Wall clock time and date at job start Sat Apr 11 2020 05:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38324 * 119.90131 * 2 1 4 4 C 1.38291 * 120.38310 * 180.02562 * 3 2 1 5 5 C 1.38243 * 120.18455 * 359.74016 * 4 3 2 6 6 F 1.35104 * 120.09144 * 180.27954 * 5 4 3 7 7 C 1.39880 * 119.81321 * 0.51490 * 5 4 3 8 8 C 1.47537 * 120.19330 * 179.76871 * 7 5 4 9 9 O 1.21593 * 119.99856 * 269.72253 * 8 7 5 10 10 N 1.34777 * 120.00133 * 89.44805 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27865 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 H 1.08991 * 110.64244 * 56.68439 * 12 11 10 14 14 C 1.54322 * 110.71720 * 293.54089 * 12 11 10 15 15 N 1.47021 * 107.27163 * 219.44371 * 14 12 11 16 16 C 1.36939 * 125.64557 * 178.90872 * 15 14 12 17 17 H 1.07992 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99501 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00100 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99871 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47132 * 89.99788 * 20 18 16 22 22 H 1.48498 * 109.47191 * 210.00332 * 20 18 16 23 23 H 1.48504 * 109.47199 * 329.99945 * 20 18 16 24 24 C 1.47423 * 108.70210 * 358.94521 * 15 14 12 25 25 C 1.54905 * 104.83372 * 24.12462 * 24 15 14 26 26 H 1.09008 * 111.00237 * 81.06437 * 25 24 15 27 27 O 1.42892 * 111.00722 * 204.91684 * 25 24 15 28 28 C 1.38206 * 119.90751 * 180.02562 * 2 1 3 29 29 F 1.35101 * 120.09361 * 359.97438 * 28 2 1 30 30 H 1.08997 * 109.47207 * 269.97442 * 1 2 3 31 31 H 1.08993 * 109.47608 * 29.97964 * 1 2 3 32 32 H 1.09007 * 109.47084 * 149.97746 * 1 2 3 33 33 H 1.07998 * 119.81221 * 0.04295 * 3 2 1 34 34 H 1.07995 * 119.90405 * 180.02562 * 4 3 2 35 35 H 0.97000 * 119.99736 * 0.27139 * 10 8 7 36 36 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 37 37 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 38 38 H 1.09003 * 109.88600 * 338.86768 * 14 12 11 39 39 H 1.09005 * 109.88099 * 100.02830 * 14 12 11 40 40 H 0.97003 * 119.99808 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.36567 * 142.96793 * 24 15 14 42 42 H 1.09001 * 110.36518 * 265.18031 * 24 15 14 43 43 H 0.96699 * 114.00218 * 292.19962 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1991 0.0000 4 6 3.5794 1.2107 -0.0005 5 6 4.2845 0.0216 0.0043 6 9 5.6355 0.0352 0.0095 7 6 3.5953 -1.1956 -0.0011 8 6 4.3394 -2.4696 -0.0011 9 8 4.6457 -2.9947 -1.0541 10 7 4.6845 -3.0484 1.1661 11 6 5.4287 -4.3104 1.1660 12 6 5.6917 -4.7474 2.6085 13 1 4.7558 -4.8349 3.1602 14 6 6.6498 -3.7627 3.3112 15 7 7.5632 -4.5604 4.1423 16 6 8.5810 -4.0637 4.9122 17 1 8.7661 -3.0002 4.9419 18 6 9.3755 -4.9275 5.6536 19 7 9.1502 -6.2237 5.6169 20 14 10.7643 -4.2501 6.7032 21 1 10.2540 -3.9485 8.0647 22 1 11.8524 -5.2566 6.7940 23 1 11.2907 -3.0066 6.0852 24 6 7.2025 -5.9836 4.0090 25 6 6.4802 -6.0832 2.6423 26 1 7.1983 -6.1338 1.8237 27 8 5.5927 -7.2027 2.6123 28 6 2.1961 -1.1980 -0.0005 29 9 1.5206 -2.3680 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6519 2.1317 0.0007 34 1 4.1099 2.1514 -0.0001 35 1 4.4401 -2.6295 2.0061 36 1 4.8454 -5.0761 0.6546 37 1 6.3785 -4.1720 0.6497 38 1 7.2179 -3.2037 2.5675 39 1 6.0812 -3.0765 3.9389 40 1 9.7057 -6.8273 6.1347 41 1 8.0988 -6.6038 4.0106 42 1 6.5337 -6.2826 4.8160 43 1 6.0400 -8.0599 2.6318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958377395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:14 Heat of formation + Delta-G solvation = -123.698097 kcal Electronic energy + Delta-G solvation = -29500.347922 eV Core-core repulsion = 24989.268006 eV Total energy + Delta-G solvation = -4511.079915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.40035 -49.32084 -40.12257 -38.94214 -38.12323 -35.20486 -34.68682 -33.16713 -32.29199 -31.47350 -29.65558 -27.60135 -27.18435 -25.80967 -24.57968 -23.21017 -22.44857 -20.91828 -20.21211 -19.79154 -18.58591 -17.91359 -17.69053 -17.07785 -16.74611 -16.48627 -16.00885 -15.76772 -15.64907 -15.25947 -15.12192 -14.83545 -14.77601 -14.12823 -13.98081 -13.81894 -13.68845 -13.45199 -13.03315 -12.88488 -12.55905 -12.44123 -12.23665 -12.14089 -12.03060 -11.98417 -11.56720 -11.26972 -11.00380 -10.83310 -10.65679 -10.27138 -10.08010 -9.89865 -9.69076 -9.47456 -9.18761 -9.06558 -9.02377 -8.72545 -6.93174 -5.73195 -3.15780 0.33959 0.49549 2.34070 2.75309 3.02031 3.36282 3.37509 3.41310 3.43310 3.92994 4.11800 4.23748 4.36297 4.42567 4.52505 4.70108 4.91484 5.01963 5.13849 5.20790 5.21308 5.31127 5.37544 5.42213 5.46981 5.47805 5.63362 5.64914 5.71215 5.90950 5.99973 6.02226 6.17458 6.23343 6.31071 6.40478 6.55793 6.78711 7.33702 7.36439 7.52686 7.72510 8.02347 8.14529 8.27151 9.12980 9.73728 10.36817 11.30886 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.002757 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.129486 B =10152.585919 C =11201.765595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.049 4.049 4 C -0.160 4.160 5 C 0.159 3.841 6 F -0.118 7.118 7 C -0.192 4.192 8 C 0.564 3.436 9 O -0.522 6.522 10 N -0.708 5.708 11 C 0.132 3.868 12 C -0.105 4.105 13 H 0.087 0.913 14 C 0.140 3.860 15 N -0.601 5.601 16 C -0.224 4.224 17 H 0.079 0.921 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.917 3.083 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.128 3.872 25 C 0.082 3.918 26 H 0.061 0.939 27 O -0.569 6.569 28 C 0.161 3.839 29 F -0.119 7.119 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.404 0.596 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.030 0.970 39 H 0.025 0.975 40 H 0.253 0.747 41 H 0.110 0.890 42 H 0.022 0.978 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.643 13.130 -11.110 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.133 4.133 3 C -0.067 4.067 4 C -0.179 4.179 5 C 0.139 3.861 6 F -0.097 7.097 7 C -0.197 4.197 8 C 0.348 3.652 9 O -0.398 6.398 10 N -0.359 5.359 11 C 0.009 3.991 12 C -0.124 4.124 13 H 0.105 0.895 14 C 0.014 3.986 15 N -0.328 5.328 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.206 4.206 19 N -0.572 5.572 20 Si 0.747 3.253 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.003 3.997 25 C 0.021 3.979 26 H 0.079 0.921 27 O -0.374 6.374 28 C 0.140 3.860 29 F -0.097 7.097 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.048 0.952 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.040 0.960 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -16.651 13.069 -11.743 24.206 hybrid contribution 1.195 -0.092 1.071 1.608 sum -15.456 12.977 -10.671 22.829 Atomic orbital electron populations 1.20751 0.89047 1.03859 1.03355 1.19948 0.97804 0.91230 1.04321 1.20907 0.92893 0.97610 0.95328 1.21178 0.94823 0.97277 1.04599 1.17316 0.77415 0.92308 0.99080 1.91609 1.27799 1.97170 1.93076 1.19971 0.93211 0.94654 1.11885 1.17700 0.79395 0.83532 0.84621 1.90833 1.54097 1.63783 1.31118 1.46021 1.56634 1.25189 1.08015 1.21532 0.96288 0.84013 0.97266 1.22410 1.00034 0.95844 0.94152 0.89470 1.21375 0.90918 0.93103 0.93167 1.44315 1.34288 1.01734 1.52461 1.19092 1.05075 0.92322 1.18750 0.90266 1.24807 0.99865 0.95524 1.00414 1.69761 1.41252 1.01275 1.44866 0.86034 0.81380 0.77701 0.80159 1.21555 1.21581 1.20607 1.22544 0.99403 0.87538 0.90212 1.23306 0.90195 0.84255 1.00095 0.92061 1.86368 1.36886 1.16674 1.97436 1.17107 0.87303 0.81768 0.99789 1.91566 1.79443 1.45548 1.93127 0.90262 0.90459 0.90803 0.83405 0.83185 0.76141 0.90789 0.90890 0.95223 0.95760 0.93610 0.87282 0.95953 0.77589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.83 36.00 0.35 -0.25 16 2 C -0.13 -1.03 5.88 -104.60 -0.62 -1.64 16 3 C -0.05 -0.30 9.68 -39.53 -0.38 -0.68 16 4 C -0.16 -1.21 10.01 -39.56 -0.40 -1.60 16 5 C 0.16 1.78 7.29 -38.97 -0.28 1.50 16 6 F -0.12 -1.56 16.83 2.25 0.04 -1.52 16 7 C -0.19 -2.44 5.64 -104.86 -0.59 -3.03 16 8 C 0.56 8.88 6.54 -12.47 -0.08 8.80 16 9 O -0.52 -10.06 17.11 5.28 0.09 -9.97 16 10 N -0.71 -10.37 5.40 -61.35 -0.33 -10.70 16 11 C 0.13 2.12 4.99 -4.04 -0.02 2.10 16 12 C -0.11 -1.86 2.75 -88.78 -0.24 -2.10 16 13 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.14 2.86 6.52 -3.07 -0.02 2.84 16 15 N -0.60 -15.18 3.39 -170.08 -0.58 -15.75 16 16 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 19 N -0.92 -26.45 10.09 55.49 0.56 -25.89 16 20 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C 0.13 3.07 5.62 -2.53 -0.01 3.05 16 25 C 0.08 1.57 3.88 -24.59 -0.10 1.47 16 26 H 0.06 1.15 8.05 -51.92 -0.42 0.73 16 27 O -0.57 -9.90 13.47 -35.23 -0.47 -10.37 16 28 C 0.16 1.77 7.23 -38.96 -0.28 1.48 16 29 F -0.12 -1.46 16.03 2.25 0.04 -1.42 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.07 0.44 7.63 -51.93 -0.40 0.05 16 33 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 34 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.40 5.13 8.31 -40.82 -0.34 4.79 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.07 1.24 8.06 -51.93 -0.42 0.83 16 38 H 0.03 0.61 7.76 -51.93 -0.40 0.21 16 39 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.11 2.89 5.87 -51.93 -0.30 2.58 16 42 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.38 5.10 9.12 45.56 0.42 5.51 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -34.01 370.67 -7.81 -41.82 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.79 Total: 6.20 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -2.92 Total: 5.22 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.35 Total: -52.34 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.38 Total: -20.34 kcal Atomic # 9 Polarization: -3.01 SS G_CDS: 0.07 Total: -2.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.01 -7.81 -41.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958377395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.882 kcal (2) G-P(sol) polarization free energy of solvation -34.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds