Wall clock time and date at job start Sat Apr 11 2020 05:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38305 * 119.80964 * 2 1 4 4 C 1.38215 * 120.19008 * 179.72777 * 3 2 1 5 5 F 1.35103 * 120.09768 * 180.27867 * 4 3 2 6 6 C 1.39898 * 119.80687 * 0.51944 * 4 3 2 7 7 C 1.47542 * 120.19120 * 179.77384 * 6 4 3 8 8 O 1.21590 * 119.99996 * 269.98241 * 7 6 4 9 9 N 1.34774 * 120.00073 * 89.97799 * 7 6 4 10 10 C 1.46496 * 120.00203 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47269 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.89171 * 302.57529 * 11 10 9 13 13 C 1.54914 * 111.00240 * 66.45753 * 11 10 9 14 14 N 1.47424 * 104.83175 * 155.08318 * 13 11 10 15 15 C 1.36938 * 125.64897 * 155.83090 * 14 13 11 16 16 H 1.08000 * 119.99637 * 0.02562 * 15 14 13 17 17 C 1.38812 * 120.00280 * 179.97438 * 15 14 13 18 18 N 1.31625 * 119.99954 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00254 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47152 * 60.00491 * 19 17 15 21 21 H 1.48499 * 109.47311 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46927 * 300.00305 * 19 17 15 23 23 C 1.47025 * 108.70380 * 335.87185 * 14 13 11 24 24 C 1.54326 * 107.26959 * 1.05744 * 23 14 13 25 25 H 1.08995 * 110.71658 * 263.82867 * 24 23 14 26 26 O 1.42900 * 110.71663 * 140.56007 * 24 23 14 27 27 C 1.39904 * 119.62345 * 359.75706 * 6 4 3 28 28 F 1.35103 * 120.09948 * 179.97438 * 27 6 4 29 29 C 1.38218 * 119.80628 * 359.97438 * 27 6 4 30 30 H 1.09002 * 109.47152 * 269.72688 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.72788 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.72769 * 1 2 3 33 33 H 1.08007 * 119.90137 * 359.97438 * 3 2 1 34 34 H 0.96999 * 119.99822 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47714 * 300.00411 * 10 9 7 36 36 H 1.08998 * 109.47143 * 60.00443 * 10 9 7 37 37 H 1.09000 * 110.36494 * 273.91974 * 13 11 10 38 38 H 1.08995 * 110.36880 * 36.24607 * 13 11 10 39 39 H 0.96989 * 120.00160 * 179.97438 * 18 17 15 40 40 H 1.08999 * 109.88066 * 120.47940 * 23 14 13 41 41 H 1.09004 * 109.87946 * 241.48524 * 23 14 13 42 42 H 0.96698 * 114.00368 * 66.47632 * 26 24 23 43 43 H 1.07997 * 119.90586 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1946 1.2000 0.0000 4 6 3.5767 1.2092 0.0057 5 9 4.2464 2.3826 0.0114 6 6 4.2802 0.0000 0.0004 7 6 5.7556 -0.0001 0.0014 8 8 6.3642 0.0046 -1.0512 9 7 6.4287 -0.0051 1.1690 10 6 7.8937 -0.0058 1.1700 11 6 8.4027 -0.0113 2.6128 12 1 8.0154 0.8450 3.1649 13 6 8.0421 -1.3396 3.3237 14 7 9.0494 -1.4821 4.3907 15 6 8.8950 -2.2065 5.5424 16 1 7.9722 -2.7362 5.7275 17 6 9.9249 -2.2610 6.4715 18 7 11.0497 -1.6159 6.2457 19 14 9.7145 -3.2498 8.0423 20 1 9.4635 -4.6732 7.7013 21 1 10.9490 -3.1469 8.8611 22 1 8.5635 -2.7151 8.8134 23 6 10.2469 -0.7167 4.0139 24 6 9.9533 -0.0462 2.6553 25 1 10.3482 -0.6466 1.8357 26 8 10.4901 1.2776 2.6184 27 6 3.5767 -1.2093 -0.0054 28 9 4.2463 -2.3827 -0.0110 29 6 2.1945 -1.2001 -0.0054 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3633 -0.8875 -0.5181 32 1 -0.3633 0.8925 -0.5096 33 1 1.6498 2.1327 -0.0004 34 1 5.9432 -0.0091 2.0087 35 1 8.2571 -0.8937 0.6527 36 1 8.2577 0.8862 0.6601 37 1 7.0415 -1.2811 3.7520 38 1 8.1087 -2.1738 2.6254 39 1 11.7692 -1.6536 6.8950 40 1 10.4521 0.0447 4.7665 41 1 11.1015 -1.3870 3.9222 42 1 11.4562 1.3112 2.6428 43 1 1.6499 -2.1326 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958243515.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:55 Heat of formation + Delta-G solvation = -150.798368 kcal Electronic energy + Delta-G solvation = -29375.905232 eV Core-core repulsion = 24863.650160 eV Total energy + Delta-G solvation = -4512.255071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.23889 -50.21515 -41.24089 -40.06167 -39.51144 -36.69836 -36.23041 -34.25701 -33.74734 -31.54024 -31.50850 -29.51375 -28.69028 -27.20353 -25.31129 -24.09651 -23.60252 -22.37425 -21.79723 -21.40928 -19.42795 -18.85316 -18.63293 -18.55007 -18.24312 -17.56584 -17.06954 -16.92511 -16.85281 -16.51811 -16.33450 -16.20430 -15.72596 -15.72128 -15.29618 -14.72421 -14.68813 -14.44094 -14.37623 -14.19722 -14.05269 -13.74428 -13.26448 -13.12871 -12.99773 -12.98623 -12.75820 -12.70767 -12.60149 -12.47778 -12.36766 -11.96830 -11.82825 -11.61951 -11.29389 -10.86277 -10.74344 -10.34310 -9.99639 -9.93727 -8.96832 -7.88205 -5.25327 -0.40767 -0.16759 1.17756 1.45484 1.48831 1.55013 1.84593 2.15783 2.46671 2.58368 3.17483 3.18030 3.28609 3.34287 3.49948 3.57278 3.67301 3.69847 3.83302 4.02293 4.07985 4.34019 4.38608 4.47686 4.53509 4.53954 4.58871 4.63762 4.70461 4.79825 4.88008 4.91418 4.91519 5.10334 5.25591 5.27083 5.29647 5.38885 5.45452 5.62572 5.68065 6.13783 6.20174 6.85035 6.86298 7.04616 7.70961 8.34551 9.21832 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.002767 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.540906 B =10116.866517 C =11279.824778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.001 3.999 3 C -0.155 4.155 4 C 0.151 3.849 5 F -0.134 7.134 6 C -0.230 4.230 7 C 0.564 3.436 8 O -0.567 6.567 9 N -0.702 5.702 10 C 0.145 3.855 11 C -0.090 4.090 12 H 0.087 0.913 13 C 0.140 3.860 14 N -0.624 5.624 15 C -0.246 4.246 16 H 0.087 0.913 17 C -0.066 4.066 18 N -0.952 5.952 19 Si 0.981 3.019 20 H -0.276 1.276 21 H -0.295 1.295 22 H -0.275 1.275 23 C 0.161 3.839 24 C 0.098 3.902 25 H 0.076 0.924 26 O -0.569 6.569 27 C 0.150 3.850 28 F -0.135 7.135 29 C -0.157 4.157 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.178 0.822 34 H 0.413 0.587 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.029 0.971 39 H 0.248 0.752 40 H 0.021 0.979 41 H 0.015 0.985 42 H 0.394 0.606 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.897 4.929 -13.474 27.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.001 3.999 3 C -0.174 4.174 4 C 0.131 3.869 5 F -0.113 7.113 6 C -0.234 4.234 7 C 0.350 3.650 8 O -0.446 6.446 9 N -0.352 5.352 10 C 0.021 3.979 11 C -0.110 4.110 12 H 0.106 0.894 13 C 0.015 3.985 14 N -0.351 5.351 15 C -0.375 4.375 16 H 0.105 0.895 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.809 3.191 20 H -0.202 1.202 21 H -0.221 1.221 22 H -0.201 1.201 23 C 0.036 3.964 24 C 0.037 3.963 25 H 0.094 0.906 26 O -0.376 6.376 27 C 0.130 3.870 28 F -0.114 7.114 29 C -0.175 4.175 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.195 0.805 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.033 0.967 42 H 0.244 0.756 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -22.885 5.040 -14.050 27.323 hybrid contribution 1.670 -0.696 1.414 2.297 sum -21.215 4.345 -12.635 25.072 Atomic orbital electron populations 1.21047 0.86204 1.05414 1.04778 1.20145 0.98805 0.89962 0.90982 1.21398 0.89945 1.01861 1.04186 1.17520 0.90824 0.78808 0.99784 1.91551 1.81172 1.45137 1.93414 1.19817 0.93302 0.94217 1.16109 1.18180 0.87176 0.75808 0.83873 1.90788 1.70315 1.50959 1.32527 1.45955 1.07739 1.73018 1.08537 1.21223 0.78653 1.02456 0.95578 1.22406 0.94596 0.99168 0.94781 0.89449 1.21749 0.93213 0.93832 0.89700 1.44598 1.13558 1.57685 1.19302 1.19457 1.00287 1.22852 0.94865 0.89546 1.25694 0.96080 1.01871 1.02253 1.70153 1.05745 1.47429 1.36721 0.85113 0.76616 0.78483 0.78886 1.20205 1.22136 1.20088 1.21599 0.89087 0.93422 0.92316 1.22877 0.93090 0.83699 0.96620 0.90613 1.86391 1.27435 1.26747 1.97039 1.17553 0.90861 0.78865 0.99752 1.91557 1.81184 1.45215 1.93398 1.21401 0.89969 1.01905 1.04228 0.88404 0.89112 0.88998 0.80454 0.75011 0.91251 0.90881 0.92673 0.95330 0.94312 0.96102 0.96695 0.75649 0.80621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.21 10.00 71.24 0.71 0.50 16 2 C 0.00 0.01 5.88 -19.83 -0.12 -0.10 16 3 C -0.16 -1.91 9.65 22.28 0.22 -1.69 16 4 C 0.15 3.13 7.29 22.67 0.17 3.30 16 5 F -0.13 -3.28 16.83 44.97 0.76 -2.52 16 6 C -0.23 -5.72 5.64 -20.02 -0.11 -5.84 16 7 C 0.56 17.81 6.54 86.70 0.57 18.38 16 8 O -0.57 -22.12 17.11 -4.00 -0.07 -22.19 16 9 N -0.70 -20.27 5.40 -466.28 -2.52 -22.79 16 10 C 0.14 4.50 5.12 86.38 0.44 4.94 16 11 C -0.09 -3.13 2.83 -9.40 -0.03 -3.16 16 12 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 13 C 0.14 5.59 6.41 86.86 0.56 6.14 16 14 N -0.62 -31.92 3.39 -691.97 -2.35 -34.27 16 15 C -0.25 -13.69 10.28 84.03 0.86 -12.82 16 16 H 0.09 4.54 7.83 -2.91 -0.02 4.51 16 17 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 18 N -0.95 -57.06 10.31 21.65 0.22 -56.83 16 19 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.16 7.96 5.15 86.73 0.45 8.40 16 24 C 0.10 3.67 3.80 31.78 0.12 3.79 16 25 H 0.08 2.61 8.04 -2.39 -0.02 2.59 16 26 O -0.57 -19.68 13.39 -148.98 -1.99 -21.67 16 27 C 0.15 3.21 7.29 22.67 0.17 3.37 16 28 F -0.14 -3.47 16.83 44.97 0.76 -2.71 16 29 C -0.16 -2.01 9.65 22.28 0.22 -1.79 16 30 H 0.10 0.02 8.14 -2.39 -0.02 0.00 16 31 H 0.09 -0.01 8.08 -2.39 -0.02 -0.03 16 32 H 0.09 -0.03 8.08 -2.38 -0.02 -0.05 16 33 H 0.18 1.12 8.06 -2.91 -0.02 1.09 16 34 H 0.41 10.36 8.32 -92.71 -0.77 9.58 16 35 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 36 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.03 1.14 8.00 -2.39 -0.02 1.12 16 39 H 0.25 14.48 8.31 -92.72 -0.77 13.71 16 40 H 0.02 1.17 7.30 -2.39 -0.02 1.15 16 41 H 0.01 0.81 7.50 -2.38 -0.02 0.80 16 42 H 0.39 10.52 9.12 -74.06 -0.68 9.85 16 43 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 Total: -1.00 -77.49 372.52 1.14 -76.36 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -0.38 Total: 19.05 kcal Atomic # 6 Polarization: 15.47 SS G_CDS: 4.68 Total: 20.15 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -4.65 Total: -113.90 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -2.06 Total: -43.86 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 1.51 Total: -5.24 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -77.49 1.14 -76.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243515.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.443 kcal (2) G-P(sol) polarization free energy of solvation -77.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds