.34783 * 119.99894 * 359.72805 * 5 4 3 8 8 C 1.46492 * 119.99766 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47191 * 180.02562 * 8 7 5 10 10 H 1.08995 * 110.91132 * 308.90411 * 9 8 7 11 11 C 1.54907 * 111.00367 * 72.80172 * 9 8 7 12 12 N 1.47430 * 104.83058 * 155.08461 * 11 9 8 13 13 C 1.36939 * 125.64572 * 155.91145 * 12 11 9 14 14 H 1.07999 * 119.99814 * 359.97438 * 13 12 11 15 15 C 1.38811 * 119.99813 * 180.02562 * 13 12 11 16 16 N 1.31615 * 119.99933 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99854 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47058 * 59.99766 * 17 15 13 19 19 H 1.48501 * 109.46876 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47099 * 299.99732 * 17 15 13 21 21 C 1.47014 * 108.70471 * 335.87277 * 12 11 9 22 22 C 1.54331 * 107.26998 * 1.05754 * 21 12 11 23 23 H 1.09000 * 110.87198 * 263.75468 * 22 21 12 24 24 O 1.42903 * 110.71518 * 140.55636 * 22 21 12 25 25 C 1.39941 * 119.71993 * 359.47155 * 4 3 2 26 26 F 1.35102 * 120.09427 * 180.29521 * 25 4 3 27 27 C 1.38154 * 119.80834 * 0.27227 * 25 4 3 28 28 C 1.38542 * 120.09062 * 359.97438 * 27 25 4 29 29 F 1.35099 * 119.85423 * 180.02562 * 28 27 25 30 30 H 1.08997 * 109.47749 * 270.25790 * 1 2 3 31 31 H 1.09000 * 109.46863 * 30.26319 * 1 2 3 32 32 H 1.09002 * 109.47232 * 150.25630 * 1 2 3 33 33 H 1.07994 * 120.05002 * 0.02562 * 3 2 1 34 34 H 0.96998 * 119.99674 * 359.97438 * 7 5 4 35 35 H 1.09006 * 109.47186 * 60.00181 * 8 7 5 36 36 H 1.09007 * 109.47518 * 300.00316 * 8 7 5 37 37 H 1.08997 * 110.36868 * 273.92606 * 11 9 8 38 38 H 1.09001 * 110.36760 * 36.25145 * 11 9 8 39 39 H 0.97001 * 120.00199 * 180.02562 * 16 15 13 40 40 H 1.08999 * 109.88743 * 241.64099 * 21 12 11 41 41 H 1.08997 * 109.88268 * 120.47140 * 21 12 11 42 42 H 0.96700 * 114.00311 * 66.48015 * 24 22 21 43 43 H 1.07995 * 119.95561 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1944 0.0000 4 6 3.5908 1.1943 -0.0057 5 6 4.3318 2.4705 -0.0115 6 8 5.5476 2.4675 -0.0115 7 7 3.6608 3.6394 -0.0169 8 6 4.3964 4.9062 -0.0221 9 6 3.4050 6.0716 -0.0269 10 1 2.6659 5.9504 -0.8188 11 6 2.7195 6.2232 1.3539 12 7 2.3119 7.6385 1.4196 13 6 1.3006 8.1427 2.1930 14 1 0.7244 7.4835 2.8253 15 6 1.0154 9.5009 2.1636 16 7 1.7174 10.3041 1.3926 17 14 -0.3646 10.1885 3.2181 18 1 -0.0786 9.9129 4.6490 19 1 -0.4657 11.6549 3.0064 20 1 -1.6471 9.5443 2.8367 21 6 3.1716 8.4190 0.5179 22 6 4.1438 7.4296 -0.1587 23 1 5.0982 7.4021 0.3670 24 8 4.3355 7.7696 -1.5334 25 6 4.2846 -0.0210 -0.0002 26 9 5.6355 -0.0299 0.0004 27 6 3.5839 -1.2117 0.0052 28 6 2.1985 -1.2024 0.0056 29 9 1.5182 -2.3696 0.0114 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3634 -0.8923 -0.5098 33 1 1.6531 2.1292 0.0004 34 1 2.6908 3.6417 -0.0173 35 1 5.0236 4.9586 -0.9121 36 1 5.0229 4.9663 0.8679 37 1 1.8466 5.5737 1.4175 38 1 3.4233 5.9937 2.1541 39 1 1.5183 11.2533 1.3722 40 1 3.7332 9.1585 1.0888 41 1 2.5625 8.9154 -0.2376 42 1 4.7931 8.6103 -1.6706 43 1 4.1169 -2.1510 0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958172590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:45 Heat of formation + Delta-G solvation = -147.674657 kcal Electronic energy + Delta-G solvation = -29106.963048 eV Core-core repulsion = 24594.843431 eV Total energy + Delta-G solvation = -4512.119617 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.17463 -50.08379 -41.29165 -39.98352 -39.30171 -36.63892 -36.17329 -34.11098 -33.68129 -32.58998 -31.07921 -29.27391 -27.73531 -27.28521 -25.68225 -24.71042 -23.23502 -22.24744 -21.73495 -21.14051 -19.43301 -19.00045 -18.59072 -18.55662 -18.03688 -17.27891 -17.08895 -16.83844 -16.56409 -16.35451 -16.20857 -16.01586 -15.71857 -15.57322 -15.53435 -14.73494 -14.61653 -14.38011 -14.26752 -14.22049 -14.00864 -13.69702 -13.48496 -13.19304 -13.08693 -12.99202 -12.67071 -12.62246 -12.53370 -12.40586 -12.32742 -11.91086 -11.78642 -11.51560 -11.14408 -10.80598 -10.70662 -10.35446 -10.13702 -9.69924 -8.92089 -7.84755 -5.21196 -0.64252 -0.15636 1.48405 1.51081 1.52124 1.57200 1.94099 2.38489 2.49724 2.65779 3.17159 3.23707 3.35151 3.35485 3.47402 3.57785 3.58758 3.72460 3.90258 3.94718 4.16474 4.39926 4.41875 4.44803 4.50570 4.62443 4.64414 4.66437 4.74795 4.79155 4.81953 4.89092 4.96104 5.11162 5.20108 5.21996 5.36190 5.43900 5.50246 5.56020 5.72697 6.17839 6.38809 6.88988 7.05581 7.08479 7.75795 8.38977 9.25193 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013566 B = 0.002604 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.415731 B =10752.011400 C =12304.754324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.127 4.127 3 C -0.021 4.021 4 C -0.188 4.188 5 C 0.557 3.443 6 O -0.570 6.570 7 N -0.705 5.705 8 C 0.146 3.854 9 C -0.089 4.089 10 H 0.092 0.908 11 C 0.138 3.862 12 N -0.625 5.625 13 C -0.242 4.242 14 H 0.089 0.911 15 C -0.067 4.067 16 N -0.952 5.952 17 Si 0.979 3.021 18 H -0.277 1.277 19 H -0.298 1.298 20 H -0.274 1.274 21 C 0.161 3.839 22 C 0.095 3.905 23 H 0.074 0.926 24 O -0.570 6.570 25 C 0.161 3.839 26 F -0.126 7.126 27 C -0.192 4.192 28 C 0.152 3.848 29 F -0.123 7.123 30 H 0.089 0.911 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.174 0.826 34 H 0.414 0.586 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.029 0.971 39 H 0.246 0.754 40 H 0.011 0.989 41 H 0.020 0.980 42 H 0.393 0.607 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -22.458 -4.603 22.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.128 4.128 3 C -0.039 4.039 4 C -0.192 4.192 5 C 0.344 3.656 6 O -0.450 6.450 7 N -0.357 5.357 8 C 0.022 3.978 9 C -0.108 4.108 10 H 0.110 0.890 11 C 0.013 3.987 12 N -0.352 5.352 13 C -0.371 4.371 14 H 0.107 0.893 15 C -0.260 4.260 16 N -0.601 5.601 17 Si 0.807 3.193 18 H -0.203 1.203 19 H -0.225 1.225 20 H -0.200 1.200 21 C 0.035 3.965 22 C 0.035 3.965 23 H 0.091 0.909 24 O -0.377 6.377 25 C 0.140 3.860 26 F -0.104 7.104 27 C -0.211 4.211 28 C 0.132 3.868 29 F -0.101 7.101 30 H 0.107 0.893 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.191 0.809 34 H 0.252 0.748 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.056 0.944 40 H 0.029 0.971 41 H 0.039 0.961 42 H 0.242 0.758 43 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.236 -22.844 -4.651 23.314 hybrid contribution -0.286 1.261 0.642 1.444 sum -0.522 -21.583 -4.008 21.958 Atomic orbital electron populations 1.20882 0.87115 1.04986 1.04376 1.20180 0.99126 0.90589 1.02910 1.21244 0.90360 0.99594 0.92716 1.20044 0.95262 0.91854 1.12037 1.18183 0.86814 0.84187 0.76370 1.90831 1.14892 1.87984 1.51333 1.45747 1.11173 1.04743 1.74037 1.21162 0.93613 0.80641 1.02342 1.22415 0.97400 0.92327 0.98703 0.88999 1.21819 0.97310 0.85797 0.93732 1.44600 1.37444 1.03447 1.49688 1.19467 1.07877 0.92106 1.17666 0.89308 1.25662 1.02195 0.96651 1.01460 1.70153 1.43352 1.03357 1.43260 0.85151 0.79137 0.76587 0.78454 1.20342 1.22454 1.19989 1.21581 0.90977 0.91921 0.91982 1.22896 0.97109 0.94121 0.82367 0.90866 1.86386 1.82204 1.44820 1.24252 1.17490 0.77138 0.93055 0.98305 1.91582 1.28723 1.97227 1.92888 1.21095 0.93348 0.98894 1.07768 1.17412 0.88757 0.81674 0.98980 1.91547 1.79561 1.45876 1.93130 0.89256 0.88743 0.90440 0.80893 0.74766 0.91126 0.91412 0.91959 0.95345 0.94449 0.97088 0.96140 0.75768 0.81050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 9.82 71.24 0.70 -0.23 16 2 C -0.13 -1.58 5.88 -19.86 -0.12 -1.69 16 3 C -0.02 -0.28 9.18 22.51 0.21 -0.08 16 4 C -0.19 -3.89 5.88 -20.05 -0.12 -4.01 16 5 C 0.56 14.77 7.76 86.71 0.67 15.44 16 6 O -0.57 -20.03 15.34 -3.97 -0.06 -20.09 16 7 N -0.70 -16.02 5.45 -466.22 -2.54 -18.57 16 8 C 0.15 3.94 5.13 86.38 0.44 4.38 16 9 C -0.09 -2.75 2.77 -9.40 -0.03 -2.77 16 10 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 11 C 0.14 4.98 6.65 86.85 0.58 5.56 16 12 N -0.62 -30.23 3.39 -691.99 -2.35 -32.57 16 13 C -0.24 -12.91 10.28 84.03 0.86 -12.05 16 14 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 15 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 16 N -0.95 -55.80 10.31 21.65 0.22 -55.58 16 17 Si 0.98 44.17 29.55 68.60 2.03 46.19 16 18 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 C 0.16 7.60 5.15 86.73 0.45 8.05 16 22 C 0.10 3.35 3.80 31.78 0.12 3.48 16 23 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 24 O -0.57 -18.51 13.39 -148.98 -1.99 -20.50 16 25 C 0.16 3.48 7.28 22.66 0.17 3.64 16 26 F -0.13 -3.44 15.55 44.97 0.70 -2.74 16 27 C -0.19 -3.05 9.99 22.32 0.22 -2.83 16 28 C 0.15 2.18 7.24 22.46 0.16 2.34 16 29 F -0.12 -1.76 16.46 44.97 0.74 -1.02 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.08 0.59 7.63 -2.39 -0.02 0.57 16 33 H 0.17 1.43 6.40 -2.91 -0.02 1.42 16 34 H 0.41 6.99 6.50 -92.71 -0.60 6.39 16 35 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.07 1.92 7.96 -2.38 -0.02 1.90 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.03 1.03 7.91 -2.39 -0.02 1.01 16 39 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 40 H 0.01 0.58 7.51 -2.39 -0.02 0.56 16 41 H 0.02 1.11 7.29 -2.39 -0.02 1.09 16 42 H 0.39 9.89 9.12 -74.06 -0.68 9.22 16 43 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -73.48 366.27 1.33 -72.15 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.20 Total: 16.70 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: 4.79 Total: 16.02 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.67 Total: -106.72 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -2.06 Total: -40.59 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 1.44 Total: -3.76 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Total: -73.48 1.33 -72.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.522 kcal (2) G-P(sol) polarization free energy of solvation -73.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds