Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38305 * 119.80964 * 2 1 4 4 C 1.38215 * 120.19008 * 179.72777 * 3 2 1 5 5 F 1.35103 * 120.09768 * 180.27867 * 4 3 2 6 6 C 1.39898 * 119.80687 * 0.51944 * 4 3 2 7 7 C 1.47542 * 120.19120 * 179.77384 * 6 4 3 8 8 O 1.21590 * 119.99996 * 269.98241 * 7 6 4 9 9 N 1.34774 * 120.00073 * 89.97799 * 7 6 4 10 10 C 1.46496 * 120.00203 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.89171 * 302.57529 * 11 10 9 13 13 C 1.54914 * 111.00240 * 66.45753 * 11 10 9 14 14 N 1.47424 * 104.83175 * 155.08318 * 13 11 10 15 15 C 1.36938 * 125.64897 * 155.83090 * 14 13 11 16 16 H 1.08000 * 119.99637 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00280 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00254 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47152 * 60.00491 * 19 17 15 21 21 H 1.48499 * 109.47311 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46927 * 300.00305 * 19 17 15 23 23 C 1.47025 * 108.70380 * 335.87185 * 14 13 11 24 24 C 1.54326 * 107.26959 * 1.05744 * 23 14 13 25 25 H 1.08995 * 110.71658 * 263.82867 * 24 23 14 26 26 O 1.42900 * 110.71663 * 140.56007 * 24 23 14 27 27 C 1.39904 * 119.62345 * 359.75706 * 6 4 3 28 28 F 1.35103 * 120.09948 * 179.97438 * 27 6 4 29 29 C 1.38218 * 119.80628 * 359.97438 * 27 6 4 30 30 H 1.09002 * 109.47152 * 269.72688 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72788 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72769 * 1 2 3 33 33 H 1.08007 * 119.90137 * 359.97438 * 3 2 1 34 34 H 0.96999 * 119.99822 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47714 * 300.00411 * 10 9 7 36 36 H 1.08998 * 109.47143 * 60.00443 * 10 9 7 37 37 H 1.09000 * 110.36494 * 273.91974 * 13 11 10 38 38 H 1.08995 * 110.36880 * 36.24607 * 13 11 10 39 39 H 0.96989 * 120.00160 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.88066 * 120.47940 * 23 14 13 41 41 H 1.09004 * 109.87946 * 241.48524 * 23 14 13 42 42 H 0.96698 * 114.00368 * 66.47632 * 26 24 23 43 43 H 1.07997 * 119.90586 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2000 0.0000 4 6 3.5767 1.2092 0.0057 5 9 4.2464 2.3826 0.0114 6 6 4.2802 0.0000 0.0004 7 6 5.7556 -0.0001 0.0014 8 8 6.3642 0.0046 -1.0512 9 7 6.4287 -0.0051 1.1690 10 6 7.8937 -0.0058 1.1700 11 6 8.4027 -0.0113 2.6128 12 1 8.0154 0.8450 3.1649 13 6 8.0421 -1.3396 3.3237 14 7 9.0494 -1.4821 4.3907 15 6 8.8950 -2.2065 5.5424 16 1 7.9722 -2.7362 5.7275 17 6 9.9249 -2.2610 6.4715 18 7 11.0497 -1.6159 6.2457 19 14 9.7145 -3.2498 8.0423 20 1 9.4635 -4.6732 7.7013 21 1 10.9490 -3.1469 8.8611 22 1 8.5635 -2.7151 8.8134 23 6 10.2469 -0.7167 4.0139 24 6 9.9533 -0.0462 2.6553 25 1 10.3482 -0.6466 1.8357 26 8 10.4901 1.2776 2.6184 27 6 3.5767 -1.2093 -0.0054 28 9 4.2463 -2.3827 -0.0110 29 6 2.1945 -1.2001 -0.0054 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5096 33 1 1.6498 2.1327 -0.0004 34 1 5.9432 -0.0091 2.0087 35 1 8.2571 -0.8937 0.6527 36 1 8.2577 0.8862 0.6601 37 1 7.0415 -1.2811 3.7520 38 1 8.1087 -2.1738 2.6254 39 1 11.7692 -1.6536 6.8950 40 1 10.4521 0.0447 4.7665 41 1 11.1015 -1.3870 3.9222 42 1 11.4562 1.3112 2.6428 43 1 1.6499 -2.1326 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958243515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -125.737515 kcal Electronic energy + Delta-G solvation = -29374.818511 eV Core-core repulsion = 24863.650160 eV Total energy + Delta-G solvation = -4511.168351 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.38499 -49.34742 -40.13552 -38.99822 -38.14768 -35.19723 -34.66846 -33.30966 -32.17274 -30.86142 -29.88041 -28.27238 -27.44096 -25.53511 -23.78905 -23.37723 -22.66477 -20.98444 -20.24833 -19.96277 -18.30909 -17.83588 -17.75312 -16.99374 -16.73997 -16.47070 -16.13462 -15.79295 -15.64106 -15.52455 -15.12384 -14.80792 -14.50338 -14.16571 -14.05303 -13.95180 -13.62469 -13.60648 -13.15889 -12.66467 -12.46953 -12.46122 -12.31210 -12.28604 -12.01086 -11.92671 -11.49506 -11.24478 -11.00227 -10.81515 -10.63205 -10.27606 -10.07869 -9.83268 -9.81838 -9.30579 -9.23311 -9.22711 -9.06118 -8.67076 -6.92031 -5.77135 -3.11806 0.32108 0.52017 2.34918 2.74489 3.03481 3.35005 3.37519 3.41600 3.43027 3.86328 4.06035 4.37643 4.37815 4.44533 4.58493 4.72293 4.87130 4.98829 5.06048 5.07403 5.18515 5.30281 5.33511 5.42013 5.48006 5.50264 5.53398 5.65921 5.78865 5.83928 5.98014 6.01765 6.18898 6.23740 6.30949 6.37007 6.50828 6.80029 7.37289 7.37835 7.47460 7.72906 8.03102 8.17490 8.18901 9.14213 9.74709 10.39007 11.34455 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.002767 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.540906 B =10116.866517 C =11279.824778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 C -0.169 4.169 4 C 0.169 3.831 5 F -0.120 7.120 6 C -0.204 4.204 7 C 0.565 3.435 8 O -0.524 6.524 9 N -0.708 5.708 10 C 0.132 3.868 11 C -0.108 4.108 12 H 0.090 0.910 13 C 0.141 3.859 14 N -0.602 5.602 15 C -0.231 4.231 16 H 0.079 0.921 17 C -0.007 4.007 18 N -0.923 5.923 19 Si 0.915 3.085 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.152 3.848 24 C 0.083 3.917 25 H 0.057 0.943 26 O -0.566 6.566 27 C 0.171 3.829 28 F -0.118 7.118 29 C -0.168 4.168 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.149 0.851 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.376 0.624 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.434 4.924 -13.122 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.014 4.014 3 C -0.187 4.187 4 C 0.149 3.851 5 F -0.098 7.098 6 C -0.209 4.209 7 C 0.348 3.652 8 O -0.400 6.400 9 N -0.358 5.358 10 C 0.009 3.991 11 C -0.128 4.128 12 H 0.109 0.891 13 C 0.015 3.985 14 N -0.329 5.329 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.204 4.204 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.027 3.973 24 C 0.023 3.977 25 H 0.075 0.925 26 O -0.371 6.371 27 C 0.151 3.849 28 F -0.096 7.096 29 C -0.187 4.187 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.167 0.833 34 H 0.239 0.761 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.223 0.777 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -19.390 5.029 -13.697 24.267 hybrid contribution 0.688 -0.712 1.327 1.655 sum -18.702 4.317 -12.371 22.835 Atomic orbital electron populations 1.20909 0.89208 1.03896 1.03518 1.19689 0.96974 0.91075 0.93641 1.21021 0.91452 1.00026 1.06245 1.17246 0.89644 0.79855 0.98358 1.91592 1.80606 1.44500 1.93081 1.19949 0.95230 0.92689 1.13052 1.17696 0.85728 0.77172 0.84576 1.90827 1.68983 1.48967 1.31185 1.46015 1.08260 1.73505 1.08063 1.21467 0.77749 1.02580 0.97303 1.22615 0.95478 1.00723 0.93973 0.89131 1.21611 0.93701 0.92545 0.90667 1.44296 1.12033 1.57843 1.18746 1.19021 1.00051 1.22908 0.93963 0.90307 1.24820 0.96188 1.00403 0.98954 1.69928 1.05133 1.45961 1.35985 0.86162 0.76868 0.79687 0.82814 1.21099 1.21555 1.21098 1.21833 0.90061 0.94922 0.90531 1.23114 0.92101 0.83270 0.99185 0.92474 1.86423 1.25571 1.27799 1.97309 1.17260 0.89654 0.79914 0.98111 1.91606 1.80571 1.44415 1.93005 1.21039 0.91482 1.00060 1.06104 0.89819 0.90490 0.90518 0.83327 0.76075 0.91025 0.90820 0.93983 0.95810 0.93602 0.92399 0.93561 0.77687 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.40 10.00 36.01 0.36 -0.04 16 2 C -0.01 -0.09 5.88 -104.57 -0.62 -0.70 16 3 C -0.17 -1.28 9.65 -39.56 -0.38 -1.66 16 4 C 0.17 1.84 7.29 -38.97 -0.28 1.56 16 5 F -0.12 -1.47 16.83 2.25 0.04 -1.44 16 6 C -0.20 -2.56 5.64 -104.86 -0.59 -3.16 16 7 C 0.56 8.78 6.54 -12.47 -0.08 8.70 16 8 O -0.52 -9.94 17.11 5.29 0.09 -9.85 16 9 N -0.71 -10.25 5.40 -61.35 -0.33 -10.58 16 10 C 0.13 2.08 5.12 -4.05 -0.02 2.06 16 11 C -0.11 -1.91 2.83 -88.47 -0.25 -2.16 16 12 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 13 C 0.14 2.83 6.41 -2.53 -0.02 2.82 16 14 N -0.60 -15.17 3.39 -170.07 -0.58 -15.75 16 15 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 16 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 17 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 18 N -0.92 -26.81 10.31 55.49 0.57 -26.24 16 19 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C 0.15 3.62 5.15 -3.06 -0.02 3.61 16 24 C 0.08 1.57 3.80 -24.90 -0.09 1.48 16 25 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 26 O -0.57 -9.95 13.39 -35.23 -0.47 -10.42 16 27 C 0.17 1.90 7.29 -38.97 -0.28 1.62 16 28 F -0.12 -1.52 16.83 2.25 0.04 -1.48 16 29 C -0.17 -1.31 9.65 -39.56 -0.38 -1.69 16 30 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 32 H 0.08 0.18 8.08 -51.93 -0.42 -0.24 16 33 H 0.15 0.77 8.06 -52.48 -0.42 0.34 16 34 H 0.40 5.14 8.32 -40.82 -0.34 4.80 16 35 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.55 7.30 -51.93 -0.38 1.18 16 41 H 0.05 1.21 7.50 -51.93 -0.39 0.82 16 42 H 0.38 5.13 9.12 45.56 0.42 5.54 16 43 H 0.15 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 372.52 15.07 5.61 5.61 Total: -1.00 -34.35 372.52 -7.83 -42.17 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -4.87 Total: 5.49 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: -2.91 Total: 5.60 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.34 Total: -52.56 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.38 Total: -20.27 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.08 Total: -2.91 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.35 -7.83 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.563 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds