Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37775 * 119.90460 * 2 1 4 4 C 1.39689 * 119.90229 * 180.29774 * 3 2 1 5 5 C 1.47572 * 120.14207 * 179.71660 * 4 3 2 6 6 O 1.21584 * 120.00173 * 179.72266 * 5 4 3 7 7 N 1.34776 * 120.00246 * 359.72837 * 5 4 3 8 8 C 1.46494 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47358 * 179.97438 * 8 7 5 10 10 H 1.09008 * 110.88445 * 57.42402 * 9 8 7 11 11 C 1.54908 * 111.00368 * 293.54522 * 9 8 7 12 12 N 1.47425 * 104.92961 * 204.85960 * 11 9 8 13 13 C 1.36938 * 125.65179 * 204.15650 * 12 11 9 14 14 H 1.08005 * 119.99558 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00146 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47204 * 119.99715 * 17 15 13 20 20 H 1.48508 * 109.46889 * 239.99519 * 17 15 13 21 21 C 1.47290 * 108.55742 * 24.15407 * 12 11 9 22 22 C 1.54325 * 107.30599 * 358.92448 * 21 12 11 23 23 H 1.08994 * 110.87038 * 96.25177 * 22 21 12 24 24 O 1.42903 * 110.72138 * 219.45307 * 22 21 12 25 25 C 1.39946 * 119.71920 * 359.44206 * 4 3 2 26 26 F 1.35098 * 120.09364 * 180.25335 * 25 4 3 27 27 C 1.38149 * 119.80789 * 0.27772 * 25 4 3 28 28 C 1.38548 * 120.09096 * 0.02562 * 27 25 4 29 29 F 1.35096 * 119.85537 * 179.97438 * 28 27 25 30 30 H 1.09003 * 109.47283 * 270.24091 * 1 2 3 31 31 H 1.09004 * 109.47168 * 30.24055 * 1 2 3 32 32 H 1.09002 * 109.47367 * 150.23682 * 1 2 3 33 33 H 1.08002 * 120.05229 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99840 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.47369 * 59.99227 * 8 7 5 36 36 H 1.09004 * 109.47192 * 299.99245 * 8 7 5 37 37 H 1.09002 * 110.36632 * 323.75356 * 11 9 8 38 38 H 1.08995 * 110.36781 * 85.96593 * 11 9 8 39 39 H 0.96999 * 120.00175 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.85762 * 239.50064 * 21 12 11 41 41 H 1.08995 * 110.00297 * 118.43011 * 21 12 11 42 42 H 0.96696 * 113.99847 * 293.52357 * 24 22 21 43 43 H 1.07995 * 119.95869 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1943 0.0000 4 6 3.5908 1.1943 -0.0063 5 6 4.3318 2.4704 -0.0126 6 8 5.5477 2.4674 -0.0130 7 7 3.6609 3.6393 -0.0179 8 6 4.3965 4.9061 -0.0248 9 6 3.4052 6.0715 -0.0304 10 1 2.7361 6.0167 0.8284 11 6 2.6049 6.1133 -1.3561 12 7 2.1861 7.5192 -1.5028 13 6 1.1100 7.9601 -2.2259 14 1 0.4858 7.2524 -2.7511 15 6 0.8222 9.3168 -2.2847 16 7 1.5833 10.1794 -1.6451 17 14 -0.6460 9.9182 -3.2706 18 1 -1.3349 8.7578 -3.8904 19 1 -1.5882 10.6308 -2.3707 20 1 -0.1819 10.8441 -4.3349 21 6 3.1186 8.3680 -0.7416 22 6 4.1478 7.4332 -0.0718 23 1 5.0544 7.3599 -0.6724 24 8 4.4540 7.8825 1.2497 25 6 4.2845 -0.0211 -0.0007 26 9 5.6355 -0.0300 -0.0016 27 6 3.5839 -1.2118 0.0051 28 6 2.1985 -1.2025 0.0050 29 9 1.5182 -2.3696 0.0102 30 1 -0.3634 0.0043 1.0277 31 1 -0.3634 0.8878 -0.5176 32 1 -0.3634 -0.8921 -0.5101 33 1 1.6532 2.1292 0.0004 34 1 2.6909 3.6417 -0.0179 35 1 5.0227 4.9579 -0.9154 36 1 5.0239 4.9668 0.8645 37 1 3.2392 5.8173 -2.1916 38 1 1.7329 5.4623 -1.2935 39 1 1.3820 11.1274 -1.6859 40 1 2.5739 8.9260 0.0200 41 1 3.6276 9.0586 -1.4139 42 1 4.9187 8.7300 1.2792 43 1 4.1168 -2.1510 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958172594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -124.519266 kcal Electronic energy + Delta-G solvation = -29140.260468 eV Core-core repulsion = 24629.144944 eV Total energy + Delta-G solvation = -4511.115524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.50860 -49.19557 -40.31285 -38.81664 -38.10403 -35.24776 -34.72762 -33.04941 -32.49436 -31.51122 -29.58396 -27.62243 -27.15539 -25.73688 -24.47474 -23.58502 -22.35002 -20.85423 -20.26923 -19.87552 -18.63979 -17.85646 -17.70246 -16.97618 -16.65519 -16.49920 -15.95747 -15.74836 -15.49347 -15.36215 -15.09561 -14.84378 -14.81155 -14.27507 -13.99271 -13.79024 -13.67422 -13.51575 -13.22120 -12.71087 -12.68927 -12.50677 -12.46901 -12.11851 -11.91150 -11.86951 -11.51838 -11.28358 -11.03519 -10.87874 -10.63761 -10.19986 -10.06930 -9.87846 -9.84067 -9.57974 -9.27302 -9.13872 -8.93039 -8.71883 -6.95944 -5.81226 -3.15875 0.12718 0.52374 2.38025 2.96277 3.25125 3.33939 3.36986 3.39283 3.41986 3.90257 4.01293 4.17729 4.28950 4.39397 4.60225 4.69266 4.93156 4.99984 5.13552 5.17842 5.20540 5.25349 5.32941 5.37868 5.44606 5.47088 5.61583 5.65363 5.69361 5.80588 5.95651 5.98036 6.14470 6.21877 6.28428 6.32787 6.46504 6.75133 7.33525 7.37627 7.43764 7.69274 8.07103 8.12898 8.14973 9.09727 9.70666 10.34895 11.30601 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.002663 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.308266 B =10512.355111 C =12197.976433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C -0.030 4.030 4 C -0.175 4.175 5 C 0.556 3.444 6 O -0.526 6.526 7 N -0.716 5.716 8 C 0.134 3.866 9 C -0.109 4.109 10 H 0.090 0.910 11 C 0.141 3.859 12 N -0.602 5.602 13 C -0.231 4.231 14 H 0.080 0.920 15 C -0.007 4.007 16 N -0.921 5.921 17 Si 0.914 3.086 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.290 1.290 21 C 0.151 3.849 22 C 0.083 3.917 23 H 0.057 0.943 24 O -0.567 6.567 25 C 0.184 3.816 26 F -0.106 7.106 27 C -0.199 4.199 28 C 0.151 3.849 29 F -0.125 7.125 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.073 0.927 37 H 0.024 0.976 38 H 0.041 0.959 39 H 0.253 0.747 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.377 0.623 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.345 -20.241 5.051 20.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.136 4.136 3 C -0.048 4.048 4 C -0.179 4.179 5 C 0.343 3.657 6 O -0.403 6.403 7 N -0.367 5.367 8 C 0.011 3.989 9 C -0.128 4.128 10 H 0.108 0.892 11 C 0.015 3.985 12 N -0.329 5.329 13 C -0.359 4.359 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.744 3.256 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.217 1.217 21 C 0.026 3.974 22 C 0.023 3.977 23 H 0.075 0.925 24 O -0.371 6.371 25 C 0.163 3.837 26 F -0.084 7.084 27 C -0.219 4.219 28 C 0.132 3.868 29 F -0.103 7.103 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.167 0.833 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.223 0.777 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.853 -20.602 5.150 21.316 hybrid contribution -0.802 0.710 -0.713 1.287 sum 1.051 -19.892 4.437 20.408 Atomic orbital electron populations 1.20780 0.88885 1.04128 1.03441 1.19920 0.97951 0.91200 1.04542 1.21037 0.91655 0.98300 0.93850 1.20170 0.94260 0.93314 1.10166 1.17815 0.87212 0.83271 0.77452 1.90854 1.12902 1.87350 1.49201 1.45910 1.10575 1.05663 1.74596 1.21426 0.94276 0.80661 1.02579 1.22622 0.97132 0.92428 1.00665 0.89155 1.21607 0.95667 0.88677 0.92589 1.44365 1.30768 0.99656 1.58150 1.19101 1.02354 0.91420 1.23021 0.90177 1.24822 0.99286 0.95850 1.00412 1.69945 1.39360 1.01460 1.46103 0.86023 0.81776 0.78584 0.79217 1.20448 1.21679 1.21698 1.21867 0.89440 0.91101 0.94990 1.23114 0.97161 0.94066 0.83330 0.92478 1.86419 1.80664 1.42149 1.27917 1.17221 0.77765 0.92066 0.96626 1.91635 1.27185 1.97094 1.92445 1.20991 0.93064 0.99014 1.08825 1.17316 0.88872 0.81313 0.99339 1.91535 1.79688 1.45874 1.93211 0.90248 0.90111 0.90795 0.83282 0.76380 0.91087 0.90871 0.95859 0.94037 0.93684 0.92365 0.93596 0.77655 0.82691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.82 36.01 0.35 -0.32 16 2 C -0.14 -1.05 5.88 -104.61 -0.62 -1.67 16 3 C -0.03 -0.25 9.18 -39.21 -0.36 -0.61 16 4 C -0.17 -1.94 5.88 -104.91 -0.62 -2.56 16 5 C 0.56 7.69 7.76 -12.45 -0.10 7.59 16 6 O -0.53 -9.23 15.34 5.29 0.08 -9.15 16 7 N -0.72 -8.91 5.36 -61.34 -0.33 -9.24 16 8 C 0.13 1.92 5.12 -4.05 -0.02 1.90 16 9 C -0.11 -1.78 2.83 -88.47 -0.25 -2.03 16 10 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 11 C 0.14 2.65 6.40 -2.53 -0.02 2.63 16 12 N -0.60 -14.58 3.40 -169.86 -0.58 -15.16 16 13 C -0.23 -6.16 10.28 -15.06 -0.15 -6.32 16 14 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 15 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 16 N -0.92 -26.21 10.33 55.49 0.57 -25.64 16 17 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 C 0.15 3.49 5.16 -2.92 -0.02 3.47 16 22 C 0.08 1.50 3.80 -24.90 -0.09 1.40 16 23 H 0.06 0.96 8.04 -51.93 -0.42 0.54 16 24 O -0.57 -9.52 13.39 -35.23 -0.47 -9.99 16 25 C 0.18 2.06 7.28 -38.97 -0.28 1.77 16 26 F -0.11 -1.42 15.55 2.25 0.04 -1.38 16 27 C -0.20 -1.74 9.99 -39.50 -0.39 -2.14 16 28 C 0.15 1.28 7.25 -39.29 -0.28 0.99 16 29 F -0.12 -1.06 16.46 2.25 0.04 -1.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 32 H 0.07 0.42 7.63 -51.93 -0.40 0.02 16 33 H 0.15 0.92 6.40 -52.49 -0.34 0.59 16 34 H 0.40 4.04 6.36 -40.82 -0.26 3.78 16 35 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.06 1.52 7.31 -51.93 -0.38 1.14 16 41 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 42 H 0.38 4.89 9.12 45.56 0.42 5.31 16 43 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -33.13 366.14 -7.78 -40.91 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -4.68 Total: 4.94 kcal Atomic # 6 Polarization: 6.78 SS G_CDS: -2.95 Total: 3.83 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.33 Total: -50.03 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.39 Total: -19.14 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.07 Total: -2.40 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.13 -7.78 -40.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.606 kcal (2) G-P(sol) polarization free energy of solvation -33.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds