Wall clock time and date at job start Sat Apr 11 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38307 * 119.80500 * 2 1 4 4 C 1.38220 * 120.18810 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.09770 * 179.97438 * 4 3 2 6 6 C 1.39901 * 119.80654 * 0.02562 * 4 3 2 7 7 C 1.47548 * 120.18835 * 179.97438 * 6 4 3 8 8 O 1.21586 * 119.99782 * 89.99724 * 7 6 4 9 9 N 1.34772 * 119.99802 * 270.27676 * 7 6 4 10 10 C 1.46507 * 119.99694 * 179.72473 * 9 7 6 11 11 C 1.52999 * 109.46777 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51590 * 305.09752 * 11 10 9 13 13 C 1.53297 * 109.51043 * 184.99905 * 11 10 9 14 14 N 1.47155 * 108.38665 * 187.77369 * 13 11 10 15 15 C 1.36930 * 120.98242 * 230.55526 * 14 13 11 16 16 H 1.08002 * 120.00029 * 26.24234 * 15 14 13 17 17 C 1.38813 * 120.00108 * 206.24121 * 15 14 13 18 18 N 1.31623 * 119.99652 * 16.90594 * 17 15 14 19 19 Si 1.86796 * 120.00138 * 196.90927 * 17 15 14 20 20 H 1.48504 * 109.47123 * 59.99927 * 19 17 15 21 21 H 1.48499 * 109.47047 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47179 * 300.00104 * 19 17 15 23 23 C 1.47150 * 118.02991 * 50.53656 * 14 13 11 24 24 C 1.53293 * 108.38855 * 309.46045 * 23 14 13 25 25 O 1.42964 * 109.51266 * 65.25715 * 11 10 9 26 26 C 1.39900 * 119.62147 * 0.25311 * 6 4 3 27 27 F 1.35101 * 120.09428 * 179.72430 * 26 6 4 28 28 C 1.38218 * 119.81039 * 359.45175 * 26 6 4 29 29 H 1.09001 * 109.46580 * 90.00366 * 1 2 3 30 30 H 1.08998 * 109.46929 * 210.00224 * 1 2 3 31 31 H 1.08994 * 109.47134 * 330.00381 * 1 2 3 32 32 H 1.08004 * 119.90459 * 359.97438 * 3 2 1 33 33 H 0.96999 * 120.00606 * 359.72503 * 9 7 6 34 34 H 1.08998 * 109.46934 * 299.99748 * 10 9 7 35 35 H 1.08995 * 109.46961 * 59.99614 * 10 9 7 36 36 H 1.09008 * 109.68207 * 307.49826 * 13 11 10 37 37 H 1.08996 * 109.68227 * 68.01267 * 13 11 10 38 38 H 0.96999 * 119.99472 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.68674 * 69.19241 * 23 14 13 40 40 H 1.09012 * 109.67664 * 189.70515 * 23 14 13 41 41 H 1.08998 * 109.51273 * 172.22970 * 24 23 14 42 42 H 1.08995 * 109.51430 * 292.38404 * 24 23 14 43 43 H 1.07994 * 119.91036 * 180.32117 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5767 1.2094 0.0005 5 9 4.2463 2.3827 0.0000 6 6 4.2802 0.0001 0.0005 7 6 5.7557 0.0001 0.0005 8 8 6.3636 0.0002 1.0535 9 7 6.4295 0.0058 -1.1666 10 6 7.8945 0.0119 -1.1666 11 6 8.4045 0.0169 -2.6091 12 1 7.9724 -0.8244 -3.1509 13 6 9.9328 -0.1026 -2.6123 14 7 10.4108 0.0924 -3.9903 15 6 11.2728 -0.7995 -4.5703 16 1 11.2906 -1.8271 -4.2383 17 6 12.1236 -0.3830 -5.5849 18 7 12.3511 0.9005 -5.7676 19 14 12.9457 -1.6440 -6.6909 20 1 11.9064 -2.4358 -7.3967 21 1 13.7983 -0.9474 -7.6874 22 1 13.7855 -2.5514 -5.8683 23 6 9.9346 1.2741 -4.7266 24 6 8.4063 1.3266 -4.6206 25 8 8.0268 1.2404 -3.2449 26 6 3.5767 -1.2091 -0.0054 27 9 4.2464 -2.3825 -0.0111 28 6 2.1946 -1.2001 0.0003 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6498 2.1327 -0.0004 33 1 5.9446 0.0058 -2.0067 34 1 8.2541 0.9022 -0.6506 35 1 8.2615 -0.8777 -0.6549 36 1 10.3621 0.6608 -1.9633 37 1 10.2244 -1.0914 -2.2585 38 1 12.9459 1.1914 -6.4763 39 1 10.3641 2.1761 -4.2906 40 1 10.2280 1.1970 -5.7737 41 1 8.0442 2.2652 -5.0400 42 1 7.9742 0.4906 -5.1705 43 1 1.6499 -2.1326 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035438030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:46 Heat of formation + Delta-G solvation = -121.847437 kcal Electronic energy + Delta-G solvation = -29329.445422 eV Core-core repulsion = 24818.445757 eV Total energy + Delta-G solvation = -4510.999665 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -49.40887 -49.36471 -40.13869 -39.03416 -38.35539 -34.96917 -34.31518 -33.31286 -31.56219 -30.88510 -30.69563 -28.47828 -27.35472 -25.45515 -23.39899 -23.28128 -22.96955 -21.81709 -20.88311 -19.72459 -18.33532 -17.85783 -17.77196 -16.93941 -16.60310 -16.17027 -16.02767 -15.85911 -15.66138 -15.53036 -14.99420 -14.65183 -14.53311 -14.34451 -14.08566 -14.05598 -13.77902 -13.63716 -13.26136 -13.09617 -12.76516 -12.53617 -12.48316 -12.30790 -12.16178 -11.97405 -11.59071 -11.14053 -10.86428 -10.75924 -10.43752 -10.31383 -10.20820 -9.99265 -9.68855 -9.31964 -9.25406 -9.11013 -9.08107 -8.56235 -6.78160 -5.86430 -3.30193 0.29952 0.49571 2.34370 2.72342 3.02414 3.32950 3.33960 3.39711 3.40624 3.84027 4.03605 4.18660 4.35698 4.40160 4.43890 4.56133 4.84597 5.02783 5.04595 5.08955 5.28209 5.30010 5.31981 5.44995 5.47359 5.49314 5.50990 5.76300 5.76471 5.81168 5.99387 6.11898 6.21436 6.24232 6.34470 6.41328 6.46177 6.72914 7.07736 7.37078 7.49428 7.68293 7.82608 8.03019 8.31049 9.09022 9.71627 10.28512 11.21755 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002350 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.192991 B =11911.653083 C =12193.957759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.014 4.014 3 C -0.168 4.168 4 C 0.171 3.829 5 F -0.118 7.118 6 C -0.203 4.203 7 C 0.564 3.436 8 O -0.524 6.524 9 N -0.704 5.704 10 C 0.129 3.871 11 C 0.065 3.935 12 H 0.060 0.940 13 C 0.122 3.878 14 N -0.594 5.594 15 C -0.257 4.257 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.907 3.093 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.139 3.861 24 C 0.040 3.960 25 O -0.389 6.389 26 C 0.169 3.831 27 F -0.120 7.120 28 C -0.169 4.169 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.405 0.595 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.256 0.744 39 H 0.029 0.971 40 H 0.095 0.905 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.638 -1.259 9.288 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.014 4.014 3 C -0.187 4.187 4 C 0.151 3.849 5 F -0.096 7.096 6 C -0.208 4.208 7 C 0.347 3.653 8 O -0.400 6.400 9 N -0.354 5.354 10 C 0.005 3.995 11 C 0.005 3.995 12 H 0.078 0.922 13 C -0.005 4.005 14 N -0.317 5.317 15 C -0.386 4.386 16 H 0.086 0.914 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.208 1.208 23 C 0.014 3.986 24 C -0.038 4.038 25 O -0.309 6.309 26 C 0.148 3.852 27 F -0.098 7.098 28 C -0.188 4.188 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.240 0.760 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.113 0.887 41 H 0.100 0.900 42 H 0.059 0.941 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -25.050 -1.037 9.998 26.991 hybrid contribution 0.781 -0.715 -1.210 1.608 sum -24.269 -1.751 8.788 25.870 Atomic orbital electron populations 1.20906 0.89211 1.03917 1.03486 1.19687 0.96966 0.91075 0.93691 1.21036 0.91471 1.00046 1.06175 1.17263 0.89640 0.79939 0.98071 1.91607 1.80574 1.44406 1.92990 1.19957 0.95257 0.92675 1.12924 1.17703 0.85730 0.77267 0.84592 1.90833 1.68990 1.49037 1.31116 1.45936 1.08107 1.73336 1.08068 1.21530 0.78052 1.03294 0.96597 1.22807 0.97848 0.87725 0.91122 0.92242 1.21438 0.90219 0.99999 0.88871 1.44058 1.52424 1.26925 1.08327 1.19155 1.13140 0.90067 1.16213 0.91359 1.25056 0.97237 0.95971 1.01382 1.70027 1.38260 1.13222 1.33169 0.86307 0.79001 0.80629 0.80463 1.20982 1.21538 1.20762 1.21451 0.88207 0.89277 0.99713 1.23332 0.99003 1.00192 0.81287 1.87799 1.80079 1.37656 1.25355 1.17251 0.89647 0.79860 0.98397 1.91591 1.80606 1.44500 1.93088 1.21019 0.91455 1.00022 1.06260 0.89854 0.90504 0.90491 0.83297 0.76008 0.90238 0.89729 0.95137 0.91694 0.93417 0.95324 0.88733 0.90001 0.94097 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.35 10.00 36.01 0.36 0.01 16 2 C -0.01 -0.08 5.88 -104.57 -0.62 -0.70 16 3 C -0.17 -1.26 9.65 -39.56 -0.38 -1.64 16 4 C 0.17 1.87 7.29 -38.97 -0.28 1.58 16 5 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16 6 C -0.20 -2.51 5.64 -104.86 -0.59 -3.10 16 7 C 0.56 8.71 6.54 -12.47 -0.08 8.63 16 8 O -0.52 -9.90 17.11 5.29 0.09 -9.81 16 9 N -0.70 -10.19 5.50 -61.34 -0.34 -10.53 16 10 C 0.13 2.02 5.34 -4.04 -0.02 2.00 16 11 C 0.06 1.15 2.81 -26.58 -0.07 1.07 16 12 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 13 C 0.12 2.56 6.02 -3.53 -0.02 2.53 16 14 N -0.59 -14.85 3.05 -171.82 -0.52 -15.38 16 15 C -0.26 -6.96 9.65 -15.06 -0.15 -7.11 16 16 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 17 C 0.00 0.06 4.95 -17.43 -0.09 -0.02 16 18 N -0.90 -25.93 11.14 55.49 0.62 -25.31 16 19 Si 0.91 21.40 29.59 -169.99 -5.03 16.37 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.14 3.31 5.45 -3.54 -0.02 3.29 16 24 C 0.04 0.76 6.99 37.31 0.26 1.02 16 25 O -0.39 -7.37 10.33 -35.23 -0.36 -7.74 16 26 C 0.17 1.79 7.29 -38.97 -0.28 1.50 16 27 F -0.12 -1.43 16.83 2.25 0.04 -1.40 16 28 C -0.17 -1.23 9.65 -39.56 -0.38 -1.61 16 29 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.16 8.08 -51.93 -0.42 -0.26 16 31 H 0.08 0.16 8.08 -51.93 -0.42 -0.25 16 32 H 0.15 0.76 8.06 -52.48 -0.42 0.33 16 33 H 0.41 5.19 8.46 -40.82 -0.35 4.84 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.06 1.29 7.96 -51.93 -0.41 0.87 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 2.46 6.14 -51.92 -0.32 2.14 16 41 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 371.02 15.07 5.59 5.59 Total: -1.00 -33.00 371.02 -7.94 -40.94 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.69 Total: 1.27 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -2.37 Total: 7.46 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.24 Total: -51.22 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.27 Total: -17.55 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.08 Total: -2.86 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.00 -7.94 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035438030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.910 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds