Wall clock time and date at job start Sat Apr 11 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38326 * 119.90344 * 2 1 4 4 C 1.38288 * 120.38305 * 180.02562 * 3 2 1 5 5 C 1.38246 * 120.19160 * 0.02562 * 4 3 2 6 6 F 1.35095 * 120.09851 * 179.97438 * 5 4 3 7 7 C 1.39884 * 119.80299 * 0.02562 * 5 4 3 8 8 C 1.47542 * 120.18567 * 180.02562 * 7 5 4 9 9 O 1.21590 * 119.99722 * 90.00044 * 8 7 5 10 10 N 1.34779 * 119.99981 * 270.00129 * 8 7 5 11 11 C 1.46499 * 119.99872 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46840 * 180.02562 * 11 10 8 13 13 H 1.09000 * 110.88678 * 302.56882 * 12 11 10 14 14 C 1.54901 * 111.00767 * 66.45349 * 12 11 10 15 15 N 1.47426 * 104.83412 * 155.08487 * 14 12 11 16 16 C 1.36938 * 125.64854 * 155.83714 * 15 14 12 17 17 H 1.07997 * 119.99883 * 359.97438 * 16 15 14 18 18 C 1.38809 * 119.99703 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00127 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.46896 * 60.00051 * 20 18 16 22 22 H 1.48501 * 109.47237 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47212 * 300.00303 * 20 18 16 24 24 C 1.47022 * 108.69915 * 335.86546 * 15 14 12 25 25 C 1.54319 * 107.27361 * 1.06369 * 24 15 14 26 26 H 1.09006 * 110.72091 * 140.55024 * 25 24 15 27 27 O 1.42892 * 110.71823 * 263.82592 * 25 24 15 28 28 C 1.38203 * 119.90788 * 180.32286 * 2 1 3 29 29 F 1.35100 * 120.09505 * 359.97423 * 28 2 1 30 30 H 1.08996 * 109.47362 * 90.00116 * 1 2 3 31 31 H 1.09003 * 109.47081 * 209.99869 * 1 2 3 32 32 H 1.08996 * 109.47392 * 329.99701 * 1 2 3 33 33 H 1.08003 * 119.80923 * 0.02562 * 3 2 1 34 34 H 1.08003 * 119.90081 * 180.02562 * 4 3 2 35 35 H 0.97000 * 119.99708 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.47391 * 59.99686 * 11 10 8 37 37 H 1.09001 * 109.46813 * 299.99742 * 11 10 8 38 38 H 1.09006 * 110.36525 * 273.92255 * 14 12 11 39 39 H 1.09000 * 110.36978 * 36.13049 * 14 12 11 40 40 H 0.97006 * 119.99855 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.87876 * 120.48289 * 24 15 14 42 42 H 1.08999 * 109.88333 * 241.48544 * 24 15 14 43 43 H 0.96699 * 114.00558 * 293.51838 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1991 0.0000 4 6 3.5794 1.2107 -0.0005 5 6 4.2846 0.0216 -0.0016 6 9 5.6355 0.0351 -0.0026 7 6 3.5952 -1.1956 -0.0027 8 6 4.3394 -2.4696 -0.0033 9 8 4.6456 -2.9952 1.0495 10 7 4.6797 -3.0507 -1.1708 11 6 5.4181 -4.3160 -1.1713 12 6 5.6766 -4.7549 -2.6140 13 1 4.7406 -4.8524 -3.1642 14 6 6.6410 -3.7755 -3.3282 15 7 7.2693 -4.5754 -4.3953 16 6 7.8153 -4.0787 -5.5488 17 1 7.8070 -3.0150 -5.7356 18 6 8.3792 -4.9423 -6.4777 19 7 8.3897 -6.2385 -6.2496 20 14 9.1233 -4.2648 -8.0515 21 1 10.2268 -3.3298 -7.7147 22 1 9.6548 -5.3843 -8.8697 23 1 8.0795 -3.5418 -8.8213 24 6 7.2121 -5.9948 -4.0163 25 6 6.4877 -6.0770 -2.6562 26 1 5.8215 -6.9393 -2.6255 27 8 7.4304 -6.1262 -1.5835 28 6 2.1961 -1.1980 -0.0068 29 9 1.5206 -2.3680 -0.0128 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6519 2.1317 0.0004 34 1 4.1099 2.1514 -0.0001 35 1 4.4351 -2.6315 -2.0106 36 1 4.8323 -5.0788 -0.6584 37 1 6.3696 -4.1816 -0.6568 38 1 6.0856 -2.9411 -3.7566 39 1 7.3954 -3.4102 -2.6314 40 1 8.7841 -6.8420 -6.8986 41 1 6.6563 -6.5567 -4.7670 42 1 8.2218 -6.3954 -3.9260 43 1 7.9632 -6.9330 -1.5647 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958377391.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:06 Heat of formation + Delta-G solvation = -148.545581 kcal Electronic energy + Delta-G solvation = -29605.033838 eV Core-core repulsion = 25092.876455 eV Total energy + Delta-G solvation = -4512.157383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.22911 -50.19507 -41.22725 -40.06416 -39.46520 -36.46372 -36.21541 -34.12174 -33.66308 -32.34109 -31.23154 -29.48237 -27.76671 -27.38405 -25.92283 -24.53291 -23.19664 -22.31923 -21.67926 -21.17893 -19.44838 -19.16186 -18.82607 -18.56493 -18.05971 -17.49593 -16.89628 -16.82831 -16.77859 -16.52657 -16.20541 -15.83847 -15.76225 -15.58022 -15.40812 -15.07509 -14.81321 -14.41480 -14.30390 -14.26917 -14.06359 -13.62365 -13.19748 -13.16050 -13.13209 -12.91474 -12.72186 -12.66278 -12.64312 -12.41399 -12.14509 -11.96041 -11.81511 -11.71442 -11.24536 -10.82106 -10.74364 -10.31620 -10.19953 -9.69744 -8.94236 -7.87926 -5.23655 -0.37387 -0.17350 1.18064 1.44997 1.48266 1.54439 1.87074 2.18933 2.47313 2.62009 3.20975 3.23934 3.30561 3.35690 3.50106 3.61421 3.68449 3.84807 3.88681 3.94088 3.96240 4.33150 4.36829 4.52229 4.55475 4.59420 4.75485 4.76637 4.78991 4.81738 4.82551 4.92152 4.95143 5.14549 5.17637 5.21588 5.29581 5.38895 5.49251 5.63002 5.67109 6.14963 6.21293 6.85882 6.91488 7.06750 7.72790 8.37480 9.22128 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014427 B = 0.002768 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.285865 B =10112.587054 C =10847.744198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.122 4.122 3 C -0.030 4.030 4 C -0.145 4.145 5 C 0.132 3.868 6 F -0.139 7.139 7 C -0.216 4.216 8 C 0.562 3.438 9 O -0.568 6.568 10 N -0.703 5.703 11 C 0.153 3.847 12 C -0.093 4.093 13 H 0.109 0.891 14 C 0.144 3.856 15 N -0.624 5.624 16 C -0.246 4.246 17 H 0.082 0.918 18 C -0.064 4.064 19 N -0.951 5.951 20 Si 0.980 3.020 21 H -0.280 1.280 22 H -0.294 1.294 23 H -0.274 1.274 24 C 0.160 3.840 25 C 0.096 3.904 26 H 0.090 0.910 27 O -0.571 6.571 28 C 0.138 3.862 29 F -0.133 7.133 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.197 0.803 34 H 0.180 0.820 35 H 0.413 0.587 36 H 0.074 0.926 37 H 0.060 0.940 38 H 0.049 0.951 39 H 0.010 0.990 40 H 0.248 0.752 41 H 0.025 0.975 42 H 0.015 0.985 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.205 15.256 12.517 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.123 4.123 3 C -0.047 4.047 4 C -0.163 4.163 5 C 0.112 3.888 6 F -0.117 7.117 7 C -0.221 4.221 8 C 0.347 3.653 9 O -0.447 6.447 10 N -0.353 5.353 11 C 0.029 3.971 12 C -0.112 4.112 13 H 0.127 0.873 14 C 0.018 3.982 15 N -0.350 5.350 16 C -0.375 4.375 17 H 0.100 0.900 18 C -0.257 4.257 19 N -0.600 5.600 20 Si 0.808 3.192 21 H -0.206 1.206 22 H -0.220 1.220 23 H -0.199 1.199 24 C 0.035 3.965 25 C 0.036 3.964 26 H 0.107 0.893 27 O -0.379 6.379 28 C 0.118 3.882 29 F -0.112 7.112 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.214 0.786 34 H 0.197 0.803 35 H 0.249 0.751 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.028 0.972 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.034 0.966 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -18.098 15.302 13.193 27.125 hybrid contribution 1.486 -1.095 -1.466 2.358 sum -16.612 14.207 11.727 24.806 Atomic orbital electron populations 1.20868 0.87036 1.04819 1.04332 1.20359 0.99198 0.90452 1.02270 1.21477 0.92249 0.98691 0.92297 1.21585 0.95572 0.96813 1.02328 1.17703 0.76796 0.93235 1.01087 1.91550 1.29373 1.97287 1.93529 1.19854 0.93942 0.93548 1.14787 1.18221 0.78775 0.84319 0.83959 1.90790 1.55975 1.65399 1.32586 1.46016 1.56277 1.24632 1.08421 1.20996 0.95845 0.84305 0.95941 1.22575 0.98732 0.95223 0.94719 0.87295 1.21640 0.93247 0.93817 0.89449 1.44675 1.68725 1.02841 1.18749 1.19430 1.30702 0.92633 0.94685 0.90032 1.25643 1.02026 0.95898 1.02178 1.70137 1.50960 1.02186 1.36684 0.85133 0.78341 0.76742 0.78999 1.20633 1.21963 1.19931 1.21688 0.97082 0.85533 0.92191 1.22957 0.90149 0.97109 0.86172 0.89261 1.86385 1.54432 1.47165 1.49948 1.17396 0.86761 0.82513 1.01519 1.91517 1.79541 1.46618 1.93482 0.89137 0.91843 0.87551 0.78631 0.80264 0.75085 0.90795 0.92205 0.93246 0.97212 0.94301 0.95668 0.96644 0.75884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.82 9.82 71.23 0.70 -0.12 16 2 C -0.12 -1.54 5.88 -19.85 -0.12 -1.66 16 3 C -0.03 -0.23 9.68 22.30 0.22 -0.01 16 4 C -0.14 -1.75 10.01 22.28 0.22 -1.53 16 5 C 0.13 2.91 7.29 22.67 0.17 3.08 16 6 F -0.14 -3.78 16.83 44.97 0.76 -3.03 16 7 C -0.22 -5.56 5.64 -20.02 -0.11 -5.67 16 8 C 0.56 18.43 6.54 86.70 0.57 19.00 16 9 O -0.57 -23.13 17.11 -4.00 -0.07 -23.20 16 10 N -0.70 -21.01 5.40 -466.26 -2.52 -23.53 16 11 C 0.15 4.98 4.74 86.38 0.41 5.39 16 12 C -0.09 -3.18 3.03 -9.40 -0.03 -3.21 16 13 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 14 C 0.14 6.01 6.40 86.85 0.56 6.57 16 15 N -0.62 -32.27 3.39 -692.00 -2.35 -34.62 16 16 C -0.25 -13.85 10.28 84.03 0.86 -12.99 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 18 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 19 N -0.95 -56.65 10.31 21.65 0.22 -56.43 16 20 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 24 C 0.16 7.79 5.14 86.73 0.45 8.23 16 25 C 0.10 3.51 4.09 31.78 0.13 3.64 16 26 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 27 O -0.57 -20.23 12.09 -148.98 -1.80 -22.03 16 28 C 0.14 2.94 7.23 22.67 0.16 3.10 16 29 F -0.13 -3.25 16.04 44.97 0.72 -2.53 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.62 7.64 -2.39 -0.02 0.60 16 32 H 0.11 0.18 8.08 -2.39 -0.02 0.16 16 33 H 0.20 -0.29 8.06 -2.91 -0.02 -0.31 16 34 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.41 10.55 8.32 -92.71 -0.77 9.78 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.27 7.42 -2.39 -0.02 2.26 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.01 0.45 8.00 -2.39 -0.02 0.43 16 40 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 41 H 0.03 1.34 7.38 -2.38 -0.02 1.33 16 42 H 0.02 0.84 7.43 -2.39 -0.02 0.83 16 43 H 0.39 10.91 9.12 -74.06 -0.68 10.24 16 Total: -1.00 -79.67 369.66 1.26 -78.41 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -0.37 Total: 18.68 kcal Atomic # 6 Polarization: 15.97 SS G_CDS: 4.65 Total: 20.62 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -4.65 Total: -114.58 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -1.87 Total: -45.23 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 1.48 Total: -5.56 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -79.67 1.26 -78.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958377391.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.137 kcal (2) G-P(sol) polarization free energy of solvation -79.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds