Wall clock time and date at job start Sat Apr 11 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38336 * 119.90568 * 2 1 4 4 C 1.38283 * 120.38244 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.19377 * 359.97438 * 4 3 2 6 6 F 1.35102 * 120.09934 * 180.02562 * 5 4 3 7 7 C 1.39888 * 119.80431 * 0.02562 * 5 4 3 8 8 C 1.47546 * 120.18534 * 179.97438 * 7 5 4 9 9 O 1.21587 * 119.99856 * 89.99968 * 8 7 5 10 10 N 1.34774 * 119.99910 * 269.99395 * 8 7 5 11 11 C 1.46504 * 119.99981 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47036 * 180.02562 * 11 10 8 13 13 H 1.09002 * 110.78272 * 51.75735 * 12 11 10 14 14 C 1.54327 * 110.71739 * 288.52195 * 12 11 10 15 15 N 1.47014 * 107.27187 * 219.44553 * 14 12 11 16 16 C 1.36941 * 125.65028 * 178.98893 * 15 14 12 17 17 H 1.08001 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00004 * 179.97438 * 16 15 14 19 19 N 1.31624 * 120.00364 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00071 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46912 * 59.99933 * 20 18 16 22 22 H 1.48493 * 109.47199 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46777 * 300.00037 * 20 18 16 24 24 C 1.47419 * 108.70437 * 358.94082 * 15 14 12 25 25 C 1.54912 * 104.83306 * 24.12578 * 24 15 14 26 26 H 1.08995 * 111.03828 * 204.90274 * 25 24 15 27 27 O 1.42903 * 110.99758 * 81.06681 * 25 24 15 28 28 C 1.38205 * 119.90787 * 180.22912 * 2 1 3 29 29 F 1.35103 * 120.09387 * 0.02985 * 28 2 1 30 30 H 1.09002 * 109.46755 * 90.00202 * 1 2 3 31 31 H 1.09002 * 109.47099 * 209.99676 * 1 2 3 32 32 H 1.08996 * 109.47190 * 330.00118 * 1 2 3 33 33 H 1.08002 * 119.80365 * 359.95818 * 3 2 1 34 34 H 1.08005 * 119.90049 * 179.97438 * 4 3 2 35 35 H 0.97000 * 119.99775 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.46660 * 60.00162 * 11 10 8 37 37 H 1.08998 * 109.47245 * 300.00289 * 11 10 8 38 38 H 1.08999 * 109.88583 * 338.86569 * 14 12 11 39 39 H 1.09001 * 109.88372 * 100.02571 * 14 12 11 40 40 H 0.96996 * 119.99935 * 179.97438 * 19 18 16 41 41 H 1.09009 * 110.36844 * 265.29198 * 24 15 14 42 42 H 1.09002 * 110.37005 * 142.96697 * 24 15 14 43 43 H 0.96700 * 114.00311 * 67.80834 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1992 0.0000 4 6 3.5795 1.2107 0.0005 5 6 4.2846 0.0217 0.0016 6 9 5.6355 0.0352 0.0026 7 6 3.5952 -1.1955 0.0016 8 6 4.3394 -2.4696 0.0022 9 8 4.6456 -2.9943 1.0554 10 7 4.6796 -3.0518 -1.1647 11 6 5.4180 -4.3171 -1.1642 12 6 5.6763 -4.7574 -2.6065 13 1 6.1333 -3.9517 -3.1810 14 6 4.3686 -5.2310 -3.2753 15 7 4.6988 -6.4043 -4.0974 16 6 3.8095 -7.1344 -4.8398 17 1 2.7645 -6.8618 -4.8523 18 6 4.2510 -8.2250 -5.5763 19 7 5.5246 -8.5571 -5.5616 20 14 3.0378 -9.2215 -6.5885 21 1 2.3964 -8.3422 -7.5989 22 1 3.7554 -10.3249 -7.2760 23 1 1.9969 -9.7899 -5.6948 24 6 6.1460 -6.6638 -3.9911 25 6 6.5648 -6.0289 -2.6415 26 1 7.6226 -5.7664 -2.6441 27 8 6.2582 -6.8983 -1.5496 28 6 2.1961 -1.1980 -0.0048 29 9 1.5206 -2.3680 -0.0101 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6519 2.1317 -0.0007 34 1 4.1100 2.1514 0.0001 35 1 4.4355 -2.6330 -2.0050 36 1 4.8322 -5.0793 -0.6506 37 1 6.3695 -4.1823 -0.6499 38 1 3.6405 -5.5061 -2.5122 39 1 3.9663 -4.4380 -3.9056 40 1 5.8330 -9.3194 -6.0759 41 1 6.6783 -6.1886 -4.8152 42 1 6.3395 -7.7365 -3.9819 43 1 6.7885 -7.7067 -1.5296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958377393.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:12 Heat of formation + Delta-G solvation = -120.835521 kcal Electronic energy + Delta-G solvation = -29638.299836 eV Core-core repulsion = 25127.344051 eV Total energy + Delta-G solvation = -4510.955785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.36983 -49.33216 -40.08812 -38.92434 -38.13758 -34.91798 -34.52596 -33.13928 -32.21445 -31.44969 -29.60648 -27.75266 -27.16793 -25.73873 -24.55828 -23.21642 -22.42757 -20.85279 -20.16904 -19.66255 -18.56960 -17.85694 -17.64902 -17.30589 -16.60445 -16.28038 -15.99526 -15.71620 -15.65953 -15.12040 -14.89356 -14.80570 -14.76429 -14.14332 -13.98340 -13.80315 -13.77413 -13.42391 -13.15957 -12.71698 -12.55918 -12.36299 -12.19970 -12.13111 -12.04609 -11.92395 -11.38612 -11.24350 -10.79428 -10.67796 -10.39906 -10.34017 -10.07734 -9.86287 -9.81184 -9.45502 -9.10878 -9.02176 -8.99115 -8.67559 -6.84172 -5.68605 -3.08631 0.34995 0.50479 2.38202 2.76792 3.06232 3.38898 3.39885 3.43989 3.45207 3.93908 4.13154 4.26825 4.39659 4.47182 4.54185 4.74085 4.96103 5.12674 5.18433 5.22163 5.30716 5.32318 5.38730 5.40610 5.48975 5.51117 5.61659 5.65682 5.73171 5.89964 6.04162 6.11202 6.24239 6.32936 6.39423 6.45741 6.63265 6.85530 7.28041 7.41110 7.57523 7.75366 8.07198 8.24098 8.37855 9.18961 9.80285 10.44322 11.36295 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014824 B = 0.002821 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.412797 B = 9923.772693 C =11060.643907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.130 4.130 3 C -0.050 4.050 4 C -0.161 4.161 5 C 0.156 3.844 6 F -0.121 7.121 7 C -0.191 4.191 8 C 0.563 3.437 9 O -0.521 6.521 10 N -0.711 5.711 11 C 0.139 3.861 12 C -0.106 4.106 13 H 0.087 0.913 14 C 0.144 3.856 15 N -0.597 5.597 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.926 5.926 20 Si 0.916 3.084 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.127 3.873 25 C 0.082 3.918 26 H 0.055 0.945 27 O -0.557 6.557 28 C 0.162 3.838 29 F -0.116 7.116 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.402 0.598 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.019 0.981 40 H 0.252 0.748 41 H 0.019 0.981 42 H 0.112 0.888 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.945 21.317 10.224 23.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.132 4.132 3 C -0.068 4.068 4 C -0.180 4.180 5 C 0.136 3.864 6 F -0.100 7.100 7 C -0.197 4.197 8 C 0.346 3.654 9 O -0.397 6.397 10 N -0.361 5.361 11 C 0.017 3.983 12 C -0.126 4.126 13 H 0.105 0.895 14 C 0.018 3.982 15 N -0.323 5.323 16 C -0.347 4.347 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.575 5.575 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.001 3.999 25 C 0.022 3.978 26 H 0.073 0.927 27 O -0.363 6.363 28 C 0.142 3.858 29 F -0.094 7.094 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.236 0.764 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.047 0.953 39 H 0.037 0.963 40 H 0.063 0.937 41 H 0.037 0.963 42 H 0.130 0.870 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.125 21.132 10.961 24.160 hybrid contribution -0.086 -0.903 -1.208 1.510 sum -4.211 20.229 9.753 22.849 Atomic orbital electron populations 1.20763 0.89002 1.03898 1.03440 1.19975 0.97866 0.91227 1.04089 1.20902 0.92885 0.97604 0.95422 1.21143 0.94821 0.97175 1.04838 1.17284 0.77249 0.92328 0.99556 1.91580 1.27979 1.97192 1.93216 1.20005 0.93258 0.94693 1.11698 1.17691 0.79453 0.83536 0.84698 1.90838 1.53936 1.63833 1.31087 1.46112 1.57137 1.25013 1.07868 1.21341 0.96294 0.83622 0.97053 1.22515 0.98522 0.96943 0.94591 0.89519 1.21324 0.93516 0.90140 0.93187 1.44331 1.04342 1.30042 1.53594 1.19048 0.89784 1.06526 1.19375 0.90528 1.24761 0.96406 0.98884 1.00652 1.69735 1.12772 1.29563 1.45458 0.86125 0.79851 0.79580 0.79798 1.21237 1.21573 1.21129 1.22589 0.84334 1.03004 0.89929 1.23206 0.95362 0.89673 0.89578 0.92720 1.86397 1.66415 1.35006 1.48458 1.17143 0.87358 0.81871 0.99434 1.91592 1.79390 1.45424 1.93005 0.90186 0.90714 0.90467 0.83423 0.83290 0.76376 0.89869 0.91365 0.95322 0.96334 0.93697 0.96315 0.87022 0.77783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.82 36.00 0.35 -0.33 16 2 C -0.13 -1.07 5.88 -104.60 -0.62 -1.68 16 3 C -0.05 -0.30 9.68 -39.53 -0.38 -0.69 16 4 C -0.16 -1.16 10.01 -39.57 -0.40 -1.56 16 5 C 0.16 1.68 7.29 -38.97 -0.28 1.39 16 6 F -0.12 -1.46 16.83 2.25 0.04 -1.43 16 7 C -0.19 -2.45 5.64 -104.86 -0.59 -3.04 16 8 C 0.56 9.01 6.54 -12.47 -0.08 8.93 16 9 O -0.52 -10.29 17.11 5.29 0.09 -10.20 16 10 N -0.71 -10.52 5.47 -61.35 -0.34 -10.86 16 11 C 0.14 2.32 4.50 -4.04 -0.02 2.30 16 12 C -0.11 -1.85 2.89 -88.79 -0.26 -2.11 16 13 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 14 C 0.14 3.04 6.75 -3.07 -0.02 3.02 16 15 N -0.60 -15.31 3.39 -170.07 -0.58 -15.89 16 16 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 19 N -0.93 -26.67 10.09 55.49 0.56 -26.11 16 20 Si 0.92 22.14 29.55 -169.99 -5.02 17.12 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.13 2.99 5.62 -2.53 -0.01 2.98 16 25 C 0.08 1.54 4.17 -24.59 -0.10 1.44 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 27 O -0.56 -10.50 12.33 -35.23 -0.43 -10.94 16 28 C 0.16 1.88 7.23 -38.97 -0.28 1.60 16 29 F -0.12 -1.57 16.04 2.25 0.04 -1.53 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.51 7.64 -51.93 -0.40 0.12 16 32 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 34 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.40 5.06 8.45 -40.82 -0.35 4.72 16 36 H 0.08 1.61 7.52 -51.93 -0.39 1.22 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.03 0.64 7.68 -51.93 -0.40 0.24 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.02 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 43 H 0.38 5.77 9.12 45.56 0.42 6.18 16 LS Contribution 369.39 15.07 5.57 5.57 Total: -1.00 -34.69 369.39 -7.79 -42.48 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.77 Total: 6.27 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.94 Total: 5.51 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.35 Total: -52.85 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: -0.34 Total: -21.13 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.07 Total: -2.96 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.69 -7.79 -42.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958377393.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.359 kcal (2) G-P(sol) polarization free energy of solvation -34.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds