Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38222 * 119.84323 * 2 1 4 4 C 1.38273 * 120.14488 * 180.02562 * 3 2 1 5 5 F 1.35100 * 120.08374 * 179.97438 * 4 3 2 6 6 C 1.39836 * 119.83307 * 359.97438 * 4 3 2 7 7 C 1.47700 * 120.15789 * 179.97438 * 6 4 3 8 8 O 1.21574 * 119.99786 * 359.97438 * 7 6 4 9 9 N 1.34773 * 120.00434 * 180.02562 * 7 6 4 10 10 C 1.46494 * 120.00525 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47407 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51140 * 60.10415 * 11 10 9 13 13 C 1.53717 * 109.44245 * 180.38673 * 11 10 9 14 14 N 1.47154 * 108.16009 * 172.37554 * 13 11 10 15 15 C 1.36931 * 120.97887 * 129.43492 * 14 13 11 16 16 H 1.08005 * 120.00440 * 333.49504 * 15 14 13 17 17 C 1.38821 * 119.99883 * 153.49763 * 15 14 13 18 18 N 1.31619 * 119.99631 * 343.07823 * 17 15 14 19 19 Si 1.86796 * 119.99899 * 162.80446 * 17 15 14 20 20 H 1.48494 * 109.47313 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47337 * 119.99994 * 19 17 15 22 22 H 1.48503 * 109.46949 * 240.00023 * 19 17 15 23 23 C 1.47149 * 118.03579 * 309.15864 * 14 13 11 24 24 C 1.53296 * 108.38694 * 50.78628 * 23 14 13 25 25 O 1.42963 * 109.22250 * 307.69880 * 24 23 14 26 26 C 1.39615 * 119.68940 * 0.26020 * 6 4 3 27 27 C 1.38112 * 119.85241 * 359.46627 * 26 6 4 28 28 F 1.35099 * 119.91769 * 180.25545 * 27 26 6 29 29 H 1.09005 * 109.47061 * 89.99979 * 1 2 3 30 30 H 1.08995 * 109.47270 * 209.99938 * 1 2 3 31 31 H 1.08997 * 109.46846 * 329.99934 * 1 2 3 32 32 H 1.08003 * 119.92876 * 0.02562 * 3 2 1 33 33 H 0.97008 * 119.99748 * 359.97438 * 9 7 6 34 34 H 1.09007 * 109.46800 * 59.99495 * 10 9 7 35 35 H 1.08997 * 109.46982 * 300.00091 * 10 9 7 36 36 H 1.08999 * 109.83737 * 52.69713 * 13 11 10 37 37 H 1.09001 * 109.74797 * 292.00152 * 13 11 10 38 38 H 0.97003 * 119.99304 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.68413 * 170.50997 * 23 14 13 40 40 H 1.08997 * 109.68203 * 291.02940 * 23 14 13 41 41 H 1.09004 * 109.50741 * 67.61742 * 24 23 14 42 42 H 1.08993 * 109.51437 * 187.72356 * 24 23 14 43 43 H 1.08005 * 120.07384 * 179.71926 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1989 0.0000 4 6 3.5776 1.2062 -0.0005 5 9 4.2486 2.3788 -0.0011 6 6 4.2796 -0.0032 -0.0005 7 6 5.7566 -0.0038 -0.0017 8 8 6.3648 1.0489 -0.0031 9 7 6.4301 -1.1712 -0.0022 10 6 7.8950 -1.1718 -0.0039 11 6 8.4045 -2.6144 -0.0035 12 1 8.0418 -3.1288 -0.8934 13 6 9.9416 -2.6142 0.0045 14 7 10.3995 -4.0004 0.1902 15 6 11.3322 -4.5526 -0.6465 16 1 11.4335 -4.1880 -1.6581 17 6 12.1474 -5.5814 -0.1946 18 7 12.2697 -5.8052 1.0966 19 14 13.0648 -6.6526 -1.4193 20 1 12.7551 -6.2025 -2.8001 21 1 14.5258 -6.5408 -1.1778 22 1 12.6425 -8.0667 -1.2538 23 6 9.8300 -4.7733 1.3054 24 6 8.3023 -4.6666 1.2373 25 8 7.9295 -3.2883 1.1645 26 6 3.5778 -1.2101 -0.0055 27 6 2.1967 -1.2024 0.0008 28 9 1.5164 -2.3695 0.0012 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6511 2.1321 0.0004 33 1 5.9447 -2.0111 -0.0014 34 1 8.2595 -0.6578 0.8856 35 1 8.2575 -0.6583 -0.8944 36 1 10.3072 -1.9941 0.8230 37 1 10.3148 -2.2284 -0.9442 38 1 12.8391 -6.5243 1.4123 39 1 10.1292 -5.8178 1.2186 40 1 10.1850 -4.3672 2.2525 41 1 7.9400 -5.1889 0.3518 42 1 7.8658 -5.1159 2.1292 43 1 4.1138 -2.1478 -0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035410860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -140.571627 kcal Electronic energy + Delta-G solvation = -29106.850426 eV Core-core repulsion = 24595.038820 eV Total energy + Delta-G solvation = -4511.811606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.02531 -50.01835 -41.28804 -40.16050 -39.40095 -36.56812 -35.87959 -34.28397 -33.33585 -32.29405 -31.31817 -29.50676 -28.67057 -26.98049 -25.00731 -24.35740 -23.93201 -23.02829 -21.89947 -21.32472 -19.51525 -18.87090 -18.51296 -18.26526 -17.56016 -17.24447 -17.15599 -16.99469 -16.65869 -16.48145 -16.18150 -15.88652 -15.72929 -15.52572 -15.39144 -15.13214 -15.00832 -14.60288 -14.31894 -14.23129 -14.16577 -13.79964 -13.76446 -13.23201 -13.03160 -12.92167 -12.72838 -12.62724 -12.55987 -12.49622 -12.18002 -12.06994 -11.89435 -11.39964 -11.17074 -10.82151 -10.56456 -10.37485 -10.15838 -9.67341 -8.77246 -7.92721 -5.40192 -0.62631 -0.18036 1.45322 1.47385 1.52294 1.57953 1.89299 2.36004 2.46803 2.74295 2.93610 2.96636 3.22551 3.32728 3.46039 3.47834 3.69132 3.91833 3.94609 4.03689 4.21951 4.35189 4.44668 4.46137 4.49803 4.56738 4.60252 4.69816 4.71869 4.76297 4.80007 4.85032 4.88851 5.03883 5.08793 5.16241 5.21686 5.24318 5.54674 5.58830 5.60534 6.23216 6.30805 6.34772 7.00641 7.04827 7.72713 8.26228 9.13391 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020529 B = 0.002275 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.563896 B =12306.383643 C =13114.808831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.053 4.053 3 C -0.128 4.128 4 C 0.135 3.865 5 F -0.128 7.128 6 C -0.165 4.165 7 C 0.555 3.445 8 O -0.567 6.567 9 N -0.702 5.702 10 C 0.140 3.860 11 C 0.079 3.921 12 H 0.073 0.927 13 C 0.116 3.884 14 N -0.613 5.613 15 C -0.265 4.265 16 H 0.073 0.927 17 C -0.051 4.051 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.287 1.287 23 C 0.142 3.858 24 C 0.054 3.946 25 O -0.389 6.389 26 C -0.082 4.082 27 C 0.074 3.926 28 F -0.130 7.130 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.182 0.818 33 H 0.414 0.586 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.018 0.982 37 H 0.073 0.927 38 H 0.252 0.748 39 H 0.068 0.932 40 H -0.002 1.002 41 H 0.053 0.947 42 H 0.110 0.890 43 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.176 9.783 -3.050 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.146 4.146 4 C 0.115 3.885 5 F -0.107 7.107 6 C -0.169 4.169 7 C 0.342 3.658 8 O -0.447 6.447 9 N -0.354 5.354 10 C 0.016 3.984 11 C 0.019 3.981 12 H 0.091 0.909 13 C -0.010 4.010 14 N -0.337 5.337 15 C -0.394 4.394 16 H 0.091 0.909 17 C -0.247 4.247 18 N -0.582 5.582 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.221 1.221 22 H -0.214 1.214 23 C 0.016 3.984 24 C -0.023 4.023 25 O -0.309 6.309 26 C -0.101 4.101 27 C 0.055 3.945 28 F -0.109 7.109 29 H 0.115 0.885 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.199 0.801 33 H 0.252 0.748 34 H 0.083 0.917 35 H 0.111 0.889 36 H 0.036 0.964 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.086 0.914 40 H 0.016 0.984 41 H 0.071 0.929 42 H 0.128 0.872 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -26.717 10.477 -2.851 28.839 hybrid contribution 1.417 -1.231 -0.283 1.899 sum -25.299 9.246 -3.135 27.118 Atomic orbital electron populations 1.20982 0.86658 1.05276 1.04779 1.20298 0.99202 0.90083 0.95825 1.21152 0.90212 1.00633 1.02616 1.18009 0.90813 0.80254 0.99462 1.91574 1.80959 1.45153 1.92982 1.19705 0.92773 0.93537 1.10925 1.18224 0.87218 0.83798 0.76518 1.90832 1.70351 1.32208 1.51357 1.45675 1.07317 1.08598 1.73769 1.21288 0.79279 0.94711 1.03132 1.22740 0.94482 0.91941 0.88901 0.90914 1.21687 0.92835 0.86603 0.99899 1.44378 1.46769 1.08878 1.33705 1.19586 1.11115 1.15784 0.92962 0.90894 1.25849 0.98815 1.02768 0.97250 1.70199 1.41582 1.32834 1.13578 0.85148 0.77447 0.78430 0.79048 1.18903 1.22115 1.21402 1.21322 0.90983 0.97364 0.88685 1.23163 0.95284 0.81733 1.02131 1.87792 1.75576 1.24085 1.43417 1.21272 0.92971 0.98191 0.97660 1.17389 0.89300 0.81967 1.05859 1.91535 1.79596 1.45735 1.93984 0.88458 0.90270 0.88213 0.80086 0.74835 0.91697 0.88901 0.96422 0.90840 0.93934 0.91410 0.98407 0.92854 0.87250 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.82 71.24 0.70 0.07 16 2 C -0.05 -0.59 5.89 -19.78 -0.12 -0.71 16 3 C -0.13 -1.61 9.66 22.27 0.22 -1.39 16 4 C 0.14 2.80 7.28 22.67 0.17 2.96 16 5 F -0.13 -3.39 15.55 44.97 0.70 -2.69 16 6 C -0.17 -3.59 5.88 -20.06 -0.12 -3.71 16 7 C 0.55 15.49 7.77 86.74 0.67 16.16 16 8 O -0.57 -20.36 15.34 -3.95 -0.06 -20.42 16 9 N -0.70 -17.52 5.40 -466.12 -2.52 -20.04 16 10 C 0.14 4.01 5.37 86.38 0.46 4.47 16 11 C 0.08 2.56 2.88 30.84 0.09 2.64 16 12 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 13 C 0.12 4.72 6.05 86.50 0.52 5.25 16 14 N -0.61 -30.34 3.04 -696.72 -2.12 -32.46 16 15 C -0.26 -14.23 9.65 84.04 0.81 -13.42 16 16 H 0.07 3.79 7.89 -2.91 -0.02 3.76 16 17 C -0.05 -2.82 4.95 84.86 0.42 -2.40 16 18 N -0.94 -54.64 11.14 21.65 0.24 -54.40 16 19 Si 0.97 43.88 29.59 68.60 2.03 45.91 16 20 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 23 C 0.14 6.73 5.44 86.35 0.47 7.20 16 24 C 0.05 1.94 6.99 72.08 0.50 2.44 16 25 O -0.39 -13.38 10.13 -148.98 -1.51 -14.89 16 26 C -0.08 -1.33 9.52 22.57 0.21 -1.12 16 27 C 0.07 1.08 7.23 22.33 0.16 1.24 16 28 F -0.13 -1.98 16.45 44.97 0.74 -1.24 16 29 H 0.10 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.08 0.45 7.62 -2.39 -0.02 0.43 16 31 H 0.10 0.16 8.08 -2.39 -0.02 0.15 16 32 H 0.18 1.17 8.06 -2.91 -0.02 1.15 16 33 H 0.41 8.39 6.38 -92.70 -0.59 7.80 16 34 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 2.81 7.96 -2.39 -0.02 2.80 16 38 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 39 H 0.07 3.56 6.14 -2.39 -0.01 3.55 16 40 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.11 3.31 8.14 -2.39 -0.02 3.29 16 43 H 0.16 2.12 6.40 -2.91 -0.02 2.10 16 Total: -1.00 -71.25 364.30 3.15 -68.11 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.47 Total: 12.42 kcal Atomic # 6 Polarization: 14.51 SS G_CDS: 5.18 Total: 19.69 kcal Atomic # 7 Polarization: -102.50 SS G_CDS: -4.40 Total: -106.89 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.57 Total: -35.30 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 1.44 Total: -3.93 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.25 3.15 -68.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035410860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.464 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds