Wall clock time and date at job start Sat Apr 11 2020 05:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37783 * 119.90627 * 2 1 4 4 C 1.39688 * 119.90493 * 180.27095 * 3 2 1 5 5 C 1.47570 * 120.14032 * 179.69608 * 4 3 2 6 6 O 1.21588 * 119.99988 * 179.73170 * 5 4 3 7 7 N 1.34770 * 120.00128 * 359.73416 * 5 4 3 8 8 C 1.46504 * 119.99929 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47255 * 179.97438 * 8 7 5 10 10 H 1.08998 * 110.88627 * 57.42732 * 9 8 7 11 11 C 1.54906 * 111.00525 * 293.55178 * 9 8 7 12 12 N 1.47428 * 104.83346 * 204.87480 * 11 9 8 13 13 C 1.36941 * 125.64931 * 204.08998 * 12 11 9 14 14 H 1.07997 * 119.99738 * 10.06029 * 13 12 11 15 15 C 1.38812 * 119.99917 * 190.05571 * 13 12 11 16 16 N 1.31616 * 120.00089 * 195.14817 * 15 13 12 17 17 Si 1.86800 * 119.99891 * 15.14905 * 15 13 12 18 18 H 1.48500 * 109.47302 * 54.48816 * 17 15 13 19 19 H 1.48502 * 109.47147 * 294.49056 * 17 15 13 20 20 H 1.48504 * 109.46982 * 174.49184 * 17 15 13 21 21 C 1.47022 * 108.70231 * 24.35316 * 12 11 9 22 22 C 1.54343 * 107.26379 * 358.58832 * 21 12 11 23 23 H 1.08993 * 110.84871 * 219.67080 * 22 21 12 24 24 O 1.42897 * 110.66628 * 96.51874 * 22 21 12 25 25 C 1.39937 * 119.71814 * 359.43373 * 4 3 2 26 26 F 1.35109 * 120.09922 * 180.29234 * 25 4 3 27 27 C 1.38154 * 119.80882 * 0.26810 * 25 4 3 28 28 C 1.38538 * 120.09222 * 0.02562 * 27 25 4 29 29 F 1.35098 * 119.85781 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.47575 * 270.30296 * 1 2 3 31 31 H 1.09002 * 109.46937 * 30.30051 * 1 2 3 32 32 H 1.08995 * 109.47453 * 150.29633 * 1 2 3 33 33 H 1.08004 * 120.04976 * 359.97438 * 3 2 1 34 34 H 0.97002 * 120.00269 * 359.97438 * 7 5 4 35 35 H 1.09010 * 109.47051 * 60.00527 * 8 7 5 36 36 H 1.08997 * 109.47589 * 300.00010 * 8 7 5 37 37 H 1.09008 * 110.36912 * 86.03711 * 11 9 8 38 38 H 1.08996 * 110.46356 * 323.76007 * 11 9 8 39 39 H 0.97005 * 120.00002 * 2.98123 * 16 15 13 40 40 H 1.09003 * 109.88013 * 118.12614 * 21 12 11 41 41 H 1.08998 * 109.88605 * 239.29588 * 21 12 11 42 42 H 0.96700 * 113.99862 * 66.41842 * 24 22 21 43 43 H 1.08002 * 119.95435 * 180.02562 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1939 1.1944 0.0000 4 6 3.5908 1.1943 -0.0057 5 6 4.3318 2.4705 -0.0125 6 8 5.5477 2.4675 -0.0126 7 7 3.6608 3.6393 -0.0186 8 6 4.3965 4.9062 -0.0248 9 6 3.4052 6.0716 -0.0316 10 1 2.7352 6.0169 0.8264 11 6 2.6062 6.1132 -1.3581 12 7 2.1889 7.5197 -1.5035 13 6 1.1146 7.9627 -2.2279 14 1 0.3984 7.2553 -2.6191 15 6 0.9460 9.3210 -2.4593 16 7 -0.2129 9.7772 -2.8846 17 14 2.3641 10.5012 -2.1670 18 1 3.5504 10.0503 -2.9381 19 1 2.6955 10.5282 -0.7197 20 1 1.9738 11.8636 -2.6109 21 6 3.1211 8.3685 -0.7471 22 6 4.1470 7.4337 -0.0720 23 1 4.3793 7.7763 0.9363 24 8 5.3364 7.3385 -0.8583 25 6 4.2845 -0.0210 0.0006 26 9 5.6356 -0.0299 0.0011 27 6 3.5839 -1.2117 0.0068 28 6 2.1986 -1.2025 0.0063 29 9 1.5182 -2.3696 0.0118 30 1 -0.3634 0.0054 1.0276 31 1 -0.3633 0.8873 -0.5185 32 1 -0.3634 -0.8926 -0.5092 33 1 1.6532 2.1293 -0.0004 34 1 2.6908 3.6417 -0.0189 35 1 5.0235 4.9579 -0.9150 36 1 5.0230 4.9670 0.8650 37 1 1.7334 5.4631 -1.2958 38 1 3.2398 5.8171 -2.1941 39 1 -0.9620 9.1708 -2.9950 40 1 3.6308 9.0541 -1.4242 41 1 2.5778 8.9302 0.0128 42 1 5.8373 8.1637 -0.9154 43 1 4.1169 -2.1510 0.0121 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958172596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:52 Heat of formation + Delta-G solvation = -139.865520 kcal Electronic energy + Delta-G solvation = -29364.000836 eV Core-core repulsion = 24852.219849 eV Total energy + Delta-G solvation = -4511.780987 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.20124 -50.10753 -41.33329 -40.24486 -39.37376 -36.57396 -36.24642 -34.28175 -33.71435 -32.80916 -31.39028 -29.71525 -27.77020 -27.46972 -25.47489 -24.60778 -23.21930 -22.74749 -21.61268 -21.17562 -19.75836 -19.44754 -18.78198 -18.62302 -18.15395 -17.29931 -17.20615 -16.94802 -16.58286 -16.34360 -16.20495 -15.96713 -15.87858 -15.65432 -15.61189 -15.11665 -14.88259 -14.69069 -14.31826 -14.27412 -14.22451 -14.05266 -13.53813 -13.48506 -13.08364 -13.03550 -12.68218 -12.59597 -12.54515 -12.30022 -12.13485 -11.78437 -11.59581 -11.26467 -11.09343 -10.94790 -10.54200 -10.37296 -10.14958 -9.72676 -9.10289 -8.64732 -5.46578 -0.67029 -0.18783 1.36934 1.49741 1.50793 1.71904 1.93861 2.35971 2.55094 2.62906 3.08858 3.14371 3.20715 3.26583 3.33029 3.45319 3.54532 3.68793 3.74802 3.88432 3.92273 4.28240 4.32462 4.39242 4.46723 4.52694 4.60846 4.62695 4.63517 4.72441 4.73775 4.77952 4.86893 4.93417 5.03410 5.07492 5.16508 5.24537 5.34014 5.52853 5.53193 6.09933 6.36333 6.81919 6.88337 7.04379 7.44033 8.08733 8.88762 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.002700 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.077528 B =10367.780619 C =11852.694300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.127 4.127 3 C -0.022 4.022 4 C -0.188 4.188 5 C 0.556 3.444 6 O -0.569 6.569 7 N -0.708 5.708 8 C 0.152 3.848 9 C -0.094 4.094 10 H 0.120 0.880 11 C 0.139 3.861 12 N -0.630 5.630 13 C -0.310 4.310 14 H 0.050 0.950 15 C -0.083 4.083 16 N -0.966 5.966 17 Si 1.110 2.890 18 H -0.290 1.290 19 H -0.242 1.242 20 H -0.317 1.317 21 C 0.068 3.932 22 C 0.111 3.889 23 H 0.111 0.889 24 O -0.570 6.570 25 C 0.161 3.839 26 F -0.126 7.126 27 C -0.191 4.191 28 C 0.152 3.848 29 F -0.123 7.123 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.172 0.828 34 H 0.413 0.587 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.051 0.949 38 H 0.014 0.986 39 H 0.248 0.752 40 H 0.029 0.971 41 H 0.052 0.948 42 H 0.395 0.605 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -20.598 11.937 24.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.129 4.129 3 C -0.040 4.040 4 C -0.192 4.192 5 C 0.344 3.656 6 O -0.449 6.449 7 N -0.361 5.361 8 C 0.028 3.972 9 C -0.113 4.113 10 H 0.138 0.862 11 C 0.014 3.986 12 N -0.357 5.357 13 C -0.439 4.439 14 H 0.068 0.932 15 C -0.276 4.276 16 N -0.611 5.611 17 Si 0.939 3.061 18 H -0.218 1.218 19 H -0.167 1.167 20 H -0.246 1.246 21 C -0.056 4.056 22 C 0.051 3.949 23 H 0.128 0.872 24 O -0.378 6.378 25 C 0.140 3.860 26 F -0.104 7.104 27 C -0.210 4.210 28 C 0.132 3.868 29 F -0.101 7.101 30 H 0.111 0.889 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.189 0.811 34 H 0.250 0.750 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.046 0.954 41 H 0.070 0.930 42 H 0.246 0.754 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.715 -19.647 11.730 23.847 hybrid contribution -0.866 -1.193 -0.643 1.609 sum 5.849 -20.840 11.087 24.320 Atomic orbital electron populations 1.20877 0.87199 1.04835 1.04463 1.20176 0.99079 0.90650 1.02953 1.21223 0.90418 0.99523 0.92866 1.20062 0.95216 0.91999 1.11966 1.18165 0.86815 0.84217 0.76437 1.90835 1.14858 1.87980 1.51264 1.45822 1.11127 1.05059 1.74053 1.20971 0.93454 0.80111 1.02625 1.22645 0.96553 0.92985 0.99158 0.86196 1.21735 0.96176 0.85730 0.94928 1.44842 1.30400 1.02975 1.57509 1.20082 1.00248 0.93298 1.30235 0.93244 1.27123 1.03629 0.97747 0.99074 1.71009 1.01571 1.36980 1.51493 0.83395 0.71821 0.72527 0.78398 1.21806 1.16687 1.24645 1.22996 0.92554 0.95288 0.94788 1.22734 0.83801 0.93853 0.94471 0.87157 1.86450 1.36974 1.40159 1.74246 1.17487 0.77155 0.93045 0.98288 1.91585 1.28678 1.97225 1.92884 1.21101 0.93311 0.98935 1.07693 1.17407 0.88779 0.81647 0.98982 1.91548 1.79564 1.45853 1.93126 0.88930 0.89101 0.90522 0.81066 0.74952 0.92255 0.90300 0.93043 0.96811 0.94303 0.95360 0.93024 0.75446 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.82 71.23 0.70 -0.31 16 2 C -0.13 -1.65 5.88 -19.86 -0.12 -1.77 16 3 C -0.02 -0.31 9.18 22.51 0.21 -0.10 16 4 C -0.19 -3.93 5.88 -20.05 -0.12 -4.05 16 5 C 0.56 14.67 7.76 86.71 0.67 15.34 16 6 O -0.57 -19.93 15.34 -3.99 -0.06 -19.99 16 7 N -0.71 -15.62 5.36 -466.22 -2.50 -18.12 16 8 C 0.15 3.83 4.74 86.38 0.41 4.24 16 9 C -0.09 -2.46 3.03 -9.40 -0.03 -2.49 16 10 H 0.12 2.59 8.14 -2.39 -0.02 2.58 16 11 C 0.14 4.99 6.40 86.85 0.56 5.54 16 12 N -0.63 -28.71 3.33 -691.94 -2.30 -31.01 16 13 C -0.31 -17.44 10.56 84.03 0.89 -16.55 16 14 H 0.05 2.99 8.06 -2.91 -0.02 2.97 16 15 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 16 N -0.97 -61.38 13.71 21.65 0.30 -61.08 16 17 Si 1.11 52.19 24.52 68.60 1.68 53.87 16 18 H -0.29 -13.11 6.82 99.48 0.68 -12.43 16 19 H -0.24 -9.54 5.41 99.48 0.54 -9.00 16 20 H -0.32 -15.60 7.11 99.48 0.71 -14.89 16 21 C 0.07 2.58 4.38 86.74 0.38 2.96 16 22 C 0.11 3.03 4.09 31.79 0.13 3.16 16 23 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 24 O -0.57 -15.48 12.09 -148.98 -1.80 -17.28 16 25 C 0.16 3.50 7.28 22.66 0.17 3.66 16 26 F -0.13 -3.43 15.55 44.97 0.70 -2.73 16 27 C -0.19 -3.07 9.99 22.32 0.22 -2.85 16 28 C 0.15 2.23 7.25 22.46 0.16 2.39 16 29 F -0.12 -1.80 16.46 44.97 0.74 -1.06 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 32 H 0.08 0.66 7.63 -2.39 -0.02 0.64 16 33 H 0.17 1.52 6.40 -2.91 -0.02 1.50 16 34 H 0.41 6.77 6.36 -92.71 -0.59 6.18 16 35 H 0.06 1.84 7.43 -2.38 -0.02 1.82 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.01 0.55 8.01 -2.39 -0.02 0.53 16 39 H 0.25 15.76 8.73 -92.70 -0.81 14.95 16 40 H 0.03 1.15 3.82 -2.39 -0.01 1.14 16 41 H 0.05 1.98 6.70 -2.39 -0.02 1.96 16 42 H 0.40 7.50 9.12 -74.06 -0.68 6.82 16 43 H 0.17 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -79.93 356.52 1.04 -78.89 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -0.41 Total: 13.74 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 4.70 Total: 4.78 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -4.50 Total: -110.22 kcal Atomic # 8 Polarization: -35.41 SS G_CDS: -1.86 Total: -37.28 kcal Atomic # 9 Polarization: -5.22 SS G_CDS: 1.44 Total: -3.78 kcal Atomic # 14 Polarization: 52.19 SS G_CDS: 1.68 Total: 53.87 kcal Total: -79.93 1.04 -78.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958172596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.977 kcal (2) G-P(sol) polarization free energy of solvation -79.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds