Wall clock time and date at job start Sat Apr 11 2020 05:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38449 * 119.84337 * 2 1 4 4 C 1.37842 * 120.24314 * 179.73994 * 3 2 1 5 5 C 1.39689 * 119.92183 * 0.53799 * 4 3 2 6 6 C 1.47699 * 120.15345 * 179.72002 * 5 4 3 7 7 O 1.21569 * 119.99845 * 179.72095 * 6 5 4 8 8 N 1.34773 * 119.99860 * 359.72337 * 6 5 4 9 9 C 1.46500 * 119.99598 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47069 * 179.97438 * 9 8 6 11 11 H 1.08994 * 110.64580 * 303.31117 * 10 9 8 12 12 C 1.54329 * 110.71990 * 66.45518 * 10 9 8 13 13 N 1.47020 * 107.27324 * 140.55459 * 12 10 9 14 14 C 1.36942 * 125.64687 * 181.02503 * 13 12 10 15 15 H 1.07998 * 119.99742 * 13.63812 * 14 13 12 16 16 C 1.38807 * 119.99624 * 193.63224 * 14 13 12 17 17 N 1.31619 * 120.00377 * 27.26897 * 16 14 13 18 18 Si 1.86802 * 120.00032 * 207.26171 * 16 14 13 19 19 H 1.48504 * 109.46876 * 60.00638 * 18 16 14 20 20 H 1.48503 * 109.47162 * 180.02562 * 18 16 14 21 21 H 1.48490 * 109.47392 * 300.00946 * 18 16 14 22 22 C 1.47422 * 108.70270 * 1.28804 * 13 12 10 23 23 C 1.55133 * 104.72398 * 335.55365 * 22 13 12 24 24 H 1.08994 * 110.90429 * 155.27458 * 23 22 13 25 25 O 1.42905 * 111.22468 * 279.17895 * 23 22 13 26 26 C 1.39766 * 119.69003 * 359.43803 * 5 4 3 27 27 F 1.35096 * 120.12017 * 180.25249 * 26 5 4 28 28 C 1.38382 * 119.84213 * 179.97438 * 2 1 3 29 29 F 1.35097 * 119.96291 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47570 * 270.02454 * 1 2 3 31 31 H 1.09003 * 109.47116 * 30.02529 * 1 2 3 32 32 H 1.08996 * 109.47153 * 150.02283 * 1 2 3 33 33 H 1.07997 * 119.87676 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.04224 * 180.27707 * 4 3 2 35 35 H 0.96989 * 120.00525 * 359.97438 * 8 6 5 36 36 H 1.09003 * 109.47100 * 59.99877 * 9 8 6 37 37 H 1.09001 * 109.47333 * 299.99723 * 9 8 6 38 38 H 1.09003 * 109.87806 * 21.13523 * 12 10 9 39 39 H 1.08992 * 109.88325 * 259.97617 * 12 10 9 40 40 H 0.97005 * 119.99700 * 5.84526 * 17 16 14 41 41 H 1.08997 * 110.36712 * 94.48491 * 22 13 12 42 42 H 1.09000 * 110.36633 * 216.80461 * 22 13 12 43 43 H 0.96701 * 113.99370 * 292.20510 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5743 1.2105 0.0054 5 6 4.2796 0.0047 -0.0005 6 6 5.7566 0.0091 -0.0010 7 8 6.3675 -1.0419 -0.0009 8 7 6.4269 1.1783 -0.0014 9 6 7.8919 1.1826 -0.0024 10 6 8.3977 2.6265 -0.0034 11 1 7.9955 3.1741 -0.8556 12 6 8.0349 3.3330 1.3199 13 7 9.1839 4.1689 1.6978 14 6 9.2710 4.9440 2.8233 15 1 8.5601 4.8129 3.6256 16 6 10.2732 5.8982 2.9329 17 7 10.7824 6.4452 1.8495 18 14 10.8990 6.4061 4.6181 19 1 11.4549 5.2201 5.3177 20 1 11.9608 7.4327 4.4630 21 1 9.7785 6.9696 5.4131 22 6 10.2240 4.0392 0.6611 23 6 9.9488 2.6649 -0.0039 24 1 10.3399 2.6397 -1.0209 25 8 10.4879 1.5956 0.7760 26 6 3.5810 -1.2058 0.0001 27 9 4.2544 -2.3771 -0.0004 28 6 2.1956 -1.2003 0.0005 29 9 1.5161 -2.3680 0.0005 30 1 -0.3634 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6514 2.1335 -0.0004 34 1 4.1085 2.1492 0.0099 35 1 5.9396 2.0168 -0.0017 36 1 8.2561 0.6698 -0.8927 37 1 8.2574 0.6698 0.8873 38 1 7.8448 2.5915 2.0959 39 1 7.1532 3.9575 1.1771 40 1 10.4009 6.2457 0.9802 41 1 10.1328 4.8422 -0.0703 42 1 11.2151 4.0490 1.1148 43 1 11.4543 1.5786 0.8052 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958422474.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:16 Heat of formation + Delta-G solvation = -122.187110 kcal Electronic energy + Delta-G solvation = -29270.903656 eV Core-core repulsion = 24759.889262 eV Total energy + Delta-G solvation = -4511.014394 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.75008 -48.79678 -40.35109 -38.98201 -38.30247 -35.12652 -34.83492 -33.43684 -32.29524 -30.82773 -29.79302 -28.33275 -27.74371 -25.35185 -23.91336 -23.25554 -22.85315 -21.01631 -20.29809 -19.93300 -18.58474 -17.77073 -17.73891 -17.33313 -16.88781 -16.73516 -16.42056 -15.60527 -15.41673 -15.05713 -14.95228 -14.61488 -14.59640 -14.41054 -13.99357 -13.89654 -13.75131 -13.56889 -13.43178 -13.23435 -12.79399 -12.58965 -12.31159 -12.24182 -12.05955 -12.01843 -11.61242 -11.07286 -10.79652 -10.72988 -10.59279 -10.44582 -10.04259 -9.99891 -9.70921 -9.37447 -9.34573 -9.18931 -9.02265 -8.47276 -6.99900 -6.14756 -3.16865 0.12215 0.48923 2.39954 2.85719 3.23911 3.38190 3.47381 3.52502 3.69556 3.92653 4.08302 4.12848 4.36924 4.44098 4.49185 4.57405 4.83963 4.93281 5.05181 5.05740 5.12076 5.14761 5.25211 5.28540 5.43671 5.46537 5.50253 5.56020 5.65061 5.68733 5.81619 5.86770 6.15224 6.19398 6.22881 6.33292 6.45976 6.66139 6.79233 6.84087 7.35469 7.70103 8.03387 8.07326 8.42540 8.96199 9.76131 10.29493 11.18609 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017421 B = 0.002423 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.898266 B =11551.663936 C =12461.180243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.111 4.111 4 C -0.062 4.062 5 C -0.149 4.149 6 C 0.555 3.445 7 O -0.522 6.522 8 N -0.717 5.717 9 C 0.140 3.860 10 C -0.107 4.107 11 H 0.089 0.911 12 C 0.145 3.855 13 N -0.597 5.597 14 C -0.332 4.332 15 H 0.066 0.934 16 C -0.027 4.027 17 N -0.922 5.922 18 Si 1.063 2.937 19 H -0.294 1.294 20 H -0.285 1.285 21 H -0.293 1.293 22 C 0.118 3.882 23 C 0.092 3.908 24 H 0.061 0.939 25 O -0.554 6.554 26 C 0.132 3.868 27 F -0.103 7.103 28 C 0.052 3.948 29 F -0.124 7.124 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.020 0.980 40 H 0.267 0.733 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.056 -10.314 -7.982 22.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.080 4.080 5 C -0.153 4.153 6 C 0.341 3.659 7 O -0.399 6.399 8 N -0.369 5.369 9 C 0.018 3.982 10 C -0.127 4.127 11 H 0.107 0.893 12 C 0.019 3.981 13 N -0.324 5.324 14 C -0.460 4.460 15 H 0.084 0.916 16 C -0.227 4.227 17 N -0.564 5.564 18 Si 0.893 3.107 19 H -0.221 1.221 20 H -0.211 1.211 21 H -0.220 1.220 22 C -0.008 4.008 23 C 0.032 3.968 24 H 0.079 0.921 25 O -0.359 6.359 26 C 0.110 3.890 27 F -0.081 7.081 28 C 0.032 3.968 29 F -0.102 7.102 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.164 0.836 35 H 0.235 0.765 36 H 0.086 0.914 37 H 0.103 0.897 38 H 0.049 0.951 39 H 0.038 0.962 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.076 0.924 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -17.091 -10.299 -6.995 21.145 hybrid contribution -0.818 -0.689 -0.845 1.363 sum -17.909 -10.988 -7.840 22.426 Atomic orbital electron populations 1.20845 0.88965 1.04116 1.03653 1.20068 0.97719 0.90957 0.98147 1.20961 0.93641 0.97617 1.00673 1.21344 0.94382 0.96922 0.95387 1.20010 0.94625 0.92388 1.08298 1.17808 0.85999 0.84454 0.77658 1.90864 1.69187 1.31008 1.48808 1.45947 1.08420 1.07897 1.74656 1.21273 0.77070 0.96598 1.03299 1.22527 0.95125 0.95001 1.00020 0.89322 1.21328 0.91216 0.93078 0.92431 1.44385 1.11875 1.52186 1.23969 1.19756 1.17684 1.15367 0.93146 0.91615 1.25706 0.97907 0.94218 1.04903 1.70821 1.45969 1.40170 0.99410 0.83543 0.76480 0.75972 0.74709 1.22098 1.21075 1.22026 1.22276 0.94544 0.92285 0.91719 1.23009 0.92334 0.88454 0.93037 0.92132 1.86439 1.25340 1.49994 1.74117 1.17625 0.87970 0.82243 1.01124 1.91633 1.79734 1.43975 1.92722 1.17350 0.87758 0.82625 1.09065 1.91528 1.79255 1.45318 1.94126 0.89824 0.90044 0.90609 0.83404 0.83631 0.76513 0.91393 0.89741 0.95079 0.96189 0.92109 0.94962 0.92372 0.77698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.82 36.00 0.35 -0.23 16 2 C -0.07 -0.51 5.89 -104.49 -0.62 -1.13 16 3 C -0.11 -0.71 9.67 -39.65 -0.38 -1.09 16 4 C -0.06 -0.49 9.54 -39.18 -0.37 -0.86 16 5 C -0.15 -1.74 5.88 -104.92 -0.62 -2.36 16 6 C 0.56 8.05 7.77 -12.40 -0.10 7.95 16 7 O -0.52 -9.69 15.34 5.30 0.08 -9.60 16 8 N -0.72 -9.19 5.35 -61.30 -0.33 -9.52 16 9 C 0.14 2.10 4.59 -4.04 -0.02 2.08 16 10 C -0.11 -1.69 2.94 -88.78 -0.26 -1.95 16 11 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 12 C 0.15 2.87 6.52 -3.06 -0.02 2.85 16 13 N -0.60 -14.71 3.33 -169.94 -0.57 -15.27 16 14 C -0.33 -9.26 10.05 -15.06 -0.15 -9.41 16 15 H 0.07 1.84 7.96 -52.49 -0.42 1.42 16 16 C -0.03 -0.75 5.09 -17.43 -0.09 -0.84 16 17 N -0.92 -27.19 12.82 55.49 0.71 -26.48 16 18 Si 1.06 25.15 30.00 -169.99 -5.10 20.05 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.12 2.58 4.97 -2.41 -0.01 2.57 16 23 C 0.09 1.56 4.17 -24.46 -0.10 1.46 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 25 O -0.55 -9.47 12.23 -35.23 -0.43 -9.90 16 26 C 0.13 1.67 7.29 -38.90 -0.28 1.38 16 27 F -0.10 -1.58 15.46 2.25 0.03 -1.55 16 28 C 0.05 0.55 7.24 -39.41 -0.29 0.26 16 29 F -0.12 -1.37 16.37 2.25 0.04 -1.33 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.07 0.39 7.62 -51.93 -0.40 -0.01 16 33 H 0.15 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.15 0.83 6.40 -52.49 -0.34 0.49 16 35 H 0.40 4.04 6.36 -40.82 -0.26 3.78 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.50 7.44 -51.93 -0.39 1.12 16 38 H 0.03 0.66 7.77 -51.93 -0.40 0.25 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.27 7.80 5.83 -40.82 -0.24 7.56 16 41 H 0.03 0.74 6.84 -51.93 -0.36 0.39 16 42 H 0.06 1.41 7.73 -51.93 -0.40 1.01 16 43 H 0.38 5.04 9.12 45.56 0.42 5.46 16 LS Contribution 363.56 15.07 5.48 5.48 Total: -1.00 -35.79 363.56 -7.56 -43.35 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.53 Total: 4.07 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.95 Total: 0.70 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.18 Total: -51.27 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.35 Total: -19.50 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.07 Total: -2.88 kcal Atomic # 14 Polarization: 25.15 SS G_CDS: -5.10 Total: 20.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.79 -7.56 -43.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958422474.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.835 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds