Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38447 * 119.84319 * 2 1 4 4 C 1.37845 * 120.24085 * 180.02562 * 3 2 1 5 5 C 1.39680 * 119.92464 * 359.97438 * 4 3 2 6 6 C 1.47701 * 120.15591 * 179.97438 * 5 4 3 7 7 O 1.21571 * 120.00437 * 180.02562 * 6 5 4 8 8 N 1.34784 * 119.99806 * 359.97438 * 6 5 4 9 9 C 1.46501 * 119.99856 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47142 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.51071 * 304.99903 * 10 9 8 12 12 C 1.53287 * 109.51253 * 184.89851 * 10 9 8 13 13 N 1.47155 * 108.38647 * 187.77258 * 12 10 9 14 14 C 1.36928 * 120.98336 * 230.55891 * 13 12 10 15 15 H 1.08001 * 120.00531 * 26.58668 * 14 13 12 16 16 C 1.38814 * 119.99765 * 206.58694 * 14 13 12 17 17 N 1.31623 * 120.00351 * 17.02124 * 16 14 13 18 18 Si 1.86800 * 120.00026 * 197.02750 * 16 14 13 19 19 H 1.48500 * 109.47689 * 94.15057 * 18 16 14 20 20 H 1.48499 * 109.47153 * 214.15080 * 18 16 14 21 21 H 1.48503 * 109.47207 * 334.14932 * 18 16 14 22 22 C 1.47157 * 118.03278 * 50.53522 * 13 12 10 23 23 C 1.53298 * 108.38221 * 309.46912 * 22 13 12 24 24 O 1.42955 * 109.26874 * 52.27809 * 23 22 13 25 25 C 1.39759 * 119.69298 * 0.24916 * 5 4 3 26 26 F 1.35095 * 120.12507 * 179.72770 * 25 5 4 27 27 C 1.38383 * 119.84353 * 180.02562 * 2 1 3 28 28 F 1.35100 * 119.96286 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47684 * 89.99870 * 1 2 3 30 30 H 1.08997 * 109.47206 * 210.00676 * 1 2 3 31 31 H 1.09006 * 109.46966 * 329.99632 * 1 2 3 32 32 H 1.07998 * 119.88317 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.03941 * 180.02562 * 4 3 2 34 34 H 0.97000 * 119.99975 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.46851 * 299.99700 * 9 8 6 36 36 H 1.08997 * 109.47272 * 59.99613 * 9 8 6 37 37 H 1.09003 * 109.68203 * 307.49459 * 12 10 9 38 38 H 1.09005 * 109.68294 * 68.01230 * 12 10 9 39 39 H 0.96996 * 120.00350 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.68086 * 69.18407 * 22 13 12 41 41 H 1.08992 * 109.68394 * 189.70968 * 22 13 12 42 42 H 1.09002 * 109.50784 * 172.23126 * 23 22 13 43 43 H 1.09000 * 109.51092 * 292.37321 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5743 1.2104 -0.0005 5 6 4.2795 0.0047 -0.0005 6 6 5.7565 0.0090 -0.0017 7 8 6.3675 -1.0420 -0.0021 8 7 6.4270 1.1783 -0.0032 9 6 7.8920 1.1825 -0.0049 10 6 8.3978 2.6265 -0.0071 11 1 7.9610 3.1640 -0.8489 12 6 9.9255 2.6337 -0.1323 13 7 10.4002 4.0138 0.0559 14 6 11.2571 4.5930 -0.8414 15 1 11.2683 4.2612 -1.8691 16 6 12.1116 5.6067 -0.4301 17 7 12.3491 5.7877 0.8518 18 14 12.9243 6.7143 -1.6959 19 1 12.1052 7.9390 -1.8809 20 1 14.2807 7.0926 -1.2245 21 1 13.0333 5.9917 -2.9887 22 6 9.9263 4.7533 1.2366 23 6 8.3984 4.6427 1.2951 24 8 8.0216 3.2660 1.2149 25 6 3.5810 -1.2058 -0.0053 26 9 4.2543 -2.3770 -0.0109 27 6 2.1956 -1.2003 -0.0005 28 9 1.5161 -2.3680 -0.0016 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6514 2.1336 0.0004 33 1 4.1084 2.1491 -0.0001 34 1 5.9395 2.0169 -0.0040 35 1 8.2578 0.6704 0.8850 36 1 8.2558 0.6691 -0.8949 37 1 10.3595 1.9889 0.6319 38 1 10.2146 2.2771 -1.1210 39 1 12.9459 6.4962 1.1393 40 1 10.3602 4.3217 2.1386 41 1 10.2162 5.8007 1.1546 42 1 8.0385 5.0647 2.2335 43 1 7.9616 5.1883 0.4586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035518757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = -119.012090 kcal Electronic energy + Delta-G solvation = -29061.885019 eV Core-core repulsion = 24551.008305 eV Total energy + Delta-G solvation = -4510.876715 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -49.75821 -48.80451 -40.33807 -38.94574 -38.32948 -35.04343 -34.37582 -33.40794 -31.62673 -30.93265 -30.59079 -28.42242 -27.35873 -25.48914 -23.36406 -23.26436 -23.08889 -21.88168 -20.87142 -19.77104 -18.61714 -17.77741 -17.35566 -16.93786 -16.75371 -16.49609 -16.10832 -15.72971 -15.30866 -15.09970 -14.92372 -14.80987 -14.64612 -14.40900 -14.16157 -13.91964 -13.82574 -13.57558 -13.27305 -13.13925 -12.81917 -12.78615 -12.53544 -12.27433 -12.04288 -12.02013 -11.61959 -11.17605 -10.91102 -10.78369 -10.47200 -10.30165 -10.13108 -10.03069 -9.72085 -9.38946 -9.19944 -9.14254 -9.05077 -8.59780 -6.81352 -5.89528 -3.33731 0.11345 0.47923 2.39022 2.85105 3.23072 3.30653 3.37026 3.38547 3.39724 3.91583 4.06399 4.11704 4.16726 4.37870 4.38445 4.46668 4.84059 5.01117 5.03565 5.09119 5.25573 5.28582 5.40633 5.41860 5.45187 5.46543 5.54971 5.67344 5.72690 5.78336 5.95779 6.07580 6.20089 6.22325 6.30246 6.39131 6.42418 6.69758 7.03591 7.36361 7.45592 7.66023 7.77756 8.05545 8.27970 9.05946 9.68458 10.25271 11.18659 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.002121 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.505378 B =13199.874013 C =13677.393065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.111 4.111 4 C -0.061 4.061 5 C -0.148 4.148 6 C 0.555 3.445 7 O -0.524 6.524 8 N -0.711 5.711 9 C 0.130 3.870 10 C 0.065 3.935 11 H 0.060 0.940 12 C 0.121 3.879 13 N -0.594 5.594 14 C -0.257 4.257 15 H 0.069 0.931 16 C 0.003 3.997 17 N -0.902 5.902 18 Si 0.906 3.094 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.278 1.278 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.390 6.390 25 C 0.132 3.868 26 F -0.103 7.103 27 C 0.052 3.948 28 F -0.124 7.124 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.255 0.745 40 H 0.029 0.971 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.346 -7.124 -1.242 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.069 4.069 3 C -0.129 4.129 4 C -0.080 4.080 5 C -0.152 4.152 6 C 0.340 3.660 7 O -0.401 6.401 8 N -0.362 5.362 9 C 0.007 3.993 10 C 0.005 3.995 11 H 0.077 0.923 12 C -0.006 4.006 13 N -0.317 5.317 14 C -0.386 4.386 15 H 0.087 0.913 16 C -0.196 4.196 17 N -0.546 5.546 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.309 6.309 25 C 0.111 3.889 26 F -0.080 7.080 27 C 0.032 3.968 28 F -0.102 7.102 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.112 0.888 42 H 0.100 0.900 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -23.811 -7.940 -1.027 25.121 hybrid contribution 0.495 0.796 -0.695 1.167 sum -23.316 -7.145 -1.723 24.447 Atomic orbital electron populations 1.20843 0.88989 1.04154 1.03591 1.20064 0.97702 0.90969 0.98185 1.20954 0.93645 0.97585 1.00764 1.21343 0.94346 0.96951 0.95333 1.19997 0.94618 0.92370 1.08246 1.17827 0.86030 0.84447 0.77678 1.90863 1.69171 1.31028 1.49044 1.45815 1.08075 1.07984 1.74343 1.21498 0.78072 0.96426 1.03331 1.22812 0.97917 0.91112 0.87684 0.92252 1.21440 0.90260 0.88849 1.00039 1.44068 1.52827 1.08073 1.26777 1.19210 1.13197 1.16234 0.89943 0.91281 1.25067 0.97155 1.01410 0.95989 1.70037 1.38067 1.33066 1.13426 0.86219 0.78532 0.80871 0.80811 1.21390 1.21661 1.20303 1.21440 0.88249 0.99623 0.89350 1.23328 0.99040 0.81231 1.00203 1.87789 1.80192 1.25194 1.37766 1.17626 0.87965 0.82256 1.01102 1.91634 1.79733 1.43967 1.92713 1.17354 0.87771 0.82623 1.09072 1.91529 1.79259 1.45319 1.94126 0.89873 0.90593 0.90050 0.83451 0.83608 0.76201 0.90278 0.89757 0.95135 0.91684 0.93460 0.95309 0.88823 0.89987 0.94078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.54 9.82 36.00 0.35 -0.18 16 2 C -0.07 -0.48 5.89 -104.49 -0.62 -1.10 16 3 C -0.11 -0.66 9.67 -39.65 -0.38 -1.04 16 4 C -0.06 -0.46 9.54 -39.19 -0.37 -0.83 16 5 C -0.15 -1.66 5.88 -104.92 -0.62 -2.28 16 6 C 0.55 7.77 7.77 -12.39 -0.10 7.68 16 7 O -0.52 -9.40 15.34 5.30 0.08 -9.32 16 8 N -0.71 -8.90 5.46 -61.29 -0.33 -9.23 16 9 C 0.13 1.88 5.34 -4.04 -0.02 1.86 16 10 C 0.06 1.06 2.81 -26.58 -0.07 0.99 16 11 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 12 C 0.12 2.44 6.02 -3.54 -0.02 2.42 16 13 N -0.59 -14.42 3.05 -171.83 -0.52 -14.94 16 14 C -0.26 -6.81 9.64 -15.06 -0.15 -6.95 16 15 H 0.07 1.79 7.89 -52.49 -0.41 1.38 16 16 C 0.00 0.07 4.94 -17.43 -0.09 -0.01 16 17 N -0.90 -25.50 11.18 55.49 0.62 -24.88 16 18 Si 0.91 21.04 29.59 -169.99 -5.03 16.01 16 19 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 C 0.14 3.20 5.44 -3.53 -0.02 3.18 16 23 C 0.04 0.72 6.98 37.31 0.26 0.98 16 24 O -0.39 -6.86 10.33 -35.23 -0.36 -7.22 16 25 C 0.13 1.61 7.29 -38.90 -0.28 1.33 16 26 F -0.10 -1.54 15.46 2.25 0.03 -1.50 16 27 C 0.05 0.52 7.24 -39.41 -0.29 0.24 16 28 F -0.12 -1.33 16.37 2.25 0.04 -1.29 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.08 0.37 7.62 -51.93 -0.40 -0.03 16 31 H 0.08 0.22 8.08 -51.93 -0.42 -0.20 16 32 H 0.15 0.43 8.06 -52.49 -0.42 0.00 16 33 H 0.15 0.77 6.40 -52.49 -0.34 0.44 16 34 H 0.40 4.06 6.50 -40.82 -0.27 3.79 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.24 7.96 -51.93 -0.41 0.83 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 364.51 15.07 5.49 5.49 Total: -1.00 -32.74 364.51 -7.90 -40.63 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -5.50 Total: -0.02 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.41 Total: 6.27 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: -0.24 Total: -49.05 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: -0.28 Total: -16.54 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.07 Total: -2.79 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.74 -7.90 -40.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035518757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.377 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds