Wall clock time and date at job start Sat Apr 11 2020 05:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38307 * 119.80500 * 2 1 4 4 C 1.38220 * 120.18810 * 179.97438 * 3 2 1 5 5 F 1.35099 * 120.09770 * 179.97438 * 4 3 2 6 6 C 1.39901 * 119.80654 * 0.02562 * 4 3 2 7 7 C 1.47548 * 120.18835 * 179.97438 * 6 4 3 8 8 O 1.21586 * 119.99782 * 89.99724 * 7 6 4 9 9 N 1.34772 * 119.99802 * 270.27676 * 7 6 4 10 10 C 1.46507 * 119.99694 * 179.72473 * 9 7 6 11 11 C 1.52999 * 109.46777 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.51590 * 305.09752 * 11 10 9 13 13 C 1.53297 * 109.51043 * 184.99905 * 11 10 9 14 14 N 1.47155 * 108.38665 * 187.77369 * 13 11 10 15 15 C 1.36930 * 120.98242 * 230.55526 * 14 13 11 16 16 H 1.08002 * 120.00029 * 26.24234 * 15 14 13 17 17 C 1.38813 * 120.00108 * 206.24121 * 15 14 13 18 18 N 1.31623 * 119.99652 * 16.90594 * 17 15 14 19 19 Si 1.86796 * 120.00138 * 196.90927 * 17 15 14 20 20 H 1.48504 * 109.47123 * 59.99927 * 19 17 15 21 21 H 1.48499 * 109.47047 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47179 * 300.00104 * 19 17 15 23 23 C 1.47150 * 118.02991 * 50.53656 * 14 13 11 24 24 C 1.53293 * 108.38855 * 309.46045 * 23 14 13 25 25 O 1.42964 * 109.51266 * 65.25715 * 11 10 9 26 26 C 1.39900 * 119.62147 * 0.25311 * 6 4 3 27 27 F 1.35101 * 120.09428 * 179.72430 * 26 6 4 28 28 C 1.38218 * 119.81039 * 359.45175 * 26 6 4 29 29 H 1.09001 * 109.46580 * 90.00366 * 1 2 3 30 30 H 1.08998 * 109.46929 * 210.00224 * 1 2 3 31 31 H 1.08994 * 109.47134 * 330.00381 * 1 2 3 32 32 H 1.08004 * 119.90459 * 359.97438 * 3 2 1 33 33 H 0.96999 * 120.00606 * 359.72503 * 9 7 6 34 34 H 1.08998 * 109.46934 * 299.99748 * 10 9 7 35 35 H 1.08995 * 109.46961 * 59.99614 * 10 9 7 36 36 H 1.09008 * 109.68207 * 307.49826 * 13 11 10 37 37 H 1.08996 * 109.68227 * 68.01267 * 13 11 10 38 38 H 0.96999 * 119.99472 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.68674 * 69.19241 * 23 14 13 40 40 H 1.09012 * 109.67664 * 189.70515 * 23 14 13 41 41 H 1.08998 * 109.51273 * 172.22970 * 24 23 14 42 42 H 1.08995 * 109.51430 * 292.38404 * 24 23 14 43 43 H 1.07994 * 119.91036 * 180.32117 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5767 1.2094 0.0005 5 9 4.2463 2.3827 0.0000 6 6 4.2802 0.0001 0.0005 7 6 5.7557 0.0001 0.0005 8 8 6.3636 0.0002 1.0535 9 7 6.4295 0.0058 -1.1666 10 6 7.8945 0.0119 -1.1666 11 6 8.4045 0.0169 -2.6091 12 1 7.9724 -0.8244 -3.1509 13 6 9.9328 -0.1026 -2.6123 14 7 10.4108 0.0924 -3.9903 15 6 11.2728 -0.7995 -4.5703 16 1 11.2906 -1.8271 -4.2383 17 6 12.1236 -0.3830 -5.5849 18 7 12.3511 0.9005 -5.7676 19 14 12.9457 -1.6440 -6.6909 20 1 11.9064 -2.4358 -7.3967 21 1 13.7983 -0.9474 -7.6874 22 1 13.7855 -2.5514 -5.8683 23 6 9.9346 1.2741 -4.7266 24 6 8.4063 1.3266 -4.6206 25 8 8.0268 1.2404 -3.2449 26 6 3.5767 -1.2091 -0.0054 27 9 4.2464 -2.3825 -0.0111 28 6 2.1946 -1.2001 0.0003 29 1 -0.3632 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5137 32 1 1.6498 2.1327 -0.0004 33 1 5.9446 0.0058 -2.0067 34 1 8.2541 0.9022 -0.6506 35 1 8.2615 -0.8777 -0.6549 36 1 10.3621 0.6608 -1.9633 37 1 10.2244 -1.0914 -2.2585 38 1 12.9459 1.1914 -6.4763 39 1 10.3641 2.1761 -4.2906 40 1 10.2280 1.1970 -5.7737 41 1 8.0442 2.2652 -5.0400 42 1 7.9742 0.4906 -5.1705 43 1 1.6499 -2.1326 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035438030.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:46 Heat of formation + Delta-G solvation = -143.740913 kcal Electronic energy + Delta-G solvation = -29330.394794 eV Core-core repulsion = 24818.445757 eV Total energy + Delta-G solvation = -4511.949037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.23921 -50.21598 -41.23512 -40.20910 -39.58489 -36.59266 -35.91400 -34.03226 -33.35711 -32.33059 -31.54048 -29.54920 -28.71017 -27.00283 -25.03180 -24.09512 -24.01612 -23.18203 -22.03142 -21.35932 -19.38372 -18.87825 -18.63441 -18.54357 -17.73827 -17.49545 -16.99873 -16.91801 -16.90326 -16.51880 -16.32294 -16.20619 -15.77804 -15.60497 -15.52233 -15.09414 -14.95011 -14.62808 -14.47877 -14.37325 -14.20791 -13.81579 -13.28112 -13.04644 -12.98477 -12.97911 -12.75565 -12.70458 -12.58117 -12.52559 -12.21852 -12.13927 -11.91357 -11.48759 -11.29944 -10.84212 -10.57302 -10.36936 -9.99652 -9.93739 -8.79005 -7.93498 -5.41224 -0.40754 -0.16800 1.17563 1.46056 1.47960 1.55222 1.83988 2.15636 2.46159 2.58495 2.70391 3.18075 3.21407 3.31537 3.43496 3.58964 3.68545 3.89296 3.98644 4.02313 4.18048 4.40749 4.45237 4.48490 4.53859 4.54773 4.59193 4.64468 4.67859 4.71904 4.84656 4.91493 4.91861 4.99407 5.13038 5.19984 5.27367 5.29803 5.52345 5.58399 5.62736 6.19983 6.20879 6.29541 6.85768 7.03392 7.70999 8.25005 9.12657 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021092 B = 0.002350 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.192991 B =11911.653083 C =12193.957759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.002 3.998 3 C -0.156 4.156 4 C 0.149 3.851 5 F -0.136 7.136 6 C -0.229 4.229 7 C 0.563 3.437 8 O -0.568 6.568 9 N -0.697 5.697 10 C 0.138 3.862 11 C 0.080 3.920 12 H 0.071 0.929 13 C 0.117 3.883 14 N -0.612 5.612 15 C -0.269 4.269 16 H 0.073 0.927 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.974 3.026 20 H -0.275 1.275 21 H -0.294 1.294 22 H -0.276 1.276 23 C 0.143 3.857 24 C 0.054 3.946 25 O -0.391 6.391 26 C 0.151 3.849 27 F -0.134 7.134 28 C -0.155 4.155 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.415 0.585 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.018 0.982 37 H 0.074 0.926 38 H 0.252 0.748 39 H -0.001 1.001 40 H 0.069 0.931 41 H 0.110 0.890 42 H 0.052 0.948 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.230 -2.359 9.097 30.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.001 3.999 3 C -0.174 4.174 4 C 0.129 3.871 5 F -0.114 7.114 6 C -0.234 4.234 7 C 0.348 3.652 8 O -0.448 6.448 9 N -0.347 5.347 10 C 0.014 3.986 11 C 0.021 3.979 12 H 0.089 0.911 13 C -0.009 4.009 14 N -0.337 5.337 15 C -0.398 4.398 16 H 0.091 0.909 17 C -0.246 4.246 18 N -0.581 5.581 19 Si 0.801 3.199 20 H -0.200 1.200 21 H -0.220 1.220 22 H -0.201 1.201 23 C 0.017 3.983 24 C -0.024 4.024 25 O -0.310 6.310 26 C 0.131 3.869 27 F -0.112 7.112 28 C -0.174 4.174 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.194 0.806 33 H 0.251 0.749 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.036 0.964 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -28.683 -2.147 9.804 30.388 hybrid contribution 1.819 -0.360 -1.089 2.151 sum -26.864 -2.507 8.715 28.353 Atomic orbital electron populations 1.21047 0.86164 1.05409 1.04811 1.20149 0.98816 0.89941 0.90967 1.21398 0.89883 1.01926 1.04235 1.17570 0.90889 0.78848 0.99778 1.91556 1.81218 1.45268 1.93402 1.19810 0.93191 0.94271 1.16107 1.18215 0.87256 0.75860 0.83850 1.90792 1.70380 1.51070 1.32517 1.45853 1.07467 1.72854 1.08570 1.21322 0.79100 1.03109 0.95092 1.22629 0.95421 0.87702 0.92180 0.91102 1.21582 0.92411 1.00077 0.86838 1.44335 1.52578 1.26817 1.09950 1.19517 1.13239 0.90707 1.16366 0.90940 1.25859 0.98214 0.97714 1.02802 1.70190 1.39186 1.15060 1.33693 0.85253 0.78004 0.78257 0.78390 1.20042 1.21967 1.20144 1.21320 0.91343 0.87806 0.97790 1.23182 0.95334 1.02172 0.81700 1.87814 1.79634 1.38317 1.25277 1.17516 0.90822 0.78776 0.99782 1.91550 1.81170 1.45105 1.93411 1.21399 0.89917 1.01875 1.04169 0.88325 0.89021 0.89127 0.80593 0.74907 0.91578 0.88918 0.96371 0.90789 0.93867 0.98304 0.91237 0.87255 0.92974 0.80422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.11 10.00 71.24 0.71 0.60 16 2 C 0.00 0.01 5.88 -19.83 -0.12 -0.10 16 3 C -0.16 -1.89 9.65 22.28 0.22 -1.68 16 4 C 0.15 3.14 7.29 22.67 0.17 3.31 16 5 F -0.14 -3.49 16.83 44.97 0.76 -2.73 16 6 C -0.23 -5.63 5.64 -20.02 -0.11 -5.74 16 7 C 0.56 17.80 6.54 86.70 0.57 18.37 16 8 O -0.57 -22.36 17.11 -3.99 -0.07 -22.43 16 9 N -0.70 -20.23 5.50 -466.26 -2.57 -22.80 16 10 C 0.14 4.36 5.34 86.38 0.46 4.82 16 11 C 0.08 2.80 2.81 30.69 0.09 2.89 16 12 H 0.07 2.36 8.14 -2.39 -0.02 2.35 16 13 C 0.12 4.97 6.02 86.35 0.52 5.49 16 14 N -0.61 -31.12 3.05 -697.52 -2.13 -33.24 16 15 C -0.27 -14.71 9.65 84.03 0.81 -13.90 16 16 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 17 C -0.05 -2.79 4.95 84.86 0.42 -2.37 16 18 N -0.94 -55.17 11.14 21.65 0.24 -54.93 16 19 Si 0.97 44.31 29.59 68.60 2.03 46.34 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.14 6.96 5.45 86.35 0.47 7.43 16 24 C 0.05 2.02 6.99 72.08 0.50 2.52 16 25 O -0.39 -14.51 10.33 -148.98 -1.54 -16.05 16 26 C 0.15 3.04 7.29 22.67 0.17 3.21 16 27 F -0.13 -3.16 16.83 44.97 0.76 -2.41 16 28 C -0.16 -1.79 9.65 22.28 0.22 -1.57 16 29 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.09 -0.10 8.08 -2.39 -0.02 -0.12 16 31 H 0.09 -0.08 8.08 -2.39 -0.02 -0.10 16 32 H 0.18 1.13 8.06 -2.91 -0.02 1.11 16 33 H 0.41 10.39 8.46 -92.71 -0.78 9.61 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.07 2.95 7.96 -2.39 -0.02 2.93 16 38 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 39 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.07 3.72 6.14 -2.38 -0.01 3.70 16 41 H 0.11 3.51 8.14 -2.39 -0.02 3.49 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -74.47 371.02 2.84 -71.64 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.27 Total: 13.33 kcal Atomic # 6 Polarization: 18.19 SS G_CDS: 5.08 Total: 23.27 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.45 Total: -110.97 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.61 Total: -38.47 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 1.51 Total: -5.14 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -74.47 2.84 -71.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035438030.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.105 kcal (2) G-P(sol) polarization free energy of solvation -74.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds