Wall clock time and date at job start Sat Apr 11 2020 05:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38309 * 119.80461 * 2 1 4 4 C 1.38221 * 120.18892 * 180.02562 * 3 2 1 5 5 F 1.35093 * 120.09894 * 180.27581 * 4 3 2 6 6 C 1.39911 * 119.80565 * 0.02562 * 4 3 2 7 7 C 1.47535 * 120.18796 * 179.97438 * 6 4 3 8 8 O 1.21594 * 120.00096 * 89.99682 * 7 6 4 9 9 N 1.34777 * 120.00055 * 270.00149 * 7 6 4 10 10 C 1.46502 * 120.00217 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47246 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.63889 * 308.13678 * 11 10 9 13 13 C 1.54322 * 110.72307 * 71.47536 * 11 10 9 14 14 N 1.47019 * 107.26953 * 140.55433 * 13 11 10 15 15 C 1.36943 * 125.64453 * 181.01561 * 14 13 11 16 16 H 1.07993 * 119.99838 * 162.10664 * 15 14 13 17 17 C 1.38811 * 119.99952 * 342.09902 * 15 14 13 18 18 N 1.31624 * 119.99746 * 156.31081 * 17 15 14 19 19 Si 1.86803 * 120.00177 * 336.31039 * 17 15 14 20 20 H 1.48494 * 109.46971 * 84.67325 * 19 17 15 21 21 H 1.48502 * 109.46904 * 204.66907 * 19 17 15 22 22 H 1.48499 * 109.46955 * 324.67200 * 19 17 15 23 23 C 1.47421 * 108.70546 * 1.06093 * 14 13 11 24 24 C 1.54904 * 104.83181 * 335.87234 * 23 14 13 25 25 H 1.08998 * 111.03830 * 155.10203 * 24 23 14 26 26 O 1.42905 * 111.00087 * 278.93003 * 24 23 14 27 27 C 1.39899 * 119.62046 * 359.97438 * 6 4 3 28 28 F 1.35109 * 120.09305 * 179.97438 * 27 6 4 29 29 C 1.38216 * 119.80986 * 359.97438 * 27 6 4 30 30 H 1.09002 * 109.47699 * 269.97753 * 1 2 3 31 31 H 1.08993 * 109.47595 * 29.98452 * 1 2 3 32 32 H 1.09004 * 109.47168 * 149.98352 * 1 2 3 33 33 H 1.07990 * 119.90585 * 0.04183 * 3 2 1 34 34 H 0.96996 * 120.00041 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46850 * 299.99813 * 10 9 7 36 36 H 1.09006 * 109.47308 * 59.99315 * 10 9 7 37 37 H 1.08999 * 109.88182 * 259.97444 * 13 11 10 38 38 H 1.09003 * 109.87992 * 21.14006 * 13 11 10 39 39 H 0.97001 * 119.99629 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.36630 * 217.02628 * 23 14 13 41 41 H 1.09002 * 110.45980 * 94.75661 * 23 14 13 42 42 H 0.96691 * 114.00419 * 292.19996 * 26 24 23 43 43 H 1.08001 * 119.90659 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2001 0.0000 4 6 3.5766 1.2094 -0.0005 5 9 4.2462 2.3827 0.0051 6 6 4.2802 0.0001 -0.0016 7 6 5.7555 0.0001 -0.0028 8 8 6.3643 -0.0003 1.0498 9 7 6.4285 0.0007 -1.1705 10 6 7.8935 0.0002 -1.1717 11 6 8.4024 0.0004 -2.6145 12 1 7.9358 -0.8016 -3.1866 13 6 8.1520 1.3692 -3.2817 14 7 9.3310 1.6757 -4.1048 15 6 9.5129 2.8125 -4.8463 16 1 10.5025 3.0865 -5.1807 17 6 8.4252 3.6127 -5.1683 18 7 8.6052 4.8859 -5.4493 19 14 6.7062 2.8824 -5.2027 20 1 6.1362 2.8934 -3.8316 21 1 5.8439 3.6887 -6.1037 22 1 6.7720 1.4848 -5.7003 23 6 10.2843 0.5561 -4.0007 24 6 9.9483 -0.1267 -2.6514 25 1 10.2544 -1.1727 -2.6553 26 8 10.5461 0.5750 -1.5595 27 6 3.5767 -1.2092 -0.0016 28 9 4.2464 -2.3826 -0.0032 29 6 2.1945 -1.2000 0.0000 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8900 -0.5135 32 1 -0.3634 -0.8899 -0.5141 33 1 1.6497 2.1326 0.0007 34 1 5.9429 0.0007 -2.0101 35 1 8.2575 0.8897 -0.6575 36 1 8.2570 -0.8903 -0.6586 37 1 7.2636 1.3179 -3.9111 38 1 8.0238 2.1360 -2.5177 39 1 7.8450 5.4451 -5.6739 40 1 11.3083 0.9294 -3.9924 41 1 10.1428 -0.1428 -4.8251 42 1 11.5115 0.5242 -1.5406 43 1 1.6499 -2.1326 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958243516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:58 Heat of formation + Delta-G solvation = -114.300079 kcal Electronic energy + Delta-G solvation = -30007.861753 eV Core-core repulsion = 25497.189366 eV Total energy + Delta-G solvation = -4510.672387 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.38847 -49.27914 -40.13018 -39.09282 -38.42430 -35.16853 -34.70946 -33.27630 -32.15734 -30.83320 -30.44513 -28.46644 -27.94166 -25.66346 -23.79975 -23.34857 -22.71010 -21.02700 -20.43761 -20.17239 -18.28166 -17.81219 -17.72185 -17.22480 -16.95310 -16.54784 -16.10158 -15.79877 -15.62466 -15.59996 -15.34912 -14.76961 -14.50212 -14.21740 -14.03091 -13.90051 -13.75618 -13.58460 -13.44750 -13.30173 -12.77490 -12.43434 -12.29990 -12.24840 -12.01783 -11.92573 -11.62845 -11.56447 -11.23318 -10.93905 -10.79304 -10.43636 -10.10133 -9.98111 -9.62537 -9.36247 -9.27419 -9.20043 -9.04041 -8.61738 -7.07250 -5.96330 -3.24599 0.34666 0.54803 2.37457 2.76735 3.05926 3.32235 3.37723 3.41306 3.46803 3.89350 4.08480 4.35610 4.40381 4.45840 4.53417 4.61126 4.78182 4.89894 5.01087 5.07247 5.09378 5.10592 5.12954 5.32010 5.36780 5.41920 5.52492 5.56183 5.58547 5.68255 5.78513 5.81451 6.09526 6.12204 6.26579 6.32183 6.35298 6.43649 6.57617 6.74822 7.37001 7.66743 7.97211 8.05377 8.29364 8.81074 9.67352 10.14859 11.20234 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003755 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.084107 B = 7455.001355 C = 8848.750195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 C -0.168 4.168 4 C 0.172 3.828 5 F -0.116 7.116 6 C -0.206 4.206 7 C 0.566 3.434 8 O -0.520 6.520 9 N -0.714 5.714 10 C 0.139 3.861 11 C -0.109 4.109 12 H 0.091 0.909 13 C 0.129 3.871 14 N -0.602 5.602 15 C -0.242 4.242 16 H 0.092 0.908 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.303 1.303 22 H -0.280 1.280 23 C 0.105 3.895 24 C 0.099 3.901 25 H 0.066 0.934 26 O -0.550 6.550 27 C 0.168 3.832 28 F -0.121 7.121 29 C -0.169 4.169 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.402 0.598 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.023 0.977 38 H 0.047 0.953 39 H 0.263 0.737 40 H 0.054 0.946 41 H 0.032 0.968 42 H 0.376 0.624 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.553 -14.781 10.463 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.014 4.014 3 C -0.187 4.187 4 C 0.151 3.849 5 F -0.094 7.094 6 C -0.211 4.211 7 C 0.349 3.651 8 O -0.396 6.396 9 N -0.364 5.364 10 C 0.016 3.984 11 C -0.128 4.128 12 H 0.109 0.891 13 C 0.004 3.996 14 N -0.329 5.329 15 C -0.369 4.369 16 H 0.110 0.890 17 C -0.176 4.176 18 N -0.548 5.548 19 Si 0.716 3.284 20 H -0.212 1.212 21 H -0.231 1.231 22 H -0.207 1.207 23 C -0.021 4.021 24 C 0.039 3.961 25 H 0.083 0.917 26 O -0.356 6.356 27 C 0.148 3.852 28 F -0.099 7.099 29 C -0.188 4.188 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.168 0.832 34 H 0.236 0.764 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.050 0.950 42 H 0.223 0.777 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.686 -14.388 11.241 23.432 hybrid contribution -0.400 -0.395 -0.802 0.980 sum -15.086 -14.783 10.439 23.560 Atomic orbital electron populations 1.20904 0.89178 1.03987 1.03431 1.19690 0.96988 0.91058 0.93643 1.21066 0.91483 1.00136 1.05973 1.17314 0.89734 0.80040 0.97777 1.91628 1.80525 1.44327 1.92881 1.19966 0.95264 0.92719 1.13124 1.17668 0.85716 0.77148 0.84534 1.90831 1.68938 1.48742 1.31075 1.46088 1.08475 1.73797 1.08058 1.21305 0.77124 1.03499 0.96436 1.22553 0.95081 0.99782 0.95412 0.89060 1.21697 0.91115 0.93231 0.93544 1.44609 1.17162 1.18257 1.52881 1.18633 0.94984 0.96007 1.27290 0.89007 1.24935 0.97450 0.95413 0.99810 1.69862 1.30982 1.03768 1.50229 0.86919 0.86234 0.78251 0.76990 1.21207 1.23145 1.20728 1.22302 0.95221 0.90528 0.94044 1.22866 0.91903 0.93892 0.87465 0.91658 1.86509 1.24395 1.76720 1.47927 1.17220 0.89632 0.79752 0.98605 1.91578 1.80639 1.44534 1.93163 1.20998 0.91409 0.99984 1.06427 0.89907 0.90414 0.90488 0.83201 0.76380 0.89606 0.91033 0.95979 0.93550 0.92697 0.92792 0.95031 0.77725 0.83332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 10.00 36.00 0.36 -0.13 16 2 C -0.01 -0.10 5.88 -104.57 -0.62 -0.71 16 3 C -0.17 -1.55 9.65 -39.56 -0.38 -1.94 16 4 C 0.17 2.22 7.29 -38.96 -0.28 1.94 16 5 F -0.12 -1.79 16.83 2.25 0.04 -1.75 16 6 C -0.21 -2.85 5.64 -104.86 -0.59 -3.44 16 7 C 0.57 9.50 6.54 -12.47 -0.08 9.42 16 8 O -0.52 -10.41 17.11 5.28 0.09 -10.32 16 9 N -0.71 -11.27 5.47 -61.35 -0.34 -11.61 16 10 C 0.14 2.29 4.50 -4.04 -0.02 2.27 16 11 C -0.11 -1.82 2.89 -88.79 -0.26 -2.08 16 12 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 13 C 0.13 2.84 4.66 -3.07 -0.01 2.83 16 14 N -0.60 -14.64 3.21 -170.08 -0.55 -15.18 16 15 C -0.24 -6.96 10.56 -15.06 -0.16 -7.12 16 16 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 17 C 0.02 0.67 5.43 -17.43 -0.09 0.58 16 18 N -0.90 -28.30 13.97 55.49 0.78 -27.53 16 19 Si 0.88 22.83 24.39 -169.99 -4.15 18.68 16 20 H -0.28 -7.15 6.84 56.52 0.39 -6.76 16 21 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 22 H -0.28 -7.01 6.87 56.52 0.39 -6.62 16 23 C 0.11 1.98 6.97 -2.53 -0.02 1.96 16 24 C 0.10 1.54 4.17 -24.59 -0.10 1.44 16 25 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 26 O -0.55 -8.76 12.33 -35.23 -0.43 -9.19 16 27 C 0.17 1.94 7.29 -38.97 -0.28 1.65 16 28 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16 29 C -0.17 -1.40 9.65 -39.57 -0.38 -1.78 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.08 0.27 8.08 -51.93 -0.42 -0.15 16 32 H 0.08 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.40 5.72 8.45 -40.82 -0.35 5.38 16 35 H 0.09 1.64 7.52 -51.93 -0.39 1.25 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.52 3.52 -51.93 -0.18 0.34 16 38 H 0.05 1.14 7.68 -51.93 -0.40 0.74 16 39 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.38 4.28 9.12 45.56 0.42 4.69 16 43 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -36.74 365.89 -6.64 -43.38 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.71 Total: 4.57 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.92 Total: 4.90 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.11 Total: -54.32 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.34 Total: -19.51 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.08 Total: -3.21 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.15 Total: 18.68 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.74 -6.64 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.922 kcal (2) G-P(sol) polarization free energy of solvation -36.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds