Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38309 * 119.80461 * 2 1 4 4 C 1.38221 * 120.18892 * 180.02562 * 3 2 1 5 5 F 1.35093 * 120.09894 * 180.27581 * 4 3 2 6 6 C 1.39911 * 119.80565 * 0.02562 * 4 3 2 7 7 C 1.47535 * 120.18796 * 179.97438 * 6 4 3 8 8 O 1.21594 * 120.00096 * 89.99682 * 7 6 4 9 9 N 1.34777 * 120.00055 * 270.00149 * 7 6 4 10 10 C 1.46502 * 120.00217 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47246 * 179.97438 * 10 9 7 12 12 H 1.09002 * 110.63889 * 308.13678 * 11 10 9 13 13 C 1.54322 * 110.72307 * 71.47536 * 11 10 9 14 14 N 1.47019 * 107.26953 * 140.55433 * 13 11 10 15 15 C 1.36943 * 125.64453 * 181.01561 * 14 13 11 16 16 H 1.07993 * 119.99838 * 162.10664 * 15 14 13 17 17 C 1.38811 * 119.99952 * 342.09902 * 15 14 13 18 18 N 1.31624 * 119.99746 * 156.31081 * 17 15 14 19 19 Si 1.86803 * 120.00177 * 336.31039 * 17 15 14 20 20 H 1.48494 * 109.46971 * 84.67325 * 19 17 15 21 21 H 1.48502 * 109.46904 * 204.66907 * 19 17 15 22 22 H 1.48499 * 109.46955 * 324.67200 * 19 17 15 23 23 C 1.47421 * 108.70546 * 1.06093 * 14 13 11 24 24 C 1.54904 * 104.83181 * 335.87234 * 23 14 13 25 25 H 1.08998 * 111.03830 * 155.10203 * 24 23 14 26 26 O 1.42905 * 111.00087 * 278.93003 * 24 23 14 27 27 C 1.39899 * 119.62046 * 359.97438 * 6 4 3 28 28 F 1.35109 * 120.09305 * 179.97438 * 27 6 4 29 29 C 1.38216 * 119.80986 * 359.97438 * 27 6 4 30 30 H 1.09002 * 109.47699 * 269.97753 * 1 2 3 31 31 H 1.08993 * 109.47595 * 29.98452 * 1 2 3 32 32 H 1.09004 * 109.47168 * 149.98352 * 1 2 3 33 33 H 1.07990 * 119.90585 * 0.04183 * 3 2 1 34 34 H 0.96996 * 120.00041 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46850 * 299.99813 * 10 9 7 36 36 H 1.09006 * 109.47308 * 59.99315 * 10 9 7 37 37 H 1.08999 * 109.88182 * 259.97444 * 13 11 10 38 38 H 1.09003 * 109.87992 * 21.14006 * 13 11 10 39 39 H 0.97001 * 119.99629 * 180.02562 * 18 17 15 40 40 H 1.08994 * 110.36630 * 217.02628 * 23 14 13 41 41 H 1.09002 * 110.45980 * 94.75661 * 23 14 13 42 42 H 0.96691 * 114.00419 * 292.19996 * 26 24 23 43 43 H 1.08001 * 119.90659 * 180.02562 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2001 0.0000 4 6 3.5766 1.2094 -0.0005 5 9 4.2462 2.3827 0.0051 6 6 4.2802 0.0001 -0.0016 7 6 5.7555 0.0001 -0.0028 8 8 6.3643 -0.0003 1.0498 9 7 6.4285 0.0007 -1.1705 10 6 7.8935 0.0002 -1.1717 11 6 8.4024 0.0004 -2.6145 12 1 7.9358 -0.8016 -3.1866 13 6 8.1520 1.3692 -3.2817 14 7 9.3310 1.6757 -4.1048 15 6 9.5129 2.8125 -4.8463 16 1 10.5025 3.0865 -5.1807 17 6 8.4252 3.6127 -5.1683 18 7 8.6052 4.8859 -5.4493 19 14 6.7062 2.8824 -5.2027 20 1 6.1362 2.8934 -3.8316 21 1 5.8439 3.6887 -6.1037 22 1 6.7720 1.4848 -5.7003 23 6 10.2843 0.5561 -4.0007 24 6 9.9483 -0.1267 -2.6514 25 1 10.2544 -1.1727 -2.6553 26 8 10.5461 0.5750 -1.5595 27 6 3.5767 -1.2092 -0.0016 28 9 4.2464 -2.3826 -0.0032 29 6 2.1945 -1.2000 0.0000 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8900 -0.5135 32 1 -0.3634 -0.8899 -0.5141 33 1 1.6497 2.1326 0.0007 34 1 5.9429 0.0007 -2.0101 35 1 8.2575 0.8897 -0.6575 36 1 8.2570 -0.8903 -0.6586 37 1 7.2636 1.3179 -3.9111 38 1 8.0238 2.1360 -2.5177 39 1 7.8450 5.4451 -5.6739 40 1 11.3083 0.9294 -3.9924 41 1 10.1428 -0.1428 -4.8251 42 1 11.5115 0.5242 -1.5406 43 1 1.6499 -2.1326 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958243516.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -143.671151 kcal Electronic energy + Delta-G solvation = -30009.135378 eV Core-core repulsion = 25497.189366 eV Total energy + Delta-G solvation = -4511.946012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.32000 -50.25846 -41.31167 -40.25241 -39.60763 -36.56617 -36.25587 -34.28582 -33.91045 -32.03065 -31.59685 -29.86553 -28.90370 -27.27281 -25.38121 -24.15349 -23.69793 -22.44012 -21.94216 -21.46037 -19.39774 -19.02180 -18.71635 -18.62765 -18.54089 -17.66479 -17.29165 -16.98760 -16.94071 -16.57931 -16.32858 -16.16015 -15.79130 -15.57315 -15.42072 -15.35162 -14.91105 -14.65466 -14.42371 -14.40363 -14.24129 -13.79807 -13.49247 -13.08897 -13.04763 -13.03528 -12.96995 -12.79568 -12.74862 -12.63039 -12.35837 -12.01015 -11.88559 -11.48706 -11.31074 -10.92971 -10.72862 -10.38131 -10.05175 -9.99608 -9.09595 -8.23650 -5.47571 -0.46504 -0.22611 1.12072 1.23538 1.29423 1.40953 1.81659 2.10835 2.36621 2.52730 2.93328 3.12501 3.13660 3.25316 3.30779 3.53595 3.61321 3.64521 3.72891 3.80653 3.96897 4.23694 4.33266 4.42799 4.47021 4.49180 4.49422 4.53605 4.62897 4.75384 4.78728 4.86051 4.87893 4.91194 5.02415 5.14141 5.16720 5.23107 5.25098 5.57791 5.62406 6.04806 6.12684 6.69745 6.79375 6.98311 7.49214 8.05015 8.96707 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012197 B = 0.003755 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.084107 B = 7455.001355 C = 8848.750195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 C -0.159 4.159 4 C 0.140 3.860 5 F -0.142 7.142 6 C -0.232 4.232 7 C 0.563 3.437 8 O -0.564 6.564 9 N -0.710 5.710 10 C 0.148 3.852 11 C -0.098 4.098 12 H 0.127 0.873 13 C 0.127 3.873 14 N -0.623 5.623 15 C -0.235 4.235 16 H 0.061 0.939 17 C -0.041 4.041 18 N -0.954 5.954 19 Si 0.949 3.051 20 H -0.282 1.282 21 H -0.307 1.307 22 H -0.261 1.261 23 C 0.096 3.904 24 C 0.112 3.888 25 H 0.120 0.880 26 O -0.573 6.573 27 C 0.156 3.844 28 F -0.129 7.129 29 C -0.152 4.152 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.173 0.827 34 H 0.410 0.590 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.018 0.982 38 H 0.009 0.991 39 H 0.262 0.738 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.395 0.605 43 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.485 -18.276 10.730 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.002 3.998 3 C -0.178 4.178 4 C 0.120 3.880 5 F -0.120 7.120 6 C -0.237 4.237 7 C 0.348 3.652 8 O -0.443 6.443 9 N -0.360 5.360 10 C 0.025 3.975 11 C -0.117 4.117 12 H 0.145 0.855 13 C 0.002 3.998 14 N -0.350 5.350 15 C -0.364 4.364 16 H 0.079 0.921 17 C -0.235 4.235 18 N -0.601 5.601 19 Si 0.779 3.221 20 H -0.209 1.209 21 H -0.235 1.235 22 H -0.186 1.186 23 C -0.029 4.029 24 C 0.052 3.948 25 H 0.137 0.863 26 O -0.381 6.381 27 C 0.136 3.864 28 F -0.108 7.108 29 C -0.170 4.170 30 H 0.117 0.883 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.190 0.810 34 H 0.246 0.754 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.035 0.965 38 H 0.027 0.973 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.245 0.755 43 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.600 -17.942 11.497 27.638 hybrid contribution 0.561 0.702 -0.843 1.232 sum -17.039 -17.240 10.655 26.477 Atomic orbital electron populations 1.21050 0.85999 1.05507 1.04831 1.20168 0.98912 0.89860 0.90874 1.21409 0.89838 1.02113 1.04409 1.17709 0.91129 0.78967 1.00168 1.91556 1.81321 1.45665 1.93462 1.19862 0.93420 0.94277 1.16170 1.18190 0.87195 0.75835 0.83953 1.90786 1.70298 1.50786 1.32443 1.46102 1.08333 1.73190 1.08391 1.21121 0.77598 1.02566 0.96179 1.22580 0.96696 0.97349 0.95066 0.85522 1.21695 0.90201 0.95467 0.92423 1.44744 1.19093 1.18683 1.52439 1.18623 0.93746 0.97496 1.26517 0.92090 1.25625 1.01545 0.95625 1.00725 1.69995 1.32033 1.05191 1.52905 0.85883 0.81184 0.78137 0.76921 1.20863 1.23514 1.18609 1.22646 0.93961 0.89375 0.96915 1.22933 0.90731 0.95980 0.85172 0.86277 1.86488 1.26376 1.77285 1.47937 1.17437 0.90747 0.78641 0.99551 1.91551 1.81106 1.44748 1.93371 1.21425 0.89872 1.01831 1.03884 0.88288 0.89370 0.88606 0.80991 0.75430 0.93069 0.89397 0.96520 0.97277 0.92922 0.92813 0.92907 0.75485 0.79858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.38 10.00 71.23 0.71 0.34 16 2 C 0.00 0.03 5.88 -19.83 -0.12 -0.09 16 3 C -0.16 -2.60 9.65 22.28 0.22 -2.39 16 4 C 0.14 3.63 7.29 22.67 0.17 3.80 16 5 F -0.14 -4.59 16.83 44.97 0.76 -3.83 16 6 C -0.23 -6.43 5.64 -20.02 -0.11 -6.54 16 7 C 0.56 19.35 6.54 86.70 0.57 19.92 16 8 O -0.56 -23.49 17.11 -4.01 -0.07 -23.56 16 9 N -0.71 -22.34 5.47 -466.26 -2.55 -24.89 16 10 C 0.15 4.79 4.50 86.38 0.39 5.18 16 11 C -0.10 -3.05 2.89 -9.61 -0.03 -3.08 16 12 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 13 C 0.13 5.54 4.66 86.73 0.40 5.95 16 14 N -0.62 -30.20 3.21 -692.03 -2.22 -32.42 16 15 C -0.24 -13.90 10.56 84.03 0.89 -13.01 16 16 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 17 C -0.04 -2.48 5.43 84.86 0.46 -2.02 16 18 N -0.95 -62.18 13.97 21.65 0.30 -61.88 16 19 Si 0.95 48.22 24.39 68.60 1.67 49.90 16 20 H -0.28 -13.98 6.84 99.48 0.68 -13.30 16 21 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 22 H -0.26 -12.26 6.87 99.48 0.68 -11.57 16 23 C 0.10 3.41 6.97 86.85 0.61 4.02 16 24 C 0.11 3.13 4.17 31.98 0.13 3.26 16 25 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 26 O -0.57 -17.32 12.33 -148.98 -1.84 -19.16 16 27 C 0.16 3.36 7.29 22.67 0.17 3.53 16 28 F -0.13 -3.03 16.83 44.97 0.76 -2.27 16 29 C -0.15 -1.97 9.65 22.28 0.22 -1.75 16 30 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 31 H 0.09 0.18 8.08 -2.39 -0.02 0.16 16 32 H 0.10 0.03 8.08 -2.38 -0.02 0.02 16 33 H 0.17 1.96 8.06 -2.92 -0.02 1.93 16 34 H 0.41 11.38 8.45 -92.71 -0.78 10.60 16 35 H 0.05 2.02 7.52 -2.39 -0.02 2.00 16 36 H 0.09 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.02 0.78 3.52 -2.39 -0.01 0.77 16 38 H 0.01 0.46 7.68 -2.39 -0.02 0.45 16 39 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 40 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.40 8.24 9.12 -74.06 -0.68 7.56 16 43 H 0.18 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -86.46 365.89 1.05 -85.41 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.43 Total: 15.61 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 4.66 Total: 17.11 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -4.47 Total: -119.19 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.91 Total: -42.72 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 1.51 Total: -6.11 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 1.67 Total: 49.90 kcal Total: -86.46 1.05 -85.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243516.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.262 kcal (2) G-P(sol) polarization free energy of solvation -86.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds