Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37775 * 119.90460 * 2 1 4 4 C 1.39689 * 119.90229 * 180.29774 * 3 2 1 5 5 C 1.47572 * 120.14207 * 179.71660 * 4 3 2 6 6 O 1.21584 * 120.00173 * 179.72266 * 5 4 3 7 7 N 1.34776 * 120.00246 * 359.72837 * 5 4 3 8 8 C 1.46494 * 120.00390 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.47358 * 179.97438 * 8 7 5 10 10 H 1.09008 * 110.88445 * 57.42402 * 9 8 7 11 11 C 1.54908 * 111.00368 * 293.54522 * 9 8 7 12 12 N 1.47425 * 104.92961 * 204.85960 * 11 9 8 13 13 C 1.36938 * 125.65179 * 204.15650 * 12 11 9 14 14 H 1.08005 * 119.99558 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00146 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47204 * 119.99715 * 17 15 13 20 20 H 1.48508 * 109.46889 * 239.99519 * 17 15 13 21 21 C 1.47290 * 108.55742 * 24.15407 * 12 11 9 22 22 C 1.54325 * 107.30599 * 358.92448 * 21 12 11 23 23 H 1.08994 * 110.87038 * 96.25177 * 22 21 12 24 24 O 1.42903 * 110.72138 * 219.45307 * 22 21 12 25 25 C 1.39946 * 119.71920 * 359.44206 * 4 3 2 26 26 F 1.35098 * 120.09364 * 180.25335 * 25 4 3 27 27 C 1.38149 * 119.80789 * 0.27772 * 25 4 3 28 28 C 1.38548 * 120.09096 * 0.02562 * 27 25 4 29 29 F 1.35096 * 119.85537 * 179.97438 * 28 27 25 30 30 H 1.09003 * 109.47283 * 270.24091 * 1 2 3 31 31 H 1.09004 * 109.47168 * 30.24055 * 1 2 3 32 32 H 1.09002 * 109.47367 * 150.23682 * 1 2 3 33 33 H 1.08002 * 120.05229 * 0.02562 * 3 2 1 34 34 H 0.97004 * 119.99840 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.47369 * 59.99227 * 8 7 5 36 36 H 1.09004 * 109.47192 * 299.99245 * 8 7 5 37 37 H 1.09002 * 110.36632 * 323.75356 * 11 9 8 38 38 H 1.08995 * 110.36781 * 85.96593 * 11 9 8 39 39 H 0.96999 * 120.00175 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.85762 * 239.50064 * 21 12 11 41 41 H 1.08995 * 110.00297 * 118.43011 * 21 12 11 42 42 H 0.96696 * 113.99847 * 293.52357 * 24 22 21 43 43 H 1.07995 * 119.95869 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1943 0.0000 4 6 3.5908 1.1943 -0.0063 5 6 4.3318 2.4704 -0.0126 6 8 5.5477 2.4674 -0.0130 7 7 3.6609 3.6393 -0.0179 8 6 4.3965 4.9061 -0.0248 9 6 3.4052 6.0715 -0.0304 10 1 2.7361 6.0167 0.8284 11 6 2.6049 6.1133 -1.3561 12 7 2.1861 7.5192 -1.5028 13 6 1.1100 7.9601 -2.2259 14 1 0.4858 7.2524 -2.7511 15 6 0.8222 9.3168 -2.2847 16 7 1.5833 10.1794 -1.6451 17 14 -0.6460 9.9182 -3.2706 18 1 -1.3349 8.7578 -3.8904 19 1 -1.5882 10.6308 -2.3707 20 1 -0.1819 10.8441 -4.3349 21 6 3.1186 8.3680 -0.7416 22 6 4.1478 7.4332 -0.0718 23 1 5.0544 7.3599 -0.6724 24 8 4.4540 7.8825 1.2497 25 6 4.2845 -0.0211 -0.0007 26 9 5.6355 -0.0300 -0.0016 27 6 3.5839 -1.2118 0.0051 28 6 2.1985 -1.2025 0.0050 29 9 1.5182 -2.3696 0.0102 30 1 -0.3634 0.0043 1.0277 31 1 -0.3634 0.8878 -0.5176 32 1 -0.3634 -0.8921 -0.5101 33 1 1.6532 2.1292 0.0004 34 1 2.6909 3.6417 -0.0179 35 1 5.0227 4.9579 -0.9154 36 1 5.0239 4.9668 0.8645 37 1 3.2392 5.8173 -2.1916 38 1 1.7329 5.4623 -1.2935 39 1 1.3820 11.1274 -1.6859 40 1 2.5739 8.9260 0.0200 41 1 3.6276 9.0586 -1.4139 42 1 4.9187 8.7300 1.2792 43 1 4.1168 -2.1510 0.0098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958172594.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -147.910101 kcal Electronic energy + Delta-G solvation = -29141.274771 eV Core-core repulsion = 24629.144944 eV Total energy + Delta-G solvation = -4512.129827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.17443 -50.08414 -41.29519 -39.97828 -39.29701 -36.64406 -36.16609 -34.09879 -33.68060 -32.58859 -31.07669 -29.26939 -27.73470 -27.30005 -25.68287 -24.71658 -23.24998 -22.26636 -21.66258 -21.16165 -19.43493 -19.00684 -18.58550 -18.55797 -18.04356 -17.27804 -17.07295 -16.85159 -16.56769 -16.34411 -16.22893 -16.00975 -15.71897 -15.57117 -15.54346 -14.73824 -14.61880 -14.38959 -14.26822 -14.22058 -13.99364 -13.68094 -13.48548 -13.19703 -13.08646 -12.99338 -12.75006 -12.61967 -12.53465 -12.42281 -12.23917 -11.89118 -11.76991 -11.50824 -11.15110 -10.80866 -10.73119 -10.35460 -10.13790 -9.69833 -8.92081 -7.85178 -5.21304 -0.64219 -0.15554 1.48607 1.48948 1.52137 1.59160 1.93931 2.38534 2.49343 2.65821 3.17198 3.23573 3.35167 3.35528 3.47272 3.57856 3.58006 3.73514 3.89700 3.94895 4.15977 4.39869 4.41410 4.44719 4.50535 4.62248 4.64496 4.66504 4.74087 4.78642 4.82034 4.89030 4.96744 5.11283 5.20201 5.23009 5.35034 5.44083 5.49785 5.56085 5.72533 6.17343 6.38639 6.88902 7.05431 7.07951 7.75195 8.38921 9.25460 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013190 B = 0.002663 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.308266 B =10512.355111 C =12197.976433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.127 4.127 3 C -0.021 4.021 4 C -0.188 4.188 5 C 0.557 3.443 6 O -0.570 6.570 7 N -0.705 5.705 8 C 0.147 3.853 9 C -0.090 4.090 10 H 0.091 0.909 11 C 0.138 3.862 12 N -0.625 5.625 13 C -0.238 4.238 14 H 0.090 0.910 15 C -0.068 4.068 16 N -0.953 5.953 17 Si 0.978 3.022 18 H -0.261 1.261 19 H -0.294 1.294 20 H -0.296 1.296 21 C 0.160 3.840 22 C 0.096 3.904 23 H 0.074 0.926 24 O -0.570 6.570 25 C 0.161 3.839 26 F -0.126 7.126 27 C -0.192 4.192 28 C 0.152 3.848 29 F -0.123 7.123 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.173 0.827 34 H 0.414 0.586 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.029 0.971 38 H 0.063 0.937 39 H 0.246 0.754 40 H 0.020 0.980 41 H 0.011 0.989 42 H 0.393 0.607 43 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 -22.193 5.037 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.128 4.128 3 C -0.039 4.039 4 C -0.192 4.192 5 C 0.345 3.655 6 O -0.450 6.450 7 N -0.357 5.357 8 C 0.023 3.977 9 C -0.109 4.109 10 H 0.109 0.891 11 C 0.013 3.987 12 N -0.352 5.352 13 C -0.367 4.367 14 H 0.108 0.892 15 C -0.261 4.261 16 N -0.602 5.602 17 Si 0.806 3.194 18 H -0.185 1.185 19 H -0.221 1.221 20 H -0.223 1.223 21 C 0.035 3.965 22 C 0.035 3.965 23 H 0.092 0.908 24 O -0.377 6.377 25 C 0.140 3.860 26 F -0.104 7.104 27 C -0.211 4.211 28 C 0.132 3.868 29 F -0.101 7.101 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.191 0.809 34 H 0.252 0.748 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.038 0.962 41 H 0.030 0.970 42 H 0.242 0.758 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.209 -22.590 5.140 23.168 hybrid contribution -0.335 1.254 -0.696 1.473 sum -0.126 -21.335 4.443 21.794 Atomic orbital electron populations 1.20884 0.87126 1.04951 1.04411 1.20178 0.99121 0.90592 1.02907 1.21240 0.90372 0.99589 0.92728 1.20042 0.95252 0.91864 1.12040 1.18180 0.86813 0.84182 0.76368 1.90831 1.14877 1.87983 1.51338 1.45744 1.11183 1.04756 1.74035 1.21151 0.93587 0.80623 1.02350 1.22422 0.96893 0.92280 0.99330 0.89094 1.21798 0.96836 0.86211 0.93817 1.44667 1.30453 1.02159 1.57905 1.19543 1.02860 0.91765 1.22556 0.89178 1.25660 1.02101 0.96308 1.02020 1.70164 1.41038 1.01177 1.47794 0.85015 0.78677 0.78180 0.77489 1.18537 1.22139 1.22341 1.21626 0.89833 0.91633 0.93448 1.22894 0.96372 0.93531 0.83655 0.90844 1.86389 1.80881 1.43414 1.26987 1.17486 0.77138 0.93048 0.98303 1.91581 1.28718 1.97226 1.92887 1.21095 0.93340 0.98898 1.07762 1.17413 0.88760 0.81668 0.98979 1.91546 1.79562 1.45873 1.93129 0.89102 0.88842 0.90496 0.80927 0.74781 0.91471 0.91091 0.95312 0.91864 0.94489 0.96162 0.97040 0.75766 0.81040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 9.82 71.24 0.70 -0.24 16 2 C -0.13 -1.59 5.88 -19.86 -0.12 -1.71 16 3 C -0.02 -0.29 9.18 22.51 0.21 -0.08 16 4 C -0.19 -3.91 5.88 -20.05 -0.12 -4.02 16 5 C 0.56 14.78 7.76 86.71 0.67 15.46 16 6 O -0.57 -20.01 15.34 -3.98 -0.06 -20.07 16 7 N -0.70 -16.06 5.36 -466.25 -2.50 -18.56 16 8 C 0.15 3.95 5.12 86.38 0.44 4.39 16 9 C -0.09 -2.77 2.83 -9.40 -0.03 -2.79 16 10 H 0.09 2.85 8.14 -2.38 -0.02 2.83 16 11 C 0.14 4.93 6.40 86.85 0.56 5.48 16 12 N -0.62 -30.06 3.40 -691.30 -2.35 -32.42 16 13 C -0.24 -12.63 10.28 84.03 0.86 -11.77 16 14 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 15 C -0.07 -3.74 5.49 84.86 0.47 -3.27 16 16 N -0.95 -55.76 10.33 21.65 0.22 -55.54 16 17 Si 0.98 44.11 29.55 68.60 2.03 46.14 16 18 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 21 C 0.16 7.54 5.16 86.68 0.45 7.99 16 22 C 0.10 3.36 3.80 31.78 0.12 3.48 16 23 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 24 O -0.57 -18.52 13.39 -148.98 -1.99 -20.51 16 25 C 0.16 3.48 7.28 22.66 0.17 3.65 16 26 F -0.13 -3.44 15.55 44.97 0.70 -2.74 16 27 C -0.19 -3.06 9.99 22.32 0.22 -2.83 16 28 C 0.15 2.19 7.25 22.46 0.16 2.35 16 29 F -0.12 -1.77 16.46 44.97 0.74 -1.03 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 0.55 8.08 -2.39 -0.02 0.53 16 32 H 0.08 0.61 7.63 -2.39 -0.02 0.59 16 33 H 0.17 1.47 6.40 -2.91 -0.02 1.45 16 34 H 0.41 7.07 6.36 -92.71 -0.59 6.48 16 35 H 0.07 1.90 8.10 -2.39 -0.02 1.89 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.03 1.03 8.00 -2.39 -0.02 1.01 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.97 16 39 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 40 H 0.02 1.09 7.31 -2.38 -0.02 1.08 16 41 H 0.01 0.60 7.51 -2.39 -0.02 0.59 16 42 H 0.39 9.89 9.12 -74.06 -0.68 9.21 16 43 H 0.17 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -73.39 366.14 1.36 -72.03 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -0.19 Total: 16.61 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: 4.76 Total: 16.09 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -4.63 Total: -106.52 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -2.06 Total: -40.58 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 1.44 Total: -3.76 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.39 1.36 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172594.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.882 kcal (2) G-P(sol) polarization free energy of solvation -73.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds