Wall clock time and date at job start Sat Apr 11 2020 05:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40366 * 126.65133 * 2 1 4 4 C 1.35123 * 107.11772 * 180.30229 * 3 2 1 5 5 C 1.50703 * 125.61770 * 179.71190 * 4 3 2 6 6 F 1.39903 * 109.46943 * 210.01665 * 5 4 3 7 7 F 1.39897 * 109.46861 * 330.01660 * 5 4 3 8 8 O 1.33932 * 108.76999 * 359.74818 * 4 3 2 9 9 C 1.34921 * 109.38079 * 0.02562 * 8 4 3 10 10 C 1.46656 * 125.98645 * 180.02562 * 9 8 4 11 11 O 1.21694 * 120.00172 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99894 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99772 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.46794 * 180.02562 * 13 12 10 15 15 H 1.09000 * 115.52075 * 29.58019 * 14 13 12 16 16 C 1.53005 * 117.43751 * 244.23808 * 14 13 12 17 17 H 1.09002 * 119.54133 * 4.11706 * 16 14 13 18 18 C 1.54388 * 118.11953 * 160.80919 * 16 14 13 19 19 N 1.48147 * 104.61527 * 87.19121 * 18 16 14 20 20 C 1.36944 * 127.83511 * 140.41382 * 19 18 16 21 21 H 1.07995 * 120.00220 * 359.97438 * 20 19 18 22 22 C 1.38816 * 119.99397 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00462 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99395 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47385 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.46869 * 119.99890 * 24 22 20 27 27 H 1.48507 * 109.46865 * 239.99630 * 24 22 20 28 28 C 1.51827 * 104.55132 * 320.13659 * 19 18 16 29 29 C 1.53001 * 117.43931 * 175.00103 * 14 13 12 30 30 H 1.09002 * 119.53987 * 355.87593 * 29 14 13 31 31 H 1.09005 * 109.46945 * 270.12753 * 1 2 3 32 32 H 1.09007 * 109.47057 * 30.12594 * 1 2 3 33 33 H 1.08997 * 109.47817 * 150.12615 * 1 2 3 34 34 H 1.08000 * 126.43826 * 0.04736 * 3 2 1 35 35 H 1.08995 * 109.47474 * 90.01738 * 5 4 3 36 36 H 0.97003 * 120.00429 * 0.02562 * 12 10 9 37 37 H 1.08993 * 109.47196 * 60.00048 * 13 12 10 38 38 H 1.09001 * 109.46776 * 299.99514 * 13 12 10 39 39 H 1.09005 * 110.40063 * 205.97149 * 18 16 14 40 40 H 1.08991 * 110.41105 * 328.40677 * 18 16 14 41 41 H 0.96998 * 120.00080 * 180.02562 * 23 22 20 42 42 H 1.08997 * 110.21952 * 281.99947 * 28 19 18 43 43 H 1.09001 * 112.25708 * 158.41268 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3449 1.1261 0.0000 4 6 3.6183 0.6744 -0.0068 5 6 4.8550 1.5355 -0.0155 6 9 5.8864 0.8636 -0.6804 7 9 4.5809 2.7384 -0.6750 8 8 3.6005 -0.6649 -0.0054 9 6 2.3219 -1.0956 0.0018 10 6 1.8841 -2.4953 0.0060 11 8 0.6966 -2.7614 0.0120 12 7 2.7969 -3.4868 0.0033 13 6 2.3596 -4.8851 0.0069 14 6 3.5841 -5.8024 0.0034 15 1 4.4747 -5.3987 0.4849 16 6 3.7897 -6.6992 -1.2192 17 1 3.1116 -6.6140 -2.0683 18 6 5.1983 -7.2807 -1.4664 19 7 5.2267 -8.5376 -0.6827 20 6 5.7859 -9.7363 -1.0374 21 1 6.2799 -9.8402 -1.9921 22 6 5.7166 -10.8180 -0.1702 23 7 5.1141 -10.6915 0.9931 24 14 6.4800 -12.4530 -0.6538 25 1 7.0926 -12.3340 -2.0013 26 1 7.5247 -12.8230 0.3346 27 1 5.4289 -13.5017 -0.6792 28 6 4.5022 -8.1988 0.6079 29 6 3.3378 -7.3076 0.1248 30 1 2.3231 -7.6756 0.2767 31 1 -0.3633 0.0023 1.0277 32 1 -0.3633 0.8889 -0.5158 33 1 -0.3634 -0.8910 -0.5118 34 1 2.0307 2.1594 0.0007 35 1 5.1595 1.7445 1.0100 36 1 3.7435 -3.2748 -0.0011 37 1 1.7569 -5.0796 -0.8801 38 1 1.7647 -5.0773 0.8998 39 1 5.3422 -7.4904 -2.5264 40 1 5.9625 -6.5916 -1.1072 41 1 5.0661 -11.4473 1.5992 42 1 5.1593 -7.6383 1.2728 43 1 4.1182 -9.0863 1.1110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978290270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:28 Heat of formation + Delta-G solvation = -57.217910 kcal Electronic energy + Delta-G solvation = -28432.901193 eV Core-core repulsion = 23924.704075 eV Total energy + Delta-G solvation = -4508.197118 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.64340 -47.66489 -43.26996 -39.78282 -38.60980 -35.36148 -34.44193 -33.33059 -32.11639 -30.80189 -28.49367 -27.85281 -27.05934 -26.48410 -24.77236 -22.35286 -21.84624 -21.16139 -20.54321 -19.81470 -19.19435 -18.49955 -18.31944 -17.62653 -17.61622 -16.88321 -16.73489 -16.15764 -15.19660 -15.14271 -14.72474 -14.51608 -14.23496 -14.09296 -13.99481 -13.87278 -13.57054 -13.47139 -13.40006 -13.13680 -13.03963 -12.77516 -12.64107 -12.53541 -11.89224 -11.85935 -11.28179 -10.96708 -10.87263 -10.69070 -10.48232 -10.29732 -10.23693 -10.12002 -9.69906 -9.51664 -9.21345 -9.13686 -8.92476 -8.81403 -6.93834 -5.68117 -3.12254 0.44508 1.64955 1.79600 2.79791 2.84026 3.21693 3.38078 3.43357 3.45940 3.49773 4.06026 4.12961 4.18920 4.24468 4.44745 4.50834 4.79951 4.85196 4.98640 5.17883 5.26133 5.34971 5.38564 5.43143 5.49005 5.49723 5.65990 5.72046 5.82874 5.85976 5.92855 5.94669 6.17741 6.25952 6.29555 6.52947 6.62201 6.69599 6.89908 7.22687 7.30204 7.53226 7.78077 7.81843 8.26415 9.10785 9.75018 10.46078 11.35324 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.002017 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.812540 B =13880.698817 C =15055.776089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.093 4.093 3 C -0.166 4.166 4 C -0.074 4.074 5 C 0.363 3.637 6 F -0.187 7.187 7 F -0.183 7.183 8 O -0.141 6.141 9 C -0.054 4.054 10 C 0.600 3.400 11 O -0.515 6.515 12 N -0.709 5.709 13 C 0.154 3.846 14 C -0.157 4.157 15 H 0.103 0.897 16 C -0.171 4.171 17 H 0.103 0.897 18 C 0.158 3.842 19 N -0.602 5.602 20 C -0.214 4.214 21 H 0.080 0.920 22 C -0.015 4.015 23 N -0.923 5.923 24 Si 0.917 3.083 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.290 1.290 28 C 0.154 3.846 29 C -0.152 4.152 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.024 0.976 41 H 0.253 0.747 42 H 0.015 0.985 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.581 27.052 0.518 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 C -0.186 4.186 4 C -0.127 4.127 5 C 0.309 3.691 6 F -0.168 7.168 7 F -0.164 7.164 8 O -0.036 6.036 9 C -0.107 4.107 10 C 0.385 3.615 11 O -0.393 6.393 12 N -0.359 5.359 13 C 0.031 3.969 14 C -0.177 4.177 15 H 0.121 0.879 16 C -0.191 4.191 17 H 0.121 0.879 18 C 0.032 3.968 19 N -0.327 5.327 20 C -0.342 4.342 21 H 0.098 0.902 22 C -0.210 4.210 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.217 1.217 28 C 0.030 3.970 29 C -0.172 4.172 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.066 26.334 0.524 27.029 hybrid contribution 0.831 -0.407 -0.405 1.010 sum -5.235 25.927 0.119 26.450 Atomic orbital electron populations 1.20458 0.87441 1.03995 1.03250 1.20665 0.98090 0.90362 1.00454 1.21514 0.90597 1.00882 1.05586 1.23043 0.97187 0.82435 1.10067 1.19593 0.79580 0.75945 0.93999 1.93087 1.59772 1.80507 1.83424 1.93069 1.93989 1.45385 1.83920 1.84028 1.28751 1.20314 1.70552 1.22219 0.80802 0.95336 1.12321 1.16452 0.85909 0.81526 0.77632 1.90873 1.15540 1.82029 1.50818 1.46005 1.10057 1.06556 1.73279 1.21010 0.95819 0.77486 1.02568 1.22578 0.98366 0.92943 1.03771 0.87948 1.24014 1.00800 1.02853 0.91431 0.87904 1.21101 0.91465 0.88543 0.95727 1.46169 1.65028 1.06279 1.15200 1.19166 1.27847 0.86033 1.01172 0.90240 1.24760 1.01447 0.98334 0.96454 1.69492 1.48424 1.29908 1.09382 0.85947 0.78311 0.83432 0.77509 1.20545 1.21744 1.21732 1.22577 0.88464 0.98016 0.87972 1.24194 1.01854 0.90578 1.00594 0.87876 0.90442 0.91175 0.89145 0.81703 0.84005 0.75731 0.90897 0.90548 0.93173 0.95883 0.93626 0.96682 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 9.81 36.00 0.35 -0.45 16 2 C -0.09 -0.92 6.20 -104.44 -0.65 -1.57 16 3 C -0.17 -1.33 10.38 -39.89 -0.41 -1.74 16 4 C -0.07 -0.63 6.93 -35.42 -0.25 -0.87 16 5 C 0.36 2.20 5.82 36.01 0.21 2.41 16 6 F -0.19 -1.63 17.31 2.25 0.04 -1.59 16 7 F -0.18 -1.26 17.02 2.25 0.04 -1.22 16 8 O -0.14 -1.48 10.38 4.97 0.05 -1.43 16 9 C -0.05 -0.61 7.13 -36.80 -0.26 -0.88 16 10 C 0.60 7.70 7.79 -12.86 -0.10 7.60 16 11 O -0.51 -7.72 14.74 5.19 0.08 -7.65 16 12 N -0.71 -8.48 5.55 -61.62 -0.34 -8.82 16 13 C 0.15 2.02 5.95 -4.04 -0.02 2.00 16 14 C -0.16 -2.38 5.38 -90.61 -0.49 -2.87 16 15 H 0.10 1.54 8.04 -51.93 -0.42 1.12 16 16 C -0.17 -3.01 6.74 -89.22 -0.60 -3.61 16 17 H 0.10 1.69 8.12 -51.93 -0.42 1.27 16 18 C 0.16 3.27 7.05 -2.41 -0.02 3.26 16 19 N -0.60 -15.35 3.46 -165.70 -0.57 -15.92 16 20 C -0.21 -5.93 10.42 -15.05 -0.16 -6.09 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 22 C -0.02 -0.42 5.50 -17.43 -0.10 -0.52 16 23 N -0.92 -26.55 10.12 55.49 0.56 -25.99 16 24 Si 0.92 21.92 29.55 -169.99 -5.02 16.90 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 C 0.15 3.64 6.43 -0.29 0.00 3.64 16 29 C -0.15 -2.86 6.76 -89.22 -0.60 -3.46 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.93 6.45 -51.93 -0.34 0.60 16 34 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.41 4.30 8.16 -40.82 -0.33 3.97 16 37 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 38 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.14 3.61 5.34 -51.93 -0.28 3.33 16 LS Contribution 371.12 15.07 5.59 5.59 Total: -1.00 -31.91 371.12 -8.22 -40.14 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.55 Total: 3.14 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -3.09 Total: -3.15 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.35 Total: -50.72 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: 0.13 Total: -9.07 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.91 -8.22 -40.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978290270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.082 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds