Wall clock time and date at job start Sat Apr 11 2020 05:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38447 * 119.84319 * 2 1 4 4 C 1.37845 * 120.24085 * 180.02562 * 3 2 1 5 5 C 1.39680 * 119.92464 * 359.97438 * 4 3 2 6 6 C 1.47701 * 120.15591 * 179.97438 * 5 4 3 7 7 O 1.21571 * 120.00437 * 180.02562 * 6 5 4 8 8 N 1.34784 * 119.99806 * 359.97438 * 6 5 4 9 9 C 1.46501 * 119.99856 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.47142 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.51071 * 304.99903 * 10 9 8 12 12 C 1.53287 * 109.51253 * 184.89851 * 10 9 8 13 13 N 1.47155 * 108.38647 * 187.77258 * 12 10 9 14 14 C 1.36928 * 120.98336 * 230.55891 * 13 12 10 15 15 H 1.08001 * 120.00531 * 26.58668 * 14 13 12 16 16 C 1.38814 * 119.99765 * 206.58694 * 14 13 12 17 17 N 1.31623 * 120.00351 * 17.02124 * 16 14 13 18 18 Si 1.86800 * 120.00026 * 197.02750 * 16 14 13 19 19 H 1.48500 * 109.47689 * 94.15057 * 18 16 14 20 20 H 1.48499 * 109.47153 * 214.15080 * 18 16 14 21 21 H 1.48503 * 109.47207 * 334.14932 * 18 16 14 22 22 C 1.47157 * 118.03278 * 50.53522 * 13 12 10 23 23 C 1.53298 * 108.38221 * 309.46912 * 22 13 12 24 24 O 1.42955 * 109.26874 * 52.27809 * 23 22 13 25 25 C 1.39759 * 119.69298 * 0.24916 * 5 4 3 26 26 F 1.35095 * 120.12507 * 179.72770 * 25 5 4 27 27 C 1.38383 * 119.84353 * 180.02562 * 2 1 3 28 28 F 1.35100 * 119.96286 * 0.02562 * 27 2 1 29 29 H 1.09000 * 109.47684 * 89.99870 * 1 2 3 30 30 H 1.08997 * 109.47206 * 210.00676 * 1 2 3 31 31 H 1.09006 * 109.46966 * 329.99632 * 1 2 3 32 32 H 1.07998 * 119.88317 * 0.02562 * 3 2 1 33 33 H 1.07998 * 120.03941 * 180.02562 * 4 3 2 34 34 H 0.97000 * 119.99975 * 359.97438 * 8 6 5 35 35 H 1.08999 * 109.46851 * 299.99700 * 9 8 6 36 36 H 1.08997 * 109.47272 * 59.99613 * 9 8 6 37 37 H 1.09003 * 109.68203 * 307.49459 * 12 10 9 38 38 H 1.09005 * 109.68294 * 68.01230 * 12 10 9 39 39 H 0.96996 * 120.00350 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.68086 * 69.18407 * 22 13 12 41 41 H 1.08992 * 109.68394 * 189.70968 * 22 13 12 42 42 H 1.09002 * 109.50784 * 172.23126 * 23 22 13 43 43 H 1.09000 * 109.51092 * 292.37321 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5743 1.2104 -0.0005 5 6 4.2795 0.0047 -0.0005 6 6 5.7565 0.0090 -0.0017 7 8 6.3675 -1.0420 -0.0021 8 7 6.4270 1.1783 -0.0032 9 6 7.8920 1.1825 -0.0049 10 6 8.3978 2.6265 -0.0071 11 1 7.9610 3.1640 -0.8489 12 6 9.9255 2.6337 -0.1323 13 7 10.4002 4.0138 0.0559 14 6 11.2571 4.5930 -0.8414 15 1 11.2683 4.2612 -1.8691 16 6 12.1116 5.6067 -0.4301 17 7 12.3491 5.7877 0.8518 18 14 12.9243 6.7143 -1.6959 19 1 12.1052 7.9390 -1.8809 20 1 14.2807 7.0926 -1.2245 21 1 13.0333 5.9917 -2.9887 22 6 9.9263 4.7533 1.2366 23 6 8.3984 4.6427 1.2951 24 8 8.0216 3.2660 1.2149 25 6 3.5810 -1.2058 -0.0053 26 9 4.2543 -2.3770 -0.0109 27 6 2.1956 -1.2003 -0.0005 28 9 1.5161 -2.3680 -0.0016 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6514 2.1336 0.0004 33 1 4.1084 2.1491 -0.0001 34 1 5.9395 2.0169 -0.0040 35 1 8.2578 0.6704 0.8850 36 1 8.2558 0.6691 -0.8949 37 1 10.3595 1.9889 0.6319 38 1 10.2146 2.2771 -1.1210 39 1 12.9459 6.4962 1.1393 40 1 10.3602 4.3217 2.1386 41 1 10.2162 5.8007 1.1546 42 1 8.0385 5.0647 2.2335 43 1 7.9616 5.1883 0.4586 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035518757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:56 Heat of formation + Delta-G solvation = -140.795157 kcal Electronic energy + Delta-G solvation = -29062.829604 eV Core-core repulsion = 24551.008305 eV Total energy + Delta-G solvation = -4511.821299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.60178 -49.68476 -41.30937 -40.16242 -39.42046 -36.55039 -35.87650 -34.11056 -33.32467 -32.33162 -31.43588 -29.49218 -28.65868 -26.95947 -24.99269 -24.11816 -23.91265 -23.20788 -21.93819 -21.30474 -19.56059 -18.88616 -18.54223 -18.13859 -17.63409 -17.48988 -17.37609 -16.98255 -16.72217 -16.27875 -16.12132 -15.87804 -15.61469 -15.59642 -15.45472 -15.16820 -14.99871 -14.62321 -14.46025 -14.32134 -14.12972 -13.79748 -13.35916 -13.20941 -13.01061 -12.79463 -12.72099 -12.70114 -12.66821 -12.52213 -12.15719 -12.06784 -11.87452 -11.37082 -11.16824 -10.79387 -10.54542 -10.32585 -9.92321 -9.90044 -8.75612 -7.91399 -5.39122 -0.60484 -0.19609 1.47510 1.48455 1.56077 1.57967 1.85495 2.40761 2.47669 2.63400 2.77371 3.22092 3.23751 3.33199 3.48208 3.55118 3.68591 3.88019 3.97544 4.05765 4.24076 4.36595 4.41703 4.49419 4.52718 4.62099 4.69582 4.72561 4.77088 4.77892 4.88953 4.91352 4.96105 5.05886 5.15386 5.17592 5.24413 5.25234 5.56385 5.60456 5.62176 6.25788 6.32985 6.38078 7.03728 7.06322 7.74192 8.27711 9.14616 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.025414 B = 0.002121 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.505378 B =13199.874013 C =13677.393065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.093 4.093 4 C -0.047 4.047 5 C -0.166 4.166 6 C 0.553 3.447 7 O -0.574 6.574 8 N -0.697 5.697 9 C 0.140 3.860 10 C 0.081 3.919 11 H 0.077 0.923 12 C 0.115 3.885 13 N -0.612 5.612 14 C -0.265 4.265 15 H 0.073 0.927 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.268 1.268 22 C 0.141 3.859 23 C 0.055 3.945 24 O -0.389 6.389 25 C 0.097 3.903 26 F -0.132 7.132 27 C 0.036 3.964 28 F -0.134 7.134 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.194 0.806 33 H 0.175 0.825 34 H 0.417 0.583 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.015 0.985 38 H 0.072 0.928 39 H 0.251 0.749 40 H -0.003 1.003 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.508 -5.020 -2.268 28.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.110 4.110 4 C -0.066 4.066 5 C -0.171 4.171 6 C 0.341 3.659 7 O -0.455 6.455 8 N -0.349 5.349 9 C 0.015 3.985 10 C 0.022 3.978 11 H 0.095 0.905 12 C -0.011 4.011 13 N -0.337 5.337 14 C -0.395 4.395 15 H 0.091 0.909 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.799 3.201 19 H -0.208 1.208 20 H -0.225 1.225 21 H -0.192 1.192 22 C 0.016 3.984 23 C -0.022 4.022 24 O -0.308 6.308 25 C 0.075 3.925 26 F -0.110 7.110 27 C 0.015 3.985 28 F -0.113 7.113 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.211 0.789 33 H 0.192 0.808 34 H 0.256 0.744 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.033 0.967 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.015 0.985 41 H 0.085 0.915 42 H 0.128 0.872 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.020 -5.827 -2.065 27.718 hybrid contribution 1.423 0.125 -0.360 1.473 sum -25.597 -5.702 -2.424 26.336 Atomic orbital electron populations 1.20986 0.86746 1.05240 1.04716 1.20517 0.99241 0.90096 0.95758 1.21478 0.92960 0.98694 0.97913 1.21705 0.95238 0.96285 0.93367 1.19851 0.92848 0.93546 1.10810 1.18264 0.87312 0.83826 0.76485 1.90835 1.70447 1.32767 1.51413 1.45601 1.07136 1.08445 1.73736 1.21253 0.79395 0.94854 1.02959 1.22619 0.95071 0.92230 0.87911 0.90522 1.21606 0.92915 0.86673 0.99950 1.44352 1.52951 1.09749 1.26638 1.19559 1.13165 1.16175 0.90583 0.90914 1.25844 0.98190 1.02924 0.97656 1.70195 1.39081 1.33665 1.15244 0.85193 0.76993 0.79078 0.78803 1.20791 1.22467 1.19236 1.21334 0.91794 0.97592 0.87723 1.23161 0.94934 0.81771 1.02374 1.87807 1.79606 1.25011 1.38378 1.18074 0.89045 0.81825 1.03511 1.91545 1.80509 1.45644 1.93337 1.17624 0.87096 0.83478 1.10261 1.91495 1.79231 1.46215 1.94356 0.88534 0.91288 0.87246 0.78892 0.80803 0.74420 0.91897 0.89188 0.96674 0.90936 0.93950 0.98538 0.91478 0.87188 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.82 71.23 0.70 0.09 16 2 C -0.05 -0.61 5.89 -19.78 -0.12 -0.72 16 3 C -0.09 -0.64 9.67 22.23 0.22 -0.42 16 4 C -0.05 -0.53 9.54 22.53 0.21 -0.32 16 5 C -0.17 -3.58 5.88 -20.06 -0.12 -3.69 16 6 C 0.55 15.39 7.77 86.74 0.67 16.06 16 7 O -0.57 -21.44 15.34 -3.94 -0.06 -21.50 16 8 N -0.70 -16.24 5.46 -466.10 -2.54 -18.78 16 9 C 0.14 3.90 5.34 86.38 0.46 4.36 16 10 C 0.08 2.52 2.81 30.69 0.09 2.61 16 11 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 12 C 0.11 4.60 6.02 86.35 0.52 5.12 16 13 N -0.61 -29.82 3.05 -697.54 -2.13 -31.94 16 14 C -0.27 -14.07 9.64 84.04 0.81 -13.26 16 15 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 16 C -0.05 -2.74 4.94 84.86 0.42 -2.32 16 17 N -0.94 -54.17 11.18 21.65 0.24 -53.93 16 18 Si 0.97 43.35 29.59 68.60 2.03 45.38 16 19 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 20 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 C 0.14 6.55 5.44 86.35 0.47 7.02 16 23 C 0.06 1.87 6.98 72.08 0.50 2.38 16 24 O -0.39 -12.78 10.33 -148.98 -1.54 -14.32 16 25 C 0.10 2.42 7.29 22.71 0.17 2.59 16 26 F -0.13 -4.29 15.46 44.97 0.70 -3.59 16 27 C 0.04 0.69 7.24 22.38 0.16 0.86 16 28 F -0.13 -2.93 16.37 44.97 0.74 -2.19 16 29 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.07 0.49 7.62 -2.39 -0.02 0.48 16 31 H 0.11 0.00 8.08 -2.38 -0.02 -0.02 16 32 H 0.19 -0.32 8.06 -2.91 -0.02 -0.35 16 33 H 0.17 0.92 6.40 -2.91 -0.02 0.90 16 34 H 0.42 7.00 6.50 -92.71 -0.60 6.39 16 35 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 39 H 0.25 14.08 8.31 -92.71 -0.77 13.30 16 40 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.07 3.46 6.17 -2.39 -0.01 3.44 16 42 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -75.86 364.51 3.06 -72.80 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.46 Total: 7.74 kcal Atomic # 6 Polarization: 15.17 SS G_CDS: 5.17 Total: 20.34 kcal Atomic # 7 Polarization: -100.22 SS G_CDS: -4.43 Total: -104.65 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.60 Total: -35.82 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 1.43 Total: -5.78 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -75.86 3.06 -72.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035518757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.997 kcal (2) G-P(sol) polarization free energy of solvation -75.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds