Wall clock time and date at job start Sat Apr 11 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38326 * 119.90344 * 2 1 4 4 C 1.38288 * 120.38305 * 180.02562 * 3 2 1 5 5 C 1.38246 * 120.19160 * 0.02562 * 4 3 2 6 6 F 1.35095 * 120.09851 * 179.97438 * 5 4 3 7 7 C 1.39884 * 119.80299 * 0.02562 * 5 4 3 8 8 C 1.47542 * 120.18567 * 180.02562 * 7 5 4 9 9 O 1.21590 * 119.99722 * 90.00044 * 8 7 5 10 10 N 1.34779 * 119.99981 * 270.00129 * 8 7 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.88678 * 302.56882 * 12 11 10 14 14 C 1.54901 * 111.00767 * 66.45349 * 12 11 10 15 15 N 1.47426 * 104.83412 * 155.08487 * 14 12 11 16 16 C 1.36938 * 125.64854 * 155.83714 * 15 14 12 17 17 H 1.07997 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99703 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46896 * 60.00051 * 20 18 16 22 22 H 1.48501 * 109.47237 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47212 * 300.00303 * 20 18 16 24 24 C 1.47022 * 108.69915 * 335.86546 * 15 14 12 25 25 C 1.54319 * 107.27361 * 1.06369 * 24 15 14 26 26 H 1.09006 * 110.72091 * 140.55024 * 25 24 15 27 27 O 1.42892 * 110.71823 * 263.82592 * 25 24 15 28 28 C 1.38203 * 119.90788 * 180.32286 * 2 1 3 29 29 F 1.35100 * 120.09505 * 359.97423 * 28 2 1 30 30 H 1.08996 * 109.47362 * 90.00116 * 1 2 3 31 31 H 1.09003 * 109.47081 * 209.99869 * 1 2 3 32 32 H 1.08996 * 109.47392 * 329.99701 * 1 2 3 33 33 H 1.08003 * 119.80923 * 0.02562 * 3 2 1 34 34 H 1.08003 * 119.90081 * 180.02562 * 4 3 2 35 35 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 37 37 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 38 38 H 1.09006 * 110.36525 * 273.92255 * 14 12 11 39 39 H 1.09000 * 110.36978 * 36.13049 * 14 12 11 40 40 H 0.97006 * 119.99855 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.87876 * 120.48289 * 24 15 14 42 42 H 1.08999 * 109.88333 * 241.48544 * 24 15 14 43 43 H 0.96699 * 114.00558 * 293.51838 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1991 0.0000 4 6 3.5794 1.2107 -0.0005 5 6 4.2846 0.0216 -0.0016 6 9 5.6355 0.0351 -0.0026 7 6 3.5952 -1.1956 -0.0027 8 6 4.3394 -2.4696 -0.0033 9 8 4.6456 -2.9952 1.0495 10 7 4.6797 -3.0507 -1.1708 11 6 5.4181 -4.3160 -1.1713 12 6 5.6766 -4.7549 -2.6140 13 1 4.7406 -4.8524 -3.1642 14 6 6.6410 -3.7755 -3.3282 15 7 7.2693 -4.5754 -4.3953 16 6 7.8153 -4.0787 -5.5488 17 1 7.8070 -3.0150 -5.7356 18 6 8.3792 -4.9423 -6.4777 19 7 8.3897 -6.2385 -6.2496 20 14 9.1233 -4.2648 -8.0515 21 1 10.2268 -3.3298 -7.7147 22 1 9.6548 -5.3843 -8.8697 23 1 8.0795 -3.5418 -8.8213 24 6 7.2121 -5.9948 -4.0163 25 6 6.4877 -6.0770 -2.6562 26 1 5.8215 -6.9393 -2.6255 27 8 7.4304 -6.1262 -1.5835 28 6 2.1961 -1.1980 -0.0068 29 9 1.5206 -2.3680 -0.0128 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6519 2.1317 0.0004 34 1 4.1099 2.1514 -0.0001 35 1 4.4351 -2.6315 -2.0106 36 1 4.8323 -5.0788 -0.6584 37 1 6.3696 -4.1816 -0.6568 38 1 6.0856 -2.9411 -3.7566 39 1 7.3954 -3.4102 -2.6314 40 1 8.7841 -6.8420 -6.8986 41 1 6.6563 -6.5567 -4.7670 42 1 8.2218 -6.3954 -3.9260 43 1 7.9632 -6.9330 -1.5647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958377391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:06 Heat of formation + Delta-G solvation = -123.034796 kcal Electronic energy + Delta-G solvation = -29603.927608 eV Core-core repulsion = 25092.876455 eV Total energy + Delta-G solvation = -4511.051152 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.38903 -49.29925 -40.08318 -38.92677 -38.17217 -34.97088 -34.58798 -33.13970 -32.18098 -31.44467 -29.60663 -27.76210 -27.17335 -25.75290 -24.56158 -23.23073 -22.43235 -20.83325 -20.14881 -19.74691 -18.56489 -17.88207 -17.64539 -17.35552 -16.60179 -16.30778 -15.97779 -15.72708 -15.62694 -15.12305 -14.83920 -14.83795 -14.75908 -14.01949 -13.98279 -13.80773 -13.73243 -13.44289 -13.32048 -12.75445 -12.58177 -12.53991 -12.22205 -12.14107 -12.02157 -11.86526 -11.43291 -11.23105 -10.81464 -10.67369 -10.49053 -10.30131 -10.08168 -9.89976 -9.78098 -9.45055 -9.19342 -9.01312 -8.98544 -8.66935 -6.87944 -5.75655 -3.08759 0.36102 0.51291 2.38425 2.77713 3.06770 3.38388 3.39629 3.42684 3.43833 3.94792 4.13877 4.26142 4.41289 4.46055 4.54474 4.70834 4.94493 5.09018 5.14820 5.22551 5.30009 5.33551 5.38976 5.39979 5.49524 5.52506 5.58594 5.64738 5.72723 5.89002 6.01869 6.08072 6.25131 6.35376 6.37798 6.41612 6.57514 6.88428 7.37116 7.41912 7.46989 7.72657 8.07368 8.19525 8.23336 9.17075 9.77679 10.43353 11.36354 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.002768 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.285865 B =10112.587054 C =10847.744198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.132 4.132 3 C -0.050 4.050 4 C -0.160 4.160 5 C 0.159 3.841 6 F -0.118 7.118 7 C -0.192 4.192 8 C 0.563 3.437 9 O -0.522 6.522 10 N -0.710 5.710 11 C 0.138 3.862 12 C -0.110 4.110 13 H 0.089 0.911 14 C 0.145 3.855 15 N -0.602 5.602 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.925 5.925 20 Si 0.914 3.086 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.153 3.847 25 C 0.083 3.917 26 H 0.058 0.942 27 O -0.564 6.564 28 C 0.160 3.840 29 F -0.119 7.119 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.403 0.597 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.253 0.747 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.875 12.469 12.510 23.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.133 4.133 3 C -0.068 4.068 4 C -0.179 4.179 5 C 0.139 3.861 6 F -0.096 7.096 7 C -0.197 4.197 8 C 0.347 3.653 9 O -0.398 6.398 10 N -0.360 5.360 11 C 0.016 3.984 12 C -0.130 4.130 13 H 0.108 0.892 14 C 0.018 3.982 15 N -0.329 5.329 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.573 5.573 20 Si 0.744 3.256 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.028 3.972 25 C 0.023 3.977 26 H 0.076 0.924 27 O -0.369 6.369 28 C 0.140 3.860 29 F -0.097 7.097 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.063 0.937 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -15.752 12.494 13.187 24.044 hybrid contribution 0.785 -0.307 -1.499 1.720 sum -14.967 12.186 11.688 22.564 Atomic orbital electron populations 1.20748 0.89070 1.03835 1.03341 1.19944 0.97783 0.91243 1.04347 1.20902 0.92892 0.97601 0.95384 1.21178 0.94823 0.97279 1.04604 1.17319 0.77423 0.92319 0.99063 1.91606 1.27801 1.97167 1.93068 1.19997 0.93205 0.94739 1.11733 1.17688 0.79447 0.83526 0.84675 1.90833 1.54038 1.63802 1.31144 1.46088 1.56887 1.25136 1.07913 1.21285 0.96631 0.83381 0.97135 1.22687 0.99002 0.96891 0.94383 0.89244 1.21566 0.93081 0.92969 0.90534 1.44358 1.68565 1.01547 1.18409 1.19029 1.30700 0.92188 0.93658 0.90426 1.24793 1.01206 0.95524 0.98965 1.69920 1.50211 1.01186 1.35980 0.86169 0.79035 0.77522 0.82859 1.21140 1.21586 1.21153 1.21861 0.98769 0.86628 0.89935 1.23110 0.90262 0.95351 0.88935 0.92442 1.86402 1.54083 1.45681 1.50778 1.17100 0.87307 0.81740 0.99870 1.91560 1.79457 1.45574 1.93150 0.90274 0.90825 0.90474 0.83426 0.83205 0.76272 0.91481 0.89810 0.94617 0.95596 0.93680 0.92954 0.93142 0.77740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.82 36.00 0.35 -0.26 16 2 C -0.13 -1.04 5.88 -104.60 -0.62 -1.65 16 3 C -0.05 -0.31 9.68 -39.53 -0.38 -0.69 16 4 C -0.16 -1.23 10.01 -39.56 -0.40 -1.63 16 5 C 0.16 1.81 7.29 -38.96 -0.28 1.53 16 6 F -0.12 -1.58 16.83 2.25 0.04 -1.54 16 7 C -0.19 -2.46 5.64 -104.86 -0.59 -3.05 16 8 C 0.56 8.96 6.54 -12.47 -0.08 8.88 16 9 O -0.52 -10.18 17.11 5.29 0.09 -10.09 16 10 N -0.71 -10.50 5.40 -61.35 -0.33 -10.83 16 11 C 0.14 2.26 4.74 -4.04 -0.02 2.24 16 12 C -0.11 -1.91 3.03 -88.47 -0.27 -2.18 16 13 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 14 C 0.14 3.01 6.40 -2.53 -0.02 2.99 16 15 N -0.60 -15.30 3.39 -170.08 -0.58 -15.88 16 16 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 17 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 19 N -0.93 -26.82 10.31 55.49 0.57 -26.25 16 20 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C 0.15 3.62 5.14 -3.07 -0.02 3.60 16 25 C 0.08 1.54 4.09 -24.90 -0.10 1.44 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 27 O -0.56 -10.00 12.09 -35.23 -0.43 -10.43 16 28 C 0.16 1.77 7.23 -38.96 -0.28 1.49 16 29 F -0.12 -1.45 16.04 2.25 0.04 -1.42 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.44 7.64 -51.93 -0.40 0.05 16 32 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.15 0.41 8.06 -52.48 -0.42 -0.01 16 34 H 0.15 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.40 5.18 8.32 -40.82 -0.34 4.84 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.56 7.42 -51.93 -0.39 1.17 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.58 8.00 -51.93 -0.42 0.16 16 40 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 41 H 0.05 1.35 7.38 -51.93 -0.38 0.97 16 42 H 0.05 1.32 7.43 -51.93 -0.39 0.94 16 43 H 0.38 5.26 9.12 45.56 0.42 5.67 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -34.64 369.66 -7.82 -42.46 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.82 Total: 5.55 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -2.95 Total: 5.88 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: -0.34 Total: -52.96 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.34 Total: -20.52 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.07 Total: -2.96 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.64 -7.82 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958377391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.574 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds