Wall clock time and date at job start Sat Apr 11 2020 05:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37783 * 119.90627 * 2 1 4 4 C 1.39688 * 119.90493 * 180.27095 * 3 2 1 5 5 C 1.47570 * 120.14032 * 179.69608 * 4 3 2 6 6 O 1.21588 * 119.99988 * 179.73170 * 5 4 3 7 7 N 1.34770 * 120.00128 * 359.73416 * 5 4 3 8 8 C 1.46504 * 119.99929 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47255 * 179.97438 * 8 7 5 10 10 H 1.08998 * 110.88627 * 57.42732 * 9 8 7 11 11 C 1.54906 * 111.00525 * 293.55178 * 9 8 7 12 12 N 1.47428 * 104.83346 * 204.87480 * 11 9 8 13 13 C 1.36941 * 125.64931 * 204.08998 * 12 11 9 14 14 H 1.07997 * 119.99738 * 10.06029 * 13 12 11 15 15 C 1.38812 * 119.99917 * 190.05571 * 13 12 11 16 16 N 1.31616 * 120.00089 * 195.14817 * 15 13 12 17 17 Si 1.86800 * 119.99891 * 15.14905 * 15 13 12 18 18 H 1.48500 * 109.47302 * 54.48816 * 17 15 13 19 19 H 1.48502 * 109.47147 * 294.49056 * 17 15 13 20 20 H 1.48504 * 109.46982 * 174.49184 * 17 15 13 21 21 C 1.47022 * 108.70231 * 24.35316 * 12 11 9 22 22 C 1.54343 * 107.26379 * 358.58832 * 21 12 11 23 23 H 1.08993 * 110.84871 * 219.67080 * 22 21 12 24 24 O 1.42897 * 110.66628 * 96.51874 * 22 21 12 25 25 C 1.39937 * 119.71814 * 359.43373 * 4 3 2 26 26 F 1.35109 * 120.09922 * 180.29234 * 25 4 3 27 27 C 1.38154 * 119.80882 * 0.26810 * 25 4 3 28 28 C 1.38538 * 120.09222 * 0.02562 * 27 25 4 29 29 F 1.35098 * 119.85781 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.47575 * 270.30296 * 1 2 3 31 31 H 1.09002 * 109.46937 * 30.30051 * 1 2 3 32 32 H 1.08995 * 109.47453 * 150.29633 * 1 2 3 33 33 H 1.08004 * 120.04976 * 359.97438 * 3 2 1 34 34 H 0.97002 * 120.00269 * 359.97438 * 7 5 4 35 35 H 1.09010 * 109.47051 * 60.00527 * 8 7 5 36 36 H 1.08997 * 109.47589 * 300.00010 * 8 7 5 37 37 H 1.09008 * 110.36912 * 86.03711 * 11 9 8 38 38 H 1.08996 * 110.46356 * 323.76007 * 11 9 8 39 39 H 0.97005 * 120.00002 * 2.98123 * 16 15 13 40 40 H 1.09003 * 109.88013 * 118.12614 * 21 12 11 41 41 H 1.08998 * 109.88605 * 239.29588 * 21 12 11 42 42 H 0.96700 * 113.99862 * 66.41842 * 24 22 21 43 43 H 1.08002 * 119.95435 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1944 0.0000 4 6 3.5908 1.1943 -0.0057 5 6 4.3318 2.4705 -0.0125 6 8 5.5477 2.4675 -0.0126 7 7 3.6608 3.6393 -0.0186 8 6 4.3965 4.9062 -0.0248 9 6 3.4052 6.0716 -0.0316 10 1 2.7352 6.0169 0.8264 11 6 2.6062 6.1132 -1.3581 12 7 2.1889 7.5197 -1.5035 13 6 1.1146 7.9627 -2.2279 14 1 0.3984 7.2553 -2.6191 15 6 0.9460 9.3210 -2.4593 16 7 -0.2129 9.7772 -2.8846 17 14 2.3641 10.5012 -2.1670 18 1 3.5504 10.0503 -2.9381 19 1 2.6955 10.5282 -0.7197 20 1 1.9738 11.8636 -2.6109 21 6 3.1211 8.3685 -0.7471 22 6 4.1470 7.4337 -0.0720 23 1 4.3793 7.7763 0.9363 24 8 5.3364 7.3385 -0.8583 25 6 4.2845 -0.0210 0.0006 26 9 5.6356 -0.0299 0.0011 27 6 3.5839 -1.2117 0.0068 28 6 2.1986 -1.2025 0.0063 29 9 1.5182 -2.3696 0.0118 30 1 -0.3634 0.0054 1.0276 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3634 -0.8926 -0.5092 33 1 1.6532 2.1293 -0.0004 34 1 2.6908 3.6417 -0.0189 35 1 5.0235 4.9579 -0.9150 36 1 5.0230 4.9670 0.8650 37 1 1.7334 5.4631 -1.2958 38 1 3.2398 5.8171 -2.1941 39 1 -0.9620 9.1708 -2.9950 40 1 3.6308 9.0541 -1.4242 41 1 2.5778 8.9302 0.0128 42 1 5.8373 8.1637 -0.9154 43 1 4.1169 -2.1510 0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958172596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:53 Heat of formation + Delta-G solvation = -112.608967 kcal Electronic energy + Delta-G solvation = -29362.818904 eV Core-core repulsion = 24852.219849 eV Total energy + Delta-G solvation = -4510.599055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.52959 -49.21863 -40.35966 -39.04800 -38.37597 -35.25892 -34.89274 -33.07480 -32.54544 -31.68063 -30.05489 -28.21249 -27.18052 -26.01342 -24.39221 -23.39731 -22.32575 -21.17765 -20.46359 -19.92697 -18.66562 -17.97646 -17.83146 -17.72910 -16.81165 -16.52146 -16.00604 -15.77058 -15.61471 -15.50813 -15.16413 -15.02230 -14.84240 -14.41314 -14.08402 -13.85457 -13.80140 -13.61265 -13.50816 -13.21540 -12.79034 -12.69889 -12.51460 -12.45505 -12.12866 -11.92839 -11.88590 -11.24794 -11.20669 -10.89578 -10.64408 -10.26443 -10.05981 -10.01201 -9.60646 -9.29655 -9.17313 -9.02684 -8.96002 -8.77781 -7.12342 -6.38423 -3.29235 0.09996 0.49650 2.35161 2.91937 3.22182 3.30284 3.34419 3.43265 3.64209 3.87618 3.98478 4.15244 4.24562 4.34777 4.54891 4.58318 4.70691 4.95837 5.00148 5.05564 5.10588 5.15504 5.18014 5.22758 5.30409 5.40309 5.42967 5.52980 5.62134 5.65152 5.66971 5.73326 6.01826 6.06363 6.19188 6.25422 6.27905 6.39009 6.46742 6.68699 7.32644 7.56675 7.84367 8.03889 8.25485 8.96302 9.48152 10.14372 11.12729 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.002700 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.077528 B =10367.780619 C =11852.694300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.135 4.135 3 C -0.030 4.030 4 C -0.175 4.175 5 C 0.557 3.443 6 O -0.524 6.524 7 N -0.719 5.719 8 C 0.140 3.860 9 C -0.111 4.111 10 H 0.094 0.906 11 C 0.144 3.856 12 N -0.609 5.609 13 C -0.323 4.323 14 H 0.079 0.921 15 C -0.023 4.023 16 N -0.927 5.927 17 Si 1.073 2.927 18 H -0.297 1.297 19 H -0.288 1.288 20 H -0.301 1.301 21 C 0.082 3.918 22 C 0.102 3.898 23 H 0.068 0.932 24 O -0.558 6.558 25 C 0.184 3.816 26 F -0.106 7.106 27 C -0.199 4.199 28 C 0.152 3.848 29 F -0.125 7.125 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.399 0.601 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.042 0.958 38 H 0.031 0.969 39 H 0.262 0.738 40 H 0.036 0.964 41 H 0.053 0.947 42 H 0.378 0.622 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -19.828 9.859 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.136 4.136 3 C -0.049 4.049 4 C -0.180 4.180 5 C 0.343 3.657 6 O -0.401 6.401 7 N -0.371 5.371 8 C 0.017 3.983 9 C -0.131 4.131 10 H 0.112 0.888 11 C 0.018 3.982 12 N -0.336 5.336 13 C -0.451 4.451 14 H 0.097 0.903 15 C -0.222 4.222 16 N -0.569 5.569 17 Si 0.907 3.093 18 H -0.225 1.225 19 H -0.216 1.216 20 H -0.229 1.229 21 C -0.043 4.043 22 C 0.042 3.958 23 H 0.086 0.914 24 O -0.363 6.363 25 C 0.163 3.837 26 F -0.083 7.083 27 C -0.219 4.219 28 C 0.132 3.868 29 F -0.103 7.103 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.235 0.765 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.071 0.929 42 H 0.225 0.775 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 6.248 -18.839 9.618 22.056 hybrid contribution -0.641 -1.277 0.068 1.430 sum 5.606 -20.116 9.686 23.020 Atomic orbital electron populations 1.20779 0.88874 1.04168 1.03426 1.19924 0.97957 0.91205 1.04516 1.21028 0.91651 0.98274 0.93932 1.20167 0.94249 0.93328 1.10214 1.17800 0.87213 0.83240 0.77466 1.90861 1.12874 1.87324 1.49036 1.45949 1.10513 1.05834 1.74797 1.21206 0.93852 0.79875 1.03342 1.22724 0.96760 0.92720 1.00865 0.88784 1.21595 0.95536 0.87977 0.93088 1.44743 1.30802 1.00392 1.57702 1.20162 0.99776 0.93817 1.31296 0.90299 1.25853 1.02331 0.95416 0.98648 1.70906 1.00792 1.36937 1.48222 0.83808 0.74408 0.75427 0.75669 1.22549 1.21572 1.22938 1.22755 0.92045 0.94404 0.95141 1.22714 0.84910 0.94988 0.93204 0.91430 1.86459 1.37228 1.38639 1.74023 1.17222 0.77770 0.92063 0.96615 1.91640 1.27171 1.97094 1.92444 1.20996 0.93064 0.99028 1.08781 1.17315 0.88874 0.81318 0.99295 1.91538 1.79682 1.45859 1.93200 0.90250 0.90128 0.90757 0.83354 0.76511 0.89746 0.91302 0.93969 0.95128 0.92828 0.94650 0.92929 0.77489 0.82661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.68 9.82 36.00 0.35 -0.32 16 2 C -0.13 -1.05 5.88 -104.61 -0.62 -1.66 16 3 C -0.03 -0.25 9.18 -39.21 -0.36 -0.61 16 4 C -0.18 -1.93 5.88 -104.91 -0.62 -2.54 16 5 C 0.56 7.58 7.76 -12.46 -0.10 7.49 16 6 O -0.52 -9.14 15.34 5.29 0.08 -9.06 16 7 N -0.72 -8.66 5.36 -61.33 -0.33 -8.99 16 8 C 0.14 1.94 4.74 -4.04 -0.02 1.92 16 9 C -0.11 -1.64 3.03 -88.47 -0.27 -1.91 16 10 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 11 C 0.14 2.70 6.40 -2.53 -0.02 2.68 16 12 N -0.61 -14.28 3.33 -170.06 -0.57 -14.84 16 13 C -0.32 -9.01 10.56 -15.06 -0.16 -9.17 16 14 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 15 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 16 N -0.93 -28.65 13.71 55.49 0.76 -27.89 16 17 Si 1.07 26.13 24.52 -169.99 -4.17 21.96 16 18 H -0.30 -7.03 6.82 56.52 0.39 -6.65 16 19 H -0.29 -6.26 5.41 56.52 0.31 -5.96 16 20 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 21 C 0.08 1.67 4.38 -3.05 -0.01 1.66 16 22 C 0.10 1.59 4.09 -24.89 -0.10 1.49 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 O -0.56 -8.48 12.09 -35.23 -0.43 -8.90 16 25 C 0.18 2.04 7.28 -38.98 -0.28 1.76 16 26 F -0.11 -1.41 15.55 2.25 0.04 -1.37 16 27 C -0.20 -1.73 9.99 -39.50 -0.39 -2.12 16 28 C 0.15 1.27 7.25 -39.29 -0.28 0.99 16 29 F -0.12 -1.05 16.46 2.25 0.04 -1.01 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.07 0.42 7.63 -51.93 -0.40 0.03 16 33 H 0.15 0.90 6.40 -52.48 -0.34 0.57 16 34 H 0.40 3.84 6.36 -40.82 -0.26 3.58 16 35 H 0.08 1.37 7.43 -51.92 -0.39 0.98 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.74 8.14 -51.92 -0.42 0.32 16 38 H 0.03 0.62 8.01 -51.93 -0.42 0.20 16 39 H 0.26 7.97 8.73 -40.82 -0.36 7.61 16 40 H 0.04 0.77 3.82 -51.93 -0.20 0.58 16 41 H 0.05 1.11 6.70 -51.93 -0.35 0.76 16 42 H 0.38 4.25 9.12 45.56 0.42 4.67 16 43 H 0.16 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 356.52 15.07 5.37 5.37 Total: -1.00 -35.34 356.52 -6.74 -42.08 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -4.57 Total: 3.77 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.97 Total: -1.12 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.13 Total: -51.72 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.34 Total: -17.96 kcal Atomic # 9 Polarization: -2.46 SS G_CDS: 0.07 Total: -2.38 kcal Atomic # 14 Polarization: 26.13 SS G_CDS: -4.17 Total: 21.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.34 -6.74 -42.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.531 kcal (2) G-P(sol) polarization free energy of solvation -35.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds