Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38231 * 119.84850 * 2 1 4 4 C 1.38272 * 120.14526 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.08121 * 180.02562 * 4 3 2 6 6 C 1.39833 * 119.83233 * 0.02562 * 4 3 2 7 7 C 1.47698 * 120.15413 * 179.97438 * 6 4 3 8 8 O 1.21569 * 119.99999 * 311.13625 * 7 6 4 9 9 N 1.34776 * 120.00217 * 131.13773 * 7 6 4 10 10 C 1.46491 * 120.00023 * 4.44733 * 9 7 6 11 11 C 1.46506 * 120.00024 * 184.45200 * 9 7 6 12 12 H 1.09000 * 110.88163 * 357.56671 * 11 9 7 13 13 C 1.54901 * 111.00677 * 121.45022 * 11 9 7 14 14 N 1.47421 * 104.83562 * 155.08049 * 13 11 9 15 15 C 1.36940 * 125.65115 * 155.90379 * 14 13 11 16 16 H 1.07990 * 120.00022 * 354.53409 * 15 14 13 17 17 C 1.38815 * 119.99982 * 174.53159 * 15 14 13 18 18 N 1.31622 * 119.99716 * 5.82494 * 17 15 14 19 19 Si 1.86794 * 120.00016 * 185.82550 * 17 15 14 20 20 H 1.48499 * 109.47125 * 94.99302 * 19 17 15 21 21 H 1.48496 * 109.47379 * 214.99238 * 19 17 15 22 22 H 1.48500 * 109.47092 * 334.99718 * 19 17 15 23 23 C 1.47023 * 108.70090 * 335.87315 * 14 13 11 24 24 C 1.54320 * 107.27358 * 1.05891 * 23 14 13 25 25 H 1.09001 * 110.71850 * 263.83274 * 24 23 14 26 26 O 1.42901 * 110.72498 * 140.55407 * 24 23 14 27 27 C 1.39622 * 119.69327 * 0.02562 * 6 4 3 28 28 C 1.38099 * 119.84820 * 0.24410 * 27 6 4 29 29 F 1.35105 * 119.91444 * 179.74847 * 28 27 6 30 30 H 1.08997 * 109.47235 * 89.99398 * 1 2 3 31 31 H 1.08991 * 109.47580 * 209.99676 * 1 2 3 32 32 H 1.09000 * 109.46709 * 330.00042 * 1 2 3 33 33 H 1.08000 * 119.92574 * 0.02983 * 3 2 1 34 34 H 1.08993 * 109.47256 * 92.85861 * 10 9 7 35 35 H 1.09001 * 109.47669 * 212.86211 * 10 9 7 36 36 H 1.09010 * 109.47165 * 332.85924 * 10 9 7 37 37 H 1.09003 * 110.36707 * 273.92323 * 13 11 9 38 38 H 1.09003 * 110.36553 * 36.13176 * 13 11 9 39 39 H 0.97003 * 119.99494 * 179.97438 * 18 17 15 40 40 H 1.09011 * 109.88422 * 120.47085 * 23 14 13 41 41 H 1.09001 * 109.88699 * 241.48194 * 23 14 13 42 42 H 0.96703 * 113.99633 * 66.48054 * 26 24 23 43 43 H 1.08003 * 120.06975 * 179.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1989 0.0000 4 6 3.5777 1.2061 0.0005 5 9 4.2488 2.3786 0.0011 6 6 4.2796 -0.0033 0.0005 7 6 5.7565 -0.0040 0.0005 8 8 6.3647 0.6884 -0.7924 9 7 6.4301 -0.7721 0.8796 10 6 5.7006 -1.6792 1.7689 11 6 7.8919 -0.6998 0.9458 12 1 8.2814 -0.0134 0.1939 13 6 8.3642 -0.2956 2.3646 14 7 9.7308 -0.8372 2.4761 15 6 10.7090 -0.3692 3.3122 16 1 10.5372 0.5206 3.8995 17 6 11.9216 -1.0386 3.4050 18 7 12.1752 -2.0543 2.6072 19 14 13.1932 -0.4980 4.6619 20 1 13.0514 -1.3163 5.8929 21 1 14.5550 -0.6823 4.0992 22 1 12.9840 0.9344 4.9930 23 6 9.8691 -1.9636 1.5413 24 6 8.5257 -2.1081 0.7958 25 1 7.9008 -2.8647 1.2704 26 8 8.7428 -2.4208 -0.5816 27 6 3.5777 -1.2103 -0.0006 28 6 2.1968 -1.2024 -0.0067 29 9 1.5163 -2.3695 -0.0129 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6513 2.1321 0.0005 34 1 5.6326 -2.6641 1.3070 35 1 6.2287 -1.7593 2.7191 36 1 4.6976 -1.2893 1.9425 37 1 8.3768 0.7897 2.4654 38 1 7.7159 -0.7385 3.1207 39 1 13.0227 -2.5219 2.6717 40 1 10.6682 -1.7581 0.8288 41 1 10.0902 -2.8777 2.0923 42 1 9.1375 -3.2910 -0.7298 43 1 4.1137 -2.1480 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047418282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -105.003524 kcal Electronic energy + Delta-G solvation = -30086.607537 eV Core-core repulsion = 25576.338279 eV Total energy + Delta-G solvation = -4510.269258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.30983 -49.15543 -40.46442 -38.91957 -37.74438 -35.31779 -34.88358 -33.43612 -31.84837 -30.63745 -28.92731 -27.94573 -27.41248 -26.59020 -24.49380 -23.53182 -22.82167 -20.92583 -20.45562 -19.31703 -18.11728 -17.66979 -17.44416 -17.09824 -16.98865 -16.40660 -16.13501 -15.78415 -15.62700 -15.09285 -14.75755 -14.62512 -14.55176 -14.10224 -13.91372 -13.79653 -13.62149 -13.24331 -13.14177 -12.86213 -12.68247 -12.55547 -12.43064 -12.24258 -12.06549 -11.81845 -11.66804 -11.48840 -11.26505 -10.88704 -10.83954 -10.18249 -9.99397 -9.95004 -9.84238 -9.45715 -9.33056 -8.91778 -8.74166 -8.45568 -6.94876 -5.80336 -3.15112 0.28669 0.55418 2.46919 2.82379 3.07233 3.36800 3.42307 3.44461 3.71714 3.72673 4.03463 4.19823 4.32574 4.43287 4.61278 4.65603 4.93052 5.01650 5.08364 5.10910 5.17368 5.28972 5.36034 5.41237 5.48338 5.50184 5.56513 5.58489 5.62052 5.68344 5.69772 5.79343 5.99509 6.09203 6.29454 6.42362 6.52556 6.78890 7.32307 7.38410 7.45332 7.70763 8.10710 8.15317 8.15699 9.10764 9.70931 10.33998 11.31359 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.002720 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.520752 B =10291.195882 C =10692.900468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.073 4.073 3 C -0.134 4.134 4 C 0.145 3.855 5 F -0.117 7.117 6 C -0.134 4.134 7 C 0.560 3.440 8 O -0.516 6.516 9 N -0.590 5.590 10 C 0.065 3.935 11 C 0.133 3.867 12 H 0.117 0.883 13 C 0.131 3.869 14 N -0.598 5.598 15 C -0.232 4.232 16 H 0.081 0.919 17 C -0.005 4.005 18 N -0.921 5.921 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.152 3.848 24 C 0.066 3.934 25 H 0.057 0.943 26 O -0.561 6.561 27 C -0.090 4.090 28 C 0.081 3.919 29 F -0.130 7.130 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.027 0.973 39 H 0.254 0.746 40 H 0.057 0.943 41 H 0.052 0.948 42 H 0.374 0.626 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.373 -0.345 -4.026 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.074 4.074 3 C -0.153 4.153 4 C 0.125 3.875 5 F -0.095 7.095 6 C -0.138 4.138 7 C 0.346 3.654 8 O -0.391 6.391 9 N -0.322 5.322 10 C -0.078 4.078 11 C 0.030 3.970 12 H 0.135 0.865 13 C 0.004 3.996 14 N -0.326 5.326 15 C -0.360 4.360 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.568 5.568 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.026 3.974 24 C 0.006 3.994 25 H 0.075 0.925 26 O -0.365 6.365 27 C -0.110 4.110 28 C 0.062 3.938 29 F -0.109 7.109 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.221 0.779 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -24.056 0.567 -4.469 24.474 hybrid contribution 1.008 -0.507 0.787 1.376 sum -23.048 0.060 -3.681 23.340 Atomic orbital electron populations 1.20820 0.89035 1.04049 1.03517 1.19901 0.97580 0.90909 0.99009 1.20849 0.91516 0.99171 1.03765 1.17572 0.89660 0.80729 0.99573 1.91602 1.80389 1.44501 1.92995 1.19852 0.94698 0.92470 1.06806 1.17884 0.85829 0.80402 0.81279 1.90847 1.68856 1.41467 1.37933 1.47621 1.07303 1.40648 1.36605 1.22075 0.97252 0.93284 0.95217 1.22478 0.76526 0.97652 1.00386 0.86508 1.21775 0.88024 0.97931 0.91853 1.44234 1.07346 1.35447 1.45575 1.19082 0.92750 1.07870 1.16249 0.90091 1.24841 0.97968 0.97944 0.99448 1.69947 1.24094 1.23594 1.39148 0.86051 0.80739 0.77963 0.80738 1.21537 1.21662 1.20510 1.21855 0.91266 0.92159 0.92074 1.23529 0.98380 0.95079 0.82406 0.92514 1.86504 1.85197 1.40055 1.24765 1.21256 0.92283 0.98676 0.98764 1.17261 0.89376 0.81422 1.05750 1.91522 1.79696 1.45643 1.93992 0.89997 0.90467 0.90320 0.83001 0.92252 0.89760 0.90779 0.93257 0.95531 0.93601 0.92456 0.92979 0.77913 0.82836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.59 9.82 36.00 0.35 -0.23 16 2 C -0.07 -0.57 5.89 -104.48 -0.62 -1.18 16 3 C -0.13 -1.13 9.66 -39.57 -0.38 -1.52 16 4 C 0.15 1.74 7.25 -38.97 -0.28 1.46 16 5 F -0.12 -1.67 16.50 2.25 0.04 -1.63 16 6 C -0.13 -1.72 4.90 -104.92 -0.51 -2.23 16 7 C 0.56 9.35 7.01 -12.40 -0.09 9.26 16 8 O -0.52 -10.75 16.03 5.30 0.09 -10.67 16 9 N -0.59 -9.33 2.91 -172.65 -0.50 -9.83 16 10 C 0.06 0.75 7.84 59.84 0.47 1.22 16 11 C 0.13 2.57 3.18 -65.78 -0.21 2.36 16 12 H 0.12 2.63 7.01 -51.93 -0.36 2.26 16 13 C 0.13 2.72 6.81 -2.54 -0.02 2.71 16 14 N -0.60 -15.10 3.39 -170.08 -0.58 -15.67 16 15 C -0.23 -6.38 10.27 -15.06 -0.15 -6.53 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 18 N -0.92 -26.53 10.35 55.49 0.57 -25.96 16 19 Si 0.91 21.86 29.56 -169.99 -5.02 16.83 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C 0.15 3.61 5.16 -3.07 -0.02 3.59 16 24 C 0.07 1.26 3.89 -24.90 -0.10 1.16 16 25 H 0.06 0.95 6.99 -51.93 -0.36 0.59 16 26 O -0.56 -10.32 13.39 -35.23 -0.47 -10.79 16 27 C -0.09 -0.92 7.59 -39.12 -0.30 -1.22 16 28 C 0.08 0.73 7.23 -39.49 -0.29 0.45 16 29 F -0.13 -1.18 16.46 2.25 0.04 -1.14 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.38 7.63 -51.93 -0.40 -0.02 16 32 H 0.08 0.28 8.08 -51.93 -0.42 -0.14 16 33 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.06 0.59 7.38 -51.93 -0.38 0.21 16 35 H 0.08 1.00 6.28 -51.93 -0.33 0.67 16 36 H 0.07 0.71 5.68 -51.92 -0.29 0.41 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.03 0.52 6.25 -51.93 -0.32 0.19 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.06 1.55 7.45 -51.92 -0.39 1.16 16 41 H 0.05 1.33 7.36 -51.93 -0.38 0.94 16 42 H 0.37 5.25 9.12 45.56 0.42 5.67 16 43 H 0.15 1.39 6.54 -52.48 -0.34 1.05 16 LS Contribution 358.17 15.07 5.40 5.40 Total: -1.00 -34.04 358.17 -7.06 -41.10 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -4.38 Total: 3.32 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: -2.23 Total: 9.05 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.51 Total: -51.46 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.39 Total: -21.46 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.04 -7.06 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047418282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.903 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds