Wall clock time and date at job start Sat Apr 11 2020 05:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38324 * 119.90131 * 2 1 4 4 C 1.38291 * 120.38310 * 180.02562 * 3 2 1 5 5 C 1.38243 * 120.18455 * 359.74016 * 4 3 2 6 6 F 1.35104 * 120.09144 * 180.27954 * 5 4 3 7 7 C 1.39880 * 119.81321 * 0.51490 * 5 4 3 8 8 C 1.47537 * 120.19330 * 179.76871 * 7 5 4 9 9 O 1.21593 * 119.99856 * 269.72253 * 8 7 5 10 10 N 1.34777 * 120.00133 * 89.44805 * 8 7 5 11 11 C 1.46504 * 119.99854 * 180.27865 * 10 8 7 12 12 C 1.53004 * 109.46928 * 179.97438 * 11 10 8 13 13 H 1.08991 * 110.64244 * 56.68439 * 12 11 10 14 14 C 1.54322 * 110.71720 * 293.54089 * 12 11 10 15 15 N 1.47021 * 107.27163 * 219.44371 * 14 12 11 16 16 C 1.36939 * 125.64557 * 178.90872 * 15 14 12 17 17 H 1.07992 * 120.00438 * 359.97438 * 16 15 14 18 18 C 1.38814 * 119.99501 * 180.02562 * 16 15 14 19 19 N 1.31617 * 120.00100 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99871 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47132 * 89.99788 * 20 18 16 22 22 H 1.48498 * 109.47191 * 210.00332 * 20 18 16 23 23 H 1.48504 * 109.47199 * 329.99945 * 20 18 16 24 24 C 1.47423 * 108.70210 * 358.94521 * 15 14 12 25 25 C 1.54905 * 104.83372 * 24.12462 * 24 15 14 26 26 H 1.09008 * 111.00237 * 81.06437 * 25 24 15 27 27 O 1.42892 * 111.00722 * 204.91684 * 25 24 15 28 28 C 1.38206 * 119.90751 * 180.02562 * 2 1 3 29 29 F 1.35101 * 120.09361 * 359.97438 * 28 2 1 30 30 H 1.08997 * 109.47207 * 269.97442 * 1 2 3 31 31 H 1.08993 * 109.47608 * 29.97964 * 1 2 3 32 32 H 1.09007 * 109.47084 * 149.97746 * 1 2 3 33 33 H 1.07998 * 119.81221 * 0.04295 * 3 2 1 34 34 H 1.07995 * 119.90405 * 180.02562 * 4 3 2 35 35 H 0.97000 * 119.99736 * 0.27139 * 10 8 7 36 36 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 37 37 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 38 38 H 1.09003 * 109.88600 * 338.86768 * 14 12 11 39 39 H 1.09005 * 109.88099 * 100.02830 * 14 12 11 40 40 H 0.97003 * 119.99808 * 179.97438 * 19 18 16 41 41 H 1.08997 * 110.36567 * 142.96793 * 24 15 14 42 42 H 1.09001 * 110.36518 * 265.18031 * 24 15 14 43 43 H 0.96699 * 114.00218 * 292.19962 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1991 0.0000 4 6 3.5794 1.2107 -0.0005 5 6 4.2845 0.0216 0.0043 6 9 5.6355 0.0352 0.0095 7 6 3.5953 -1.1956 -0.0011 8 6 4.3394 -2.4696 -0.0011 9 8 4.6457 -2.9947 -1.0541 10 7 4.6845 -3.0484 1.1661 11 6 5.4287 -4.3104 1.1660 12 6 5.6917 -4.7474 2.6085 13 1 4.7558 -4.8349 3.1602 14 6 6.6498 -3.7627 3.3112 15 7 7.5632 -4.5604 4.1423 16 6 8.5810 -4.0637 4.9122 17 1 8.7661 -3.0002 4.9419 18 6 9.3755 -4.9275 5.6536 19 7 9.1502 -6.2237 5.6169 20 14 10.7643 -4.2501 6.7032 21 1 10.2540 -3.9485 8.0647 22 1 11.8524 -5.2566 6.7940 23 1 11.2907 -3.0066 6.0852 24 6 7.2025 -5.9836 4.0090 25 6 6.4802 -6.0832 2.6423 26 1 7.1983 -6.1338 1.8237 27 8 5.5927 -7.2027 2.6123 28 6 2.1961 -1.1980 -0.0005 29 9 1.5206 -2.3680 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6519 2.1317 0.0007 34 1 4.1099 2.1514 -0.0001 35 1 4.4401 -2.6295 2.0061 36 1 4.8454 -5.0761 0.6546 37 1 6.3785 -4.1720 0.6497 38 1 7.2179 -3.2037 2.5675 39 1 6.0812 -3.0765 3.9389 40 1 9.7057 -6.8273 6.1347 41 1 8.0988 -6.6038 4.0106 42 1 6.5337 -6.2826 4.8160 43 1 6.0400 -8.0599 2.6318 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958377395.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:13 Heat of formation + Delta-G solvation = -148.532911 kcal Electronic energy + Delta-G solvation = -29501.424840 eV Core-core repulsion = 24989.268006 eV Total energy + Delta-G solvation = -4512.156834 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.23988 -50.19740 -41.25890 -40.03656 -39.46285 -36.71217 -36.26428 -34.21991 -33.68745 -32.35510 -31.27231 -29.33936 -27.77684 -27.41565 -25.90692 -24.52131 -23.20636 -22.42747 -21.69344 -21.26149 -19.46643 -19.05052 -18.77871 -18.57230 -18.27104 -17.55709 -17.07036 -16.89886 -16.78428 -16.53219 -16.33923 -15.92425 -15.70179 -15.59615 -15.41041 -14.97285 -14.79042 -14.41511 -14.27661 -14.10622 -14.06032 -13.73575 -13.33675 -13.18641 -13.14157 -12.92160 -12.79035 -12.72658 -12.65412 -12.47052 -12.36796 -11.94222 -11.91090 -11.56397 -11.27296 -10.86399 -10.76666 -10.37531 -10.20883 -9.70428 -8.96362 -7.82351 -5.28052 -0.38385 -0.18006 1.15128 1.46251 1.47799 1.56695 1.82451 2.17995 2.45579 2.61138 3.12518 3.23129 3.27097 3.30767 3.52023 3.60550 3.65237 3.70964 3.84783 3.95512 4.03033 4.32673 4.35253 4.39831 4.52060 4.57205 4.64109 4.75627 4.78280 4.79721 4.81489 4.88302 4.94413 5.08707 5.17049 5.20971 5.21884 5.39297 5.44954 5.62314 5.70100 6.17207 6.21772 6.82864 6.85365 7.04651 7.70258 8.33031 9.19683 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.002757 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.129486 B =10152.585919 C =11201.765595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.029 4.029 4 C -0.144 4.144 5 C 0.133 3.867 6 F -0.138 7.138 7 C -0.217 4.217 8 C 0.563 3.437 9 O -0.567 6.567 10 N -0.702 5.702 11 C 0.144 3.856 12 C -0.088 4.088 13 H 0.094 0.906 14 C 0.140 3.860 15 N -0.623 5.623 16 C -0.242 4.242 17 H 0.084 0.916 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.983 3.017 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.269 1.269 24 C 0.134 3.866 25 C 0.098 3.902 26 H 0.068 0.932 27 O -0.568 6.568 28 C 0.137 3.863 29 F -0.134 7.134 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.197 0.803 34 H 0.181 0.819 35 H 0.414 0.586 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.030 0.970 39 H 0.036 0.964 40 H 0.249 0.751 41 H 0.081 0.919 42 H -0.006 1.006 43 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.388 16.142 -11.381 26.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.123 4.123 3 C -0.047 4.047 4 C -0.163 4.163 5 C 0.113 3.887 6 F -0.116 7.116 7 C -0.222 4.222 8 C 0.348 3.652 9 O -0.447 6.447 10 N -0.352 5.352 11 C 0.021 3.979 12 C -0.107 4.107 13 H 0.112 0.888 14 C 0.015 3.985 15 N -0.350 5.350 16 C -0.370 4.370 17 H 0.102 0.898 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.811 3.189 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.194 1.194 24 C 0.009 3.991 25 C 0.037 3.963 26 H 0.086 0.914 27 O -0.375 6.375 28 C 0.117 3.883 29 F -0.112 7.112 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.081 0.919 33 H 0.214 0.786 34 H 0.198 0.802 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.048 0.952 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.012 0.988 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -18.422 16.096 -12.006 27.251 hybrid contribution 1.652 -0.981 1.155 2.242 sum -16.770 15.114 -10.851 25.048 Atomic orbital electron populations 1.20870 0.87071 1.04812 1.04331 1.20358 0.99187 0.90455 1.02287 1.21480 0.92282 0.98660 0.92239 1.21589 0.95547 0.96841 1.02286 1.17685 0.76819 0.93159 1.01010 1.91555 1.29290 1.97282 1.93516 1.19832 0.93901 0.93512 1.14914 1.18226 0.78736 0.84316 0.83896 1.90791 1.55991 1.65348 1.32521 1.45950 1.56085 1.24632 1.08543 1.21269 0.96092 0.84798 0.95773 1.22231 0.99328 0.94316 0.94838 0.88817 1.21490 0.90740 0.93438 0.92821 1.44595 1.34768 1.02871 1.52779 1.19466 1.05769 0.92740 1.19037 0.89845 1.25657 1.02319 0.95898 1.01922 1.70000 1.42047 1.02257 1.45510 0.85016 0.78274 0.77263 0.78396 1.21277 1.21886 1.19384 1.22318 0.98016 0.86784 0.92010 1.22977 0.90401 0.85640 0.97288 0.91405 1.86342 1.36708 1.17318 1.97158 1.17418 0.86816 0.82504 1.01540 1.91520 1.79569 1.46670 1.93488 0.89139 0.87515 0.91900 0.78613 0.80204 0.74971 0.90777 0.91834 0.95152 0.94647 0.94148 0.90137 0.98807 0.75535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 9.83 71.24 0.70 -0.13 16 2 C -0.12 -1.53 5.88 -19.85 -0.12 -1.65 16 3 C -0.03 -0.22 9.68 22.30 0.22 0.00 16 4 C -0.14 -1.69 10.01 22.28 0.22 -1.46 16 5 C 0.13 2.87 7.29 22.67 0.17 3.03 16 6 F -0.14 -3.65 16.83 44.97 0.76 -2.89 16 7 C -0.22 -5.50 5.64 -20.02 -0.11 -5.61 16 8 C 0.56 18.22 6.54 86.70 0.57 18.79 16 9 O -0.57 -22.74 17.11 -4.01 -0.07 -22.81 16 10 N -0.70 -20.77 5.40 -466.26 -2.52 -23.28 16 11 C 0.14 4.66 4.99 86.38 0.43 5.09 16 12 C -0.09 -3.09 2.75 -9.61 -0.03 -3.12 16 13 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 14 C 0.14 5.72 6.52 86.73 0.57 6.28 16 15 N -0.62 -32.00 3.39 -692.00 -2.35 -34.34 16 16 C -0.24 -13.45 10.27 84.03 0.86 -12.59 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -3.67 5.49 84.86 0.47 -3.21 16 19 N -0.95 -55.82 10.09 21.65 0.22 -55.61 16 20 Si 0.98 45.24 29.55 68.60 2.03 47.26 16 21 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.13 6.60 5.62 86.85 0.49 7.09 16 25 C 0.10 3.75 3.88 31.98 0.12 3.87 16 26 H 0.07 2.55 8.05 -2.38 -0.02 2.53 16 27 O -0.57 -19.40 13.47 -148.98 -2.01 -21.41 16 28 C 0.14 2.92 7.23 22.67 0.16 3.08 16 29 F -0.13 -3.32 16.03 44.97 0.72 -2.60 16 30 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.11 0.17 8.08 -2.39 -0.02 0.15 16 32 H 0.06 0.63 7.63 -2.38 -0.02 0.61 16 33 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 34 H 0.18 1.02 8.06 -2.91 -0.02 1.00 16 35 H 0.41 10.48 8.31 -92.71 -0.77 9.71 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 37 H 0.06 2.20 8.06 -2.39 -0.02 2.18 16 38 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16 39 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.08 4.43 5.87 -2.39 -0.01 4.42 16 42 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 43 H 0.39 10.40 9.12 -74.06 -0.68 9.73 16 Total: -1.00 -77.29 370.67 1.13 -76.16 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -0.37 Total: 20.04 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 4.72 Total: 19.48 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -4.65 Total: -113.23 kcal Atomic # 8 Polarization: -42.14 SS G_CDS: -2.08 Total: -44.22 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 1.48 Total: -5.49 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -77.29 1.13 -76.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958377395.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.377 kcal (2) G-P(sol) polarization free energy of solvation -77.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds