Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38222 * 119.84323 * 2 1 4 4 C 1.38273 * 120.14488 * 180.02562 * 3 2 1 5 5 F 1.35100 * 120.08374 * 179.97438 * 4 3 2 6 6 C 1.39836 * 119.83307 * 359.97438 * 4 3 2 7 7 C 1.47700 * 120.15789 * 179.97438 * 6 4 3 8 8 O 1.21574 * 119.99786 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00434 * 180.02562 * 7 6 4 10 10 C 1.46494 * 120.00525 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51140 * 60.10415 * 11 10 9 13 13 C 1.53717 * 109.44245 * 180.38673 * 11 10 9 14 14 N 1.47154 * 108.16009 * 172.37554 * 13 11 10 15 15 C 1.36931 * 120.97887 * 129.43492 * 14 13 11 16 16 H 1.08005 * 120.00440 * 333.49504 * 15 14 13 17 17 C 1.38821 * 119.99883 * 153.49763 * 15 14 13 18 18 N 1.31619 * 119.99631 * 343.07823 * 17 15 14 19 19 Si 1.86796 * 119.99899 * 162.80446 * 17 15 14 20 20 H 1.48494 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47337 * 119.99994 * 19 17 15 22 22 H 1.48503 * 109.46949 * 240.00023 * 19 17 15 23 23 C 1.47149 * 118.03579 * 309.15864 * 14 13 11 24 24 C 1.53296 * 108.38694 * 50.78628 * 23 14 13 25 25 O 1.42963 * 109.22250 * 307.69880 * 24 23 14 26 26 C 1.39615 * 119.68940 * 0.26020 * 6 4 3 27 27 C 1.38112 * 119.85241 * 359.46627 * 26 6 4 28 28 F 1.35099 * 119.91769 * 180.25545 * 27 26 6 29 29 H 1.09005 * 109.47061 * 89.99979 * 1 2 3 30 30 H 1.08995 * 109.47270 * 209.99938 * 1 2 3 31 31 H 1.08997 * 109.46846 * 329.99934 * 1 2 3 32 32 H 1.08003 * 119.92876 * 0.02562 * 3 2 1 33 33 H 0.97008 * 119.99748 * 359.97438 * 9 7 6 34 34 H 1.09007 * 109.46800 * 59.99495 * 10 9 7 35 35 H 1.08997 * 109.46982 * 300.00091 * 10 9 7 36 36 H 1.08999 * 109.83737 * 52.69713 * 13 11 10 37 37 H 1.09001 * 109.74797 * 292.00152 * 13 11 10 38 38 H 0.97003 * 119.99304 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.68413 * 170.50997 * 23 14 13 40 40 H 1.08997 * 109.68203 * 291.02940 * 23 14 13 41 41 H 1.09004 * 109.50741 * 67.61742 * 24 23 14 42 42 H 1.08993 * 109.51437 * 187.72356 * 24 23 14 43 43 H 1.08005 * 120.07384 * 179.71926 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1989 0.0000 4 6 3.5776 1.2062 -0.0005 5 9 4.2486 2.3788 -0.0011 6 6 4.2796 -0.0032 -0.0005 7 6 5.7566 -0.0038 -0.0017 8 8 6.3648 1.0489 -0.0031 9 7 6.4301 -1.1712 -0.0022 10 6 7.8950 -1.1718 -0.0039 11 6 8.4045 -2.6144 -0.0035 12 1 8.0418 -3.1288 -0.8934 13 6 9.9416 -2.6142 0.0045 14 7 10.3995 -4.0004 0.1902 15 6 11.3322 -4.5526 -0.6465 16 1 11.4335 -4.1880 -1.6581 17 6 12.1474 -5.5814 -0.1946 18 7 12.2697 -5.8052 1.0966 19 14 13.0648 -6.6526 -1.4193 20 1 12.7551 -6.2025 -2.8001 21 1 14.5258 -6.5408 -1.1778 22 1 12.6425 -8.0667 -1.2538 23 6 9.8300 -4.7733 1.3054 24 6 8.3023 -4.6666 1.2373 25 8 7.9295 -3.2883 1.1645 26 6 3.5778 -1.2101 -0.0055 27 6 2.1967 -1.2024 0.0008 28 9 1.5164 -2.3695 0.0012 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6511 2.1321 0.0004 33 1 5.9447 -2.0111 -0.0014 34 1 8.2595 -0.6578 0.8856 35 1 8.2575 -0.6583 -0.8944 36 1 10.3072 -1.9941 0.8230 37 1 10.3148 -2.2284 -0.9442 38 1 12.8391 -6.5243 1.4123 39 1 10.1292 -5.8178 1.2186 40 1 10.1850 -4.3672 2.2525 41 1 7.9400 -5.1889 0.3518 42 1 7.8658 -5.1159 2.1292 43 1 4.1138 -2.1478 -0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035410860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -120.046037 kcal Electronic energy + Delta-G solvation = -29105.960370 eV Core-core repulsion = 24595.038820 eV Total energy + Delta-G solvation = -4510.921550 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.35345 -49.15279 -40.28361 -38.90711 -38.30571 -35.03585 -34.36677 -33.55835 -31.58595 -30.81251 -30.54402 -28.39794 -27.36410 -25.48042 -23.69662 -23.27641 -22.83885 -21.78394 -20.82593 -19.77003 -18.55126 -17.77631 -17.50787 -16.94218 -16.43895 -16.30757 -16.09137 -15.73004 -15.62205 -15.04786 -14.93877 -14.78788 -14.64645 -14.40292 -14.05629 -13.84533 -13.74414 -13.64780 -13.26560 -13.12015 -13.01645 -12.78369 -12.49836 -12.47916 -11.90464 -11.88788 -11.60107 -11.17021 -10.90990 -10.75124 -10.46253 -10.29543 -10.13137 -10.02176 -9.70713 -9.63599 -9.15057 -9.11200 -8.92099 -8.58910 -6.80467 -5.88749 -3.32598 0.11392 0.49302 2.37679 2.93731 3.22608 3.30868 3.39065 3.41121 3.62472 3.66804 3.97762 4.09183 4.17275 4.38947 4.45254 4.58835 4.87500 4.97438 5.03732 5.09434 5.22547 5.28633 5.39224 5.41629 5.42994 5.47655 5.55596 5.61781 5.73021 5.79004 5.97331 6.09327 6.21478 6.23589 6.31636 6.39743 6.43707 6.70368 7.05113 7.37603 7.47119 7.66927 7.78779 8.05997 8.28757 9.06830 9.69417 10.26110 11.19345 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002275 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.563896 B =12306.383643 C =13114.808831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.156 3.844 5 F -0.109 7.109 6 C -0.146 4.146 7 C 0.555 3.445 8 O -0.524 6.524 9 N -0.710 5.710 10 C 0.130 3.870 11 C 0.064 3.936 12 H 0.060 0.940 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.256 4.256 16 H 0.070 0.930 17 C 0.002 3.998 18 N -0.902 5.902 19 Si 0.905 3.095 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.288 1.288 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.391 6.391 26 C -0.087 4.087 27 C 0.080 3.920 28 F -0.129 7.129 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.153 0.847 33 H 0.403 0.597 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.255 0.745 39 H 0.095 0.905 40 H 0.029 0.971 41 H 0.041 0.959 42 H 0.082 0.918 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.229 9.856 -1.955 26.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.068 4.068 3 C -0.159 4.159 4 C 0.135 3.865 5 F -0.087 7.087 6 C -0.151 4.151 7 C 0.341 3.659 8 O -0.401 6.401 9 N -0.362 5.362 10 C 0.007 3.993 11 C 0.004 3.996 12 H 0.078 0.922 13 C -0.006 4.006 14 N -0.318 5.318 15 C -0.385 4.385 16 H 0.087 0.913 17 C -0.197 4.197 18 N -0.546 5.546 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.216 1.216 22 H -0.215 1.215 23 C 0.013 3.987 24 C -0.038 4.038 25 O -0.310 6.310 26 C -0.106 4.106 27 C 0.061 3.939 28 F -0.108 7.108 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.170 0.830 33 H 0.239 0.761 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.728 10.555 -1.746 26.028 hybrid contribution 0.568 -1.296 -0.642 1.554 sum -23.160 9.259 -2.388 25.056 Atomic orbital electron populations 1.20846 0.88971 1.04166 1.03602 1.19948 0.97662 0.90936 0.98224 1.20891 0.91657 0.99180 1.04157 1.17631 0.89557 0.81047 0.98263 1.91627 1.80299 1.44117 1.92613 1.19927 0.94531 0.92347 1.08246 1.17824 0.85995 0.84457 0.77671 1.90860 1.69218 1.30811 1.49228 1.45822 1.08109 1.08099 1.74163 1.21513 0.78115 0.96418 1.03263 1.22913 0.97205 0.90740 0.88759 0.92211 1.21526 0.90255 0.88762 1.00012 1.44097 1.46689 1.07138 1.33846 1.19240 1.11028 1.15781 0.92431 0.91252 1.25069 0.97525 1.01380 0.95719 1.70044 1.40504 1.32268 1.11818 0.86175 0.79272 0.80379 0.80666 1.20192 1.21601 1.21469 1.21445 0.87607 0.99321 0.90297 1.23331 0.99117 0.81145 1.00202 1.87774 1.76085 1.24322 1.42814 1.21223 0.92511 0.98561 0.98340 1.17274 0.89447 0.81489 1.05731 1.91532 1.79692 1.45566 1.93963 0.89870 0.90376 0.90245 0.82957 0.76149 0.90332 0.89786 0.95107 0.91681 0.93511 0.88738 0.95337 0.94056 0.89981 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.82 36.01 0.35 -0.18 16 2 C -0.07 -0.47 5.89 -104.49 -0.62 -1.09 16 3 C -0.14 -1.06 9.66 -39.57 -0.38 -1.44 16 4 C 0.16 1.68 7.28 -38.97 -0.28 1.40 16 5 F -0.11 -1.42 15.55 2.25 0.04 -1.39 16 6 C -0.15 -1.65 5.88 -104.92 -0.62 -2.27 16 7 C 0.55 7.81 7.77 -12.40 -0.10 7.71 16 8 O -0.52 -9.22 15.34 5.30 0.08 -9.14 16 9 N -0.71 -9.24 5.40 -61.30 -0.33 -9.57 16 10 C 0.13 1.91 5.37 -4.05 -0.02 1.89 16 11 C 0.06 1.07 2.88 -26.36 -0.08 0.99 16 12 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 13 C 0.12 2.47 6.05 -3.31 -0.02 2.45 16 14 N -0.59 -14.56 3.04 -171.57 -0.52 -15.09 16 15 C -0.26 -6.84 9.65 -15.06 -0.15 -6.98 16 16 H 0.07 1.81 7.89 -52.48 -0.41 1.40 16 17 C 0.00 0.05 4.95 -17.43 -0.09 -0.04 16 18 N -0.90 -25.66 11.14 55.49 0.62 -25.05 16 19 Si 0.91 21.19 29.59 -169.99 -5.03 16.16 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.14 3.24 5.44 -3.53 -0.02 3.22 16 24 C 0.04 0.74 6.99 37.31 0.26 1.00 16 25 O -0.39 -7.01 10.13 -35.23 -0.36 -7.36 16 26 C -0.09 -0.79 9.52 -39.11 -0.37 -1.16 16 27 C 0.08 0.68 7.23 -39.49 -0.29 0.40 16 28 F -0.13 -1.15 16.45 2.25 0.04 -1.11 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.36 7.62 -51.93 -0.40 -0.04 16 31 H 0.08 0.24 8.08 -51.93 -0.42 -0.18 16 32 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.40 4.46 6.38 -40.82 -0.26 4.20 16 34 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 35 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.25 7.96 -51.93 -0.41 0.84 16 38 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.09 2.42 6.14 -51.93 -0.32 2.10 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.15 1.14 6.40 -52.48 -0.34 0.80 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -32.12 364.30 -7.88 -40.00 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -5.50 Total: 1.16 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: -2.41 Total: 5.89 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -0.23 Total: -49.70 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.28 Total: -16.50 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.07 Total: -2.50 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.12 -7.88 -40.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035410860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.046 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds