Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38450 * 119.83797 * 2 1 4 4 C 1.37846 * 120.23977 * 179.97438 * 3 2 1 5 5 C 1.39679 * 119.92398 * 0.02562 * 4 3 2 6 6 C 1.47699 * 120.15503 * 179.97438 * 5 4 3 7 7 O 1.21567 * 120.00162 * 179.97438 * 6 5 4 8 8 N 1.34776 * 120.00326 * 0.02562 * 6 5 4 9 9 C 1.46494 * 120.00390 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47358 * 179.97438 * 9 8 6 11 11 H 1.09008 * 110.88445 * 57.42402 * 10 9 8 12 12 C 1.54908 * 111.00368 * 293.54522 * 10 9 8 13 13 N 1.47425 * 104.92961 * 204.85960 * 12 10 9 14 14 C 1.36938 * 125.65179 * 204.15650 * 13 12 10 15 15 H 1.08005 * 119.99558 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00146 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00086 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47268 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.47204 * 119.99715 * 18 16 14 21 21 H 1.48508 * 109.46889 * 239.99519 * 18 16 14 22 22 C 1.47290 * 108.55742 * 24.15407 * 13 12 10 23 23 C 1.54325 * 107.30599 * 358.92448 * 22 13 12 24 24 H 1.08994 * 110.87038 * 96.25177 * 23 22 13 25 25 O 1.42903 * 110.72138 * 219.45307 * 23 22 13 26 26 C 1.39768 * 119.69059 * 0.25520 * 5 4 3 27 27 F 1.35099 * 120.12253 * 179.72933 * 26 5 4 28 28 C 1.38375 * 119.84598 * 179.97438 * 2 1 3 29 29 F 1.35101 * 119.96151 * 0.02562 * 28 2 1 30 30 H 1.08998 * 109.47108 * 90.00007 * 1 2 3 31 31 H 1.09003 * 109.46877 * 210.00058 * 1 2 3 32 32 H 1.09003 * 109.46921 * 329.99827 * 1 2 3 33 33 H 1.08006 * 119.88254 * 0.02780 * 3 2 1 34 34 H 1.08000 * 120.03732 * 179.97438 * 4 3 2 35 35 H 0.97004 * 119.99840 * 359.97438 * 8 6 5 36 36 H 1.08994 * 109.47369 * 59.99227 * 9 8 6 37 37 H 1.09004 * 109.47192 * 299.99245 * 9 8 6 38 38 H 1.09002 * 110.36632 * 323.75356 * 12 10 9 39 39 H 1.08995 * 110.36781 * 85.96593 * 12 10 9 40 40 H 0.96999 * 120.00175 * 180.02562 * 17 16 14 41 41 H 1.09004 * 109.85762 * 239.50064 * 22 13 12 42 42 H 1.08995 * 110.00297 * 118.43011 * 22 13 12 43 43 H 0.96696 * 113.99847 * 293.52357 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2010 0.0000 4 6 3.5743 1.2106 0.0005 5 6 4.2796 0.0050 0.0005 6 6 5.7566 0.0094 0.0005 7 8 6.3676 -1.0416 0.0010 8 7 6.4270 1.1785 0.0011 9 6 7.8920 1.1829 0.0005 10 6 8.3977 2.6269 0.0006 11 1 8.0090 3.1747 0.8591 12 6 8.0355 3.3422 -1.3249 13 7 9.0384 4.4137 -1.4646 14 6 8.8791 5.5669 -2.1855 15 1 7.9553 5.7499 -2.7143 16 6 9.9053 6.5003 -2.2376 17 7 11.0312 6.2770 -1.5937 18 14 9.6875 8.0738 -3.2205 19 1 8.3408 8.0843 -3.8461 20 1 9.8234 9.2445 -2.3171 21 1 10.7257 8.1431 -4.2802 22 6 10.2386 4.0351 -0.6992 23 6 9.9482 2.6732 -0.0340 24 1 10.3451 1.8551 -0.6350 25 8 10.4849 2.6324 1.2897 26 6 3.5811 -1.2057 -0.0054 27 9 4.2545 -2.3769 -0.0110 28 6 2.1957 -1.2002 0.0005 29 9 1.5163 -2.3679 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 1.6513 2.1337 0.0005 34 1 4.1084 2.1494 0.0001 35 1 5.9396 2.0172 0.0011 36 1 8.2565 0.6707 -0.8898 37 1 8.2572 0.6697 0.8901 38 1 8.1037 2.6472 -2.1619 39 1 7.0332 3.7662 -1.2655 40 1 11.7482 6.9294 -1.6298 41 1 10.4421 4.7851 0.0651 42 1 11.0945 3.9460 -1.3681 43 1 11.4510 2.6588 1.3234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958422477.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -147.687416 kcal Electronic energy + Delta-G solvation = -29098.015448 eV Core-core repulsion = 24585.895278 eV Total energy + Delta-G solvation = -4512.120170 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.60021 -49.68287 -41.31737 -39.99776 -39.35587 -36.65032 -36.18545 -34.30890 -33.73779 -31.68898 -31.24711 -29.46703 -28.63078 -27.14203 -25.29121 -23.91702 -23.74921 -22.33823 -21.69140 -21.36115 -19.57619 -18.84338 -18.60811 -18.25021 -17.99043 -17.58567 -17.38492 -17.03634 -16.58142 -16.45704 -16.09328 -15.76590 -15.71047 -15.59132 -15.28914 -14.84860 -14.73876 -14.39998 -14.31336 -14.14447 -13.99174 -13.69801 -13.34865 -13.20329 -13.08393 -12.79586 -12.75202 -12.72259 -12.68388 -12.44583 -12.24023 -11.89223 -11.77079 -11.50978 -11.16126 -10.81486 -10.73181 -10.30511 -9.92157 -9.89877 -8.92214 -7.85132 -5.21316 -0.60524 -0.19635 1.48752 1.49202 1.56295 1.59422 1.86238 2.40860 2.49457 2.63248 3.20026 3.24685 3.33008 3.36895 3.52872 3.58507 3.65772 3.74876 3.87997 3.90544 4.15350 4.34630 4.39267 4.40819 4.48013 4.61356 4.70483 4.75882 4.76969 4.87983 4.88988 4.95958 4.96469 5.15314 5.17139 5.21671 5.34284 5.43992 5.49609 5.60276 5.72360 6.17299 6.37171 6.88271 7.03446 7.07860 7.75170 8.38942 9.25631 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015558 B = 0.002468 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.338789 B =11341.376717 C =12761.550941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.094 4.094 4 C -0.049 4.049 5 C -0.166 4.166 6 C 0.555 3.445 7 O -0.572 6.572 8 N -0.702 5.702 9 C 0.146 3.854 10 C -0.089 4.089 11 H 0.092 0.908 12 C 0.138 3.862 13 N -0.625 5.625 14 C -0.237 4.237 15 H 0.091 0.909 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.978 3.022 19 H -0.260 1.260 20 H -0.294 1.294 21 H -0.297 1.297 22 C 0.161 3.839 23 C 0.095 3.905 24 H 0.073 0.927 25 O -0.570 6.570 26 C 0.098 3.902 27 F -0.131 7.131 28 C 0.036 3.964 29 F -0.134 7.134 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.192 0.808 34 H 0.175 0.825 35 H 0.416 0.584 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.065 0.935 40 H 0.246 0.754 41 H 0.021 0.979 42 H 0.011 0.989 43 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.252 -9.542 4.844 23.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.111 4.111 4 C -0.067 4.067 5 C -0.171 4.171 6 C 0.343 3.657 7 O -0.453 6.453 8 N -0.354 5.354 9 C 0.022 3.978 10 C -0.109 4.109 11 H 0.110 0.890 12 C 0.013 3.987 13 N -0.352 5.352 14 C -0.366 4.366 15 H 0.109 0.891 16 C -0.262 4.262 17 N -0.603 5.603 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.221 1.221 21 H -0.224 1.224 22 C 0.035 3.965 23 C 0.035 3.965 24 H 0.091 0.909 25 O -0.377 6.377 26 C 0.076 3.924 27 F -0.110 7.110 28 C 0.016 3.984 29 F -0.113 7.113 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.210 0.790 34 H 0.192 0.808 35 H 0.254 0.746 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.029 0.971 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -21.322 -10.214 4.947 24.154 hybrid contribution 1.327 0.477 -0.691 1.571 sum -19.994 -9.737 4.256 22.643 Atomic orbital electron populations 1.20988 0.86781 1.05247 1.04679 1.20509 0.99228 0.90114 0.95780 1.21475 0.93027 0.98689 0.97938 1.21715 0.95252 0.96362 0.93414 1.19857 0.92950 0.93476 1.10778 1.18224 0.87222 0.83852 0.76439 1.90829 1.70421 1.32735 1.51303 1.45701 1.07402 1.08402 1.73895 1.21156 0.78939 0.95373 1.02288 1.22418 0.94170 0.94846 0.99425 0.88968 1.21800 0.93585 0.89502 0.93770 1.44671 1.13638 1.19032 1.57842 1.19547 1.00240 0.94342 1.22491 0.89101 1.25672 0.96235 1.02248 1.02029 1.70165 1.05943 1.36435 1.47734 0.85007 0.77802 0.79046 0.77464 1.18448 1.22147 1.22394 1.21622 0.89139 0.92328 0.93439 1.22899 0.93593 0.96397 0.83621 0.90929 1.86389 1.27379 1.96999 1.26899 1.18057 0.89004 0.81829 1.03475 1.91547 1.80482 1.45605 1.93333 1.17608 0.87124 0.83439 1.10235 1.91495 1.79240 1.46178 1.94354 0.88631 0.91193 0.87288 0.79048 0.80816 0.74555 0.91563 0.91180 0.95369 0.91680 0.94490 0.96124 0.97063 0.75768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 9.82 71.24 0.70 -0.01 16 2 C -0.06 -0.65 5.89 -19.78 -0.12 -0.76 16 3 C -0.09 -0.74 9.67 22.23 0.22 -0.52 16 4 C -0.05 -0.59 9.54 22.53 0.21 -0.37 16 5 C -0.17 -3.62 5.88 -20.06 -0.12 -3.74 16 6 C 0.55 15.35 7.77 86.74 0.67 16.02 16 7 O -0.57 -21.16 15.34 -3.93 -0.06 -21.22 16 8 N -0.70 -16.19 5.36 -466.14 -2.50 -18.68 16 9 C 0.15 4.00 5.12 86.38 0.44 4.44 16 10 C -0.09 -2.75 2.83 -9.40 -0.03 -2.78 16 11 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 12 C 0.14 4.91 6.40 86.85 0.56 5.47 16 13 N -0.62 -30.02 3.40 -691.30 -2.35 -32.38 16 14 C -0.24 -12.54 10.28 84.03 0.86 -11.67 16 15 H 0.09 4.48 7.83 -2.91 -0.02 4.45 16 16 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 17 N -0.95 -55.88 10.33 21.65 0.22 -55.65 16 18 Si 0.98 44.02 29.55 68.60 2.03 46.04 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 22 C 0.16 7.56 5.16 86.68 0.45 8.01 16 23 C 0.10 3.36 3.80 31.78 0.12 3.48 16 24 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 25 O -0.57 -18.64 13.39 -148.98 -1.99 -20.63 16 26 C 0.10 2.46 7.29 22.71 0.17 2.63 16 27 F -0.13 -4.26 15.46 44.97 0.70 -3.56 16 28 C 0.04 0.72 7.24 22.38 0.16 0.88 16 29 F -0.13 -2.96 16.37 44.97 0.74 -2.22 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.54 7.62 -2.39 -0.02 0.52 16 32 H 0.11 0.09 8.08 -2.39 -0.02 0.07 16 33 H 0.19 -0.05 8.06 -2.91 -0.02 -0.08 16 34 H 0.17 1.08 6.40 -2.91 -0.02 1.06 16 35 H 0.42 6.95 6.37 -92.71 -0.59 6.36 16 36 H 0.07 1.92 8.10 -2.39 -0.02 1.90 16 37 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.03 1.01 8.00 -2.39 -0.02 0.99 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 41 H 0.02 1.11 7.31 -2.38 -0.02 1.10 16 42 H 0.01 0.59 7.51 -2.39 -0.02 0.58 16 43 H 0.39 9.98 9.12 -74.06 -0.68 9.30 16 Total: -1.00 -78.29 366.02 1.35 -76.93 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -0.19 Total: 13.63 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: 4.77 Total: 17.75 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -4.63 Total: -106.71 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -2.05 Total: -41.85 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 1.43 Total: -5.78 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.29 1.35 -76.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958422477.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.756 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds