Wall clock time and date at job start Sat Apr 11 2020 05:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38450 * 119.83797 * 2 1 4 4 C 1.37846 * 120.23977 * 179.97438 * 3 2 1 5 5 C 1.39679 * 119.92398 * 0.02562 * 4 3 2 6 6 C 1.47699 * 120.15503 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00162 * 179.97438 * 6 5 4 8 8 N 1.34776 * 120.00326 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47358 * 179.97438 * 9 8 6 11 11 H 1.09008 * 110.88445 * 57.42402 * 10 9 8 12 12 C 1.54908 * 111.00368 * 293.54522 * 10 9 8 13 13 N 1.47425 * 104.92961 * 204.85960 * 12 10 9 14 14 C 1.36938 * 125.65179 * 204.15650 * 13 12 10 15 15 H 1.08005 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47204 * 119.99715 * 18 16 14 21 21 H 1.48508 * 109.46889 * 239.99519 * 18 16 14 22 22 C 1.47290 * 108.55742 * 24.15407 * 13 12 10 23 23 C 1.54325 * 107.30599 * 358.92448 * 22 13 12 24 24 H 1.08994 * 110.87038 * 96.25177 * 23 22 13 25 25 O 1.42903 * 110.72138 * 219.45307 * 23 22 13 26 26 C 1.39768 * 119.69059 * 0.25520 * 5 4 3 27 27 F 1.35099 * 120.12253 * 179.72933 * 26 5 4 28 28 C 1.38375 * 119.84598 * 179.97438 * 2 1 3 29 29 F 1.35101 * 119.96151 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47108 * 90.00007 * 1 2 3 31 31 H 1.09003 * 109.46877 * 210.00058 * 1 2 3 32 32 H 1.09003 * 109.46921 * 329.99827 * 1 2 3 33 33 H 1.08006 * 119.88254 * 0.02780 * 3 2 1 34 34 H 1.08000 * 120.03732 * 179.97438 * 4 3 2 35 35 H 0.97004 * 119.99840 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47369 * 59.99227 * 9 8 6 37 37 H 1.09004 * 109.47192 * 299.99245 * 9 8 6 38 38 H 1.09002 * 110.36632 * 323.75356 * 12 10 9 39 39 H 1.08995 * 110.36781 * 85.96593 * 12 10 9 40 40 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.85762 * 239.50064 * 22 13 12 42 42 H 1.08995 * 110.00297 * 118.43011 * 22 13 12 43 43 H 0.96696 * 113.99847 * 293.52357 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2010 0.0000 4 6 3.5743 1.2106 0.0005 5 6 4.2796 0.0050 0.0005 6 6 5.7566 0.0094 0.0005 7 8 6.3676 -1.0416 0.0010 8 7 6.4270 1.1785 0.0011 9 6 7.8920 1.1829 0.0005 10 6 8.3977 2.6269 0.0006 11 1 8.0090 3.1747 0.8591 12 6 8.0355 3.3422 -1.3249 13 7 9.0384 4.4137 -1.4646 14 6 8.8791 5.5669 -2.1855 15 1 7.9553 5.7499 -2.7143 16 6 9.9053 6.5003 -2.2376 17 7 11.0312 6.2770 -1.5937 18 14 9.6875 8.0738 -3.2205 19 1 8.3408 8.0843 -3.8461 20 1 9.8234 9.2445 -2.3171 21 1 10.7257 8.1431 -4.2802 22 6 10.2386 4.0351 -0.6992 23 6 9.9482 2.6732 -0.0340 24 1 10.3451 1.8551 -0.6350 25 8 10.4849 2.6324 1.2897 26 6 3.5811 -1.2057 -0.0054 27 9 4.2545 -2.3769 -0.0110 28 6 2.1957 -1.2002 0.0005 29 9 1.5163 -2.3679 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6513 2.1337 0.0005 34 1 4.1084 2.1494 0.0001 35 1 5.9396 2.0172 0.0011 36 1 8.2565 0.6707 -0.8898 37 1 8.2572 0.6697 0.8901 38 1 8.1037 2.6472 -2.1619 39 1 7.0332 3.7662 -1.2655 40 1 11.7482 6.9294 -1.6298 41 1 10.4421 4.7851 0.0651 42 1 11.0945 3.9460 -1.3681 43 1 11.4510 2.6588 1.3234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958422477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:25 Heat of formation + Delta-G solvation = -122.879542 kcal Electronic energy + Delta-G solvation = -29096.939698 eV Core-core repulsion = 24585.895278 eV Total energy + Delta-G solvation = -4511.044420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.73976 -48.78731 -40.33488 -38.88342 -38.13210 -35.24928 -34.73456 -33.41179 -32.22210 -30.81783 -29.86901 -28.21851 -27.45346 -25.57036 -23.87094 -23.24154 -22.80002 -20.98731 -20.27927 -20.02387 -18.58360 -17.74946 -17.34683 -16.99114 -16.75780 -16.72578 -16.37262 -15.66854 -15.44084 -15.17028 -14.96836 -14.85008 -14.59518 -14.27022 -14.00490 -13.89157 -13.69509 -13.51058 -13.24879 -12.77671 -12.71207 -12.49496 -12.25260 -12.17578 -12.02114 -11.96898 -11.51966 -11.28463 -11.03693 -10.87976 -10.63880 -10.20216 -10.07049 -9.87904 -9.84312 -9.36863 -9.26910 -9.17611 -9.02314 -8.71963 -6.96016 -5.81297 -3.15947 0.13421 0.50372 2.40814 2.86199 3.24509 3.33833 3.38992 3.39400 3.41877 3.93857 4.09496 4.14592 4.37113 4.40658 4.47493 4.68436 4.84947 4.95692 5.06459 5.08749 5.13122 5.29447 5.38317 5.44517 5.45476 5.48120 5.57381 5.61729 5.70578 5.80563 5.95369 5.97955 6.14423 6.23764 6.28286 6.32430 6.46278 6.75101 7.33551 7.36623 7.43720 7.69240 8.05756 8.12874 8.15049 9.09664 9.70600 10.34846 11.30572 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002468 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.338789 B =11341.376717 C =12761.550941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.111 4.111 4 C -0.061 4.061 5 C -0.149 4.149 6 C 0.556 3.444 7 O -0.524 6.524 8 N -0.714 5.714 9 C 0.134 3.866 10 C -0.109 4.109 11 H 0.090 0.910 12 C 0.141 3.859 13 N -0.602 5.602 14 C -0.231 4.231 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.922 5.922 18 Si 0.914 3.086 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.151 3.849 23 C 0.083 3.917 24 H 0.057 0.943 25 O -0.567 6.567 26 C 0.132 3.868 27 F -0.103 7.103 28 C 0.052 3.948 29 F -0.124 7.124 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.401 0.599 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.042 0.958 40 H 0.253 0.747 41 H 0.058 0.942 42 H 0.046 0.954 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.118 -10.944 4.900 21.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.080 4.080 5 C -0.153 4.153 6 C 0.341 3.659 7 O -0.401 6.401 8 N -0.366 5.366 9 C 0.010 3.990 10 C -0.128 4.128 11 H 0.109 0.891 12 C 0.015 3.985 13 N -0.329 5.329 14 C -0.359 4.359 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.569 5.569 18 Si 0.744 3.256 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.026 3.974 23 C 0.023 3.977 24 H 0.075 0.925 25 O -0.371 6.371 26 C 0.110 3.890 27 F -0.081 7.081 28 C 0.032 3.968 29 F -0.103 7.103 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.237 0.763 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -18.144 -11.621 4.999 22.119 hybrid contribution 0.430 0.896 -0.718 1.226 sum -17.715 -10.724 4.281 21.146 Atomic orbital electron populations 1.20847 0.88983 1.04126 1.03630 1.20070 0.97713 0.90968 0.98135 1.20970 0.93662 0.97616 1.00632 1.21358 0.94385 0.96962 0.95270 1.19994 0.94592 0.92382 1.08355 1.17816 0.86025 0.84433 0.77591 1.90856 1.69202 1.31052 1.48984 1.45894 1.08224 1.07975 1.74516 1.21435 0.77763 0.97152 1.02609 1.22621 0.95526 0.94005 1.00679 0.89133 1.21608 0.93727 0.90609 0.92602 1.44366 1.12081 1.18409 1.58089 1.19100 1.00123 0.93645 1.22994 0.90173 1.24825 0.96203 0.98959 1.00412 1.69945 1.05246 1.35702 1.46005 0.86021 0.77362 0.83006 0.79199 1.20442 1.21682 1.21699 1.21868 0.90052 0.90495 0.94985 1.23115 0.92144 0.99133 0.83288 0.92474 1.86419 1.25622 1.97275 1.27830 1.17623 0.87963 0.82234 1.01153 1.91632 1.79737 1.43994 1.92734 1.17348 0.87766 0.82616 1.09104 1.91528 1.79266 1.45325 1.94135 0.89842 0.90617 0.90036 0.83384 0.83533 0.76291 0.91067 0.90848 0.95858 0.94011 0.93677 0.92360 0.93591 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 9.82 36.01 0.35 -0.23 16 2 C -0.07 -0.50 5.89 -104.49 -0.62 -1.12 16 3 C -0.11 -0.70 9.67 -39.65 -0.38 -1.08 16 4 C -0.06 -0.48 9.54 -39.19 -0.37 -0.85 16 5 C -0.15 -1.70 5.88 -104.92 -0.62 -2.32 16 6 C 0.56 7.84 7.77 -12.40 -0.10 7.75 16 7 O -0.52 -9.44 15.34 5.31 0.08 -9.36 16 8 N -0.71 -8.95 5.36 -61.30 -0.33 -9.28 16 9 C 0.13 1.93 5.12 -4.05 -0.02 1.91 16 10 C -0.11 -1.78 2.83 -88.47 -0.25 -2.03 16 11 H 0.09 1.53 8.14 -51.92 -0.42 1.10 16 12 C 0.14 2.65 6.40 -2.53 -0.02 2.63 16 13 N -0.60 -14.59 3.40 -169.86 -0.58 -15.17 16 14 C -0.23 -6.15 10.28 -15.06 -0.15 -6.31 16 15 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 16 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 17 N -0.92 -26.26 10.33 55.49 0.57 -25.68 16 18 Si 0.91 21.40 29.55 -169.99 -5.02 16.37 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.15 3.49 5.16 -2.92 -0.02 3.48 16 23 C 0.08 1.50 3.80 -24.90 -0.09 1.40 16 24 H 0.06 0.96 8.04 -51.93 -0.42 0.55 16 25 O -0.57 -9.54 13.39 -35.23 -0.47 -10.02 16 26 C 0.13 1.64 7.29 -38.90 -0.28 1.35 16 27 F -0.10 -1.56 15.46 2.25 0.03 -1.52 16 28 C 0.05 0.54 7.24 -39.42 -0.29 0.25 16 29 F -0.12 -1.36 16.37 2.25 0.04 -1.32 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.39 7.62 -51.93 -0.40 -0.01 16 32 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 33 H 0.15 0.51 8.06 -52.48 -0.42 0.08 16 34 H 0.15 0.82 6.40 -52.49 -0.34 0.49 16 35 H 0.40 4.02 6.37 -40.82 -0.26 3.76 16 36 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.06 1.52 7.31 -51.93 -0.38 1.14 16 42 H 0.05 1.17 7.51 -51.93 -0.39 0.78 16 43 H 0.38 4.91 9.12 45.56 0.42 5.33 16 LS Contribution 366.02 15.07 5.52 5.52 Total: -1.00 -34.02 366.02 -7.79 -41.80 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -4.68 Total: 4.12 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -2.95 Total: 4.53 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.33 Total: -50.13 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.39 Total: -19.38 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.07 Total: -2.84 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.02 -7.79 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958422477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.075 kcal (2) G-P(sol) polarization free energy of solvation -34.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds