Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38231 * 119.84850 * 2 1 4 4 C 1.38272 * 120.14526 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.08121 * 180.02562 * 4 3 2 6 6 C 1.39833 * 119.83233 * 0.02562 * 4 3 2 7 7 C 1.47698 * 120.15413 * 179.97438 * 6 4 3 8 8 O 1.21569 * 119.99999 * 311.13625 * 7 6 4 9 9 N 1.34776 * 120.00217 * 131.13773 * 7 6 4 10 10 C 1.46491 * 120.00023 * 4.44733 * 9 7 6 11 11 C 1.46506 * 120.00024 * 184.45200 * 9 7 6 12 12 H 1.09000 * 110.88163 * 357.56671 * 11 9 7 13 13 C 1.54901 * 111.00677 * 121.45022 * 11 9 7 14 14 N 1.47421 * 104.83562 * 155.08049 * 13 11 9 15 15 C 1.36940 * 125.65115 * 155.90379 * 14 13 11 16 16 H 1.07990 * 120.00022 * 354.53409 * 15 14 13 17 17 C 1.38815 * 119.99982 * 174.53159 * 15 14 13 18 18 N 1.31622 * 119.99716 * 5.82494 * 17 15 14 19 19 Si 1.86794 * 120.00016 * 185.82550 * 17 15 14 20 20 H 1.48499 * 109.47125 * 94.99302 * 19 17 15 21 21 H 1.48496 * 109.47379 * 214.99238 * 19 17 15 22 22 H 1.48500 * 109.47092 * 334.99718 * 19 17 15 23 23 C 1.47023 * 108.70090 * 335.87315 * 14 13 11 24 24 C 1.54320 * 107.27358 * 1.05891 * 23 14 13 25 25 H 1.09001 * 110.71850 * 263.83274 * 24 23 14 26 26 O 1.42901 * 110.72498 * 140.55407 * 24 23 14 27 27 C 1.39622 * 119.69327 * 0.02562 * 6 4 3 28 28 C 1.38099 * 119.84820 * 0.24410 * 27 6 4 29 29 F 1.35105 * 119.91444 * 179.74847 * 28 27 6 30 30 H 1.08997 * 109.47235 * 89.99398 * 1 2 3 31 31 H 1.08991 * 109.47580 * 209.99676 * 1 2 3 32 32 H 1.09000 * 109.46709 * 330.00042 * 1 2 3 33 33 H 1.08000 * 119.92574 * 0.02983 * 3 2 1 34 34 H 1.08993 * 109.47256 * 92.85861 * 10 9 7 35 35 H 1.09001 * 109.47669 * 212.86211 * 10 9 7 36 36 H 1.09010 * 109.47165 * 332.85924 * 10 9 7 37 37 H 1.09003 * 110.36707 * 273.92323 * 13 11 9 38 38 H 1.09003 * 110.36553 * 36.13176 * 13 11 9 39 39 H 0.97003 * 119.99494 * 179.97438 * 18 17 15 40 40 H 1.09011 * 109.88422 * 120.47085 * 23 14 13 41 41 H 1.09001 * 109.88699 * 241.48194 * 23 14 13 42 42 H 0.96703 * 113.99633 * 66.48054 * 26 24 23 43 43 H 1.08003 * 120.06975 * 179.97438 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1950 1.1989 0.0000 4 6 3.5777 1.2061 0.0005 5 9 4.2488 2.3786 0.0011 6 6 4.2796 -0.0033 0.0005 7 6 5.7565 -0.0040 0.0005 8 8 6.3647 0.6884 -0.7924 9 7 6.4301 -0.7721 0.8796 10 6 5.7006 -1.6792 1.7689 11 6 7.8919 -0.6998 0.9458 12 1 8.2814 -0.0134 0.1939 13 6 8.3642 -0.2956 2.3646 14 7 9.7308 -0.8372 2.4761 15 6 10.7090 -0.3692 3.3122 16 1 10.5372 0.5206 3.8995 17 6 11.9216 -1.0386 3.4050 18 7 12.1752 -2.0543 2.6072 19 14 13.1932 -0.4980 4.6619 20 1 13.0514 -1.3163 5.8929 21 1 14.5550 -0.6823 4.0992 22 1 12.9840 0.9344 4.9930 23 6 9.8691 -1.9636 1.5413 24 6 8.5257 -2.1081 0.7958 25 1 7.9008 -2.8647 1.2704 26 8 8.7428 -2.4208 -0.5816 27 6 3.5777 -1.2103 -0.0006 28 6 2.1968 -1.2024 -0.0067 29 9 1.5163 -2.3695 -0.0129 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6513 2.1321 0.0005 34 1 5.6326 -2.6641 1.3070 35 1 6.2287 -1.7593 2.7191 36 1 4.6976 -1.2893 1.9425 37 1 8.3768 0.7897 2.4654 38 1 7.7159 -0.7385 3.1207 39 1 13.0227 -2.5219 2.6717 40 1 10.6682 -1.7581 0.8288 41 1 10.0902 -2.8777 2.0923 42 1 9.1375 -3.2910 -0.7298 43 1 4.1137 -2.1480 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047418282.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -129.210335 kcal Electronic energy + Delta-G solvation = -30087.657223 eV Core-core repulsion = 25576.338279 eV Total energy + Delta-G solvation = -4511.318944 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.12124 -50.01124 -41.66719 -40.02837 -39.14666 -36.78256 -36.49302 -34.40411 -33.59190 -31.39990 -30.53415 -29.26457 -28.60429 -27.83067 -26.30859 -24.27092 -23.82894 -22.36508 -22.06368 -20.67299 -19.19653 -19.06817 -18.49326 -18.34528 -18.28169 -17.66506 -17.15499 -17.01196 -16.59085 -16.47036 -16.17897 -15.82324 -15.60776 -15.41020 -15.28974 -14.65309 -14.56214 -14.36552 -14.21672 -14.14704 -14.06822 -13.79464 -13.63247 -13.38231 -13.19795 -13.10888 -12.90172 -12.75284 -12.69395 -12.54877 -12.47634 -12.08551 -11.90492 -11.60359 -11.27213 -10.93814 -10.77688 -10.19357 -9.88889 -9.66825 -8.98102 -7.91128 -5.28666 -0.52544 -0.18677 1.34444 1.45812 1.47332 1.56315 1.64959 2.16905 2.45984 2.91262 2.93333 3.07986 3.22595 3.30656 3.47397 3.53132 3.61769 3.78334 3.90807 3.99530 4.04509 4.15161 4.35486 4.40965 4.44640 4.46343 4.52504 4.57967 4.70666 4.72682 4.79099 4.84743 4.85864 4.96412 5.10570 5.17588 5.34175 5.38735 5.39495 5.59330 5.63077 6.10274 6.15475 6.82572 6.86316 7.01601 7.66070 8.29021 9.18979 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020851 B = 0.002720 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.520752 B =10291.195882 C =10692.900468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.120 4.120 4 C 0.123 3.877 5 F -0.138 7.138 6 C -0.153 4.153 7 C 0.556 3.444 8 O -0.571 6.571 9 N -0.587 5.587 10 C 0.057 3.943 11 C 0.144 3.856 12 H 0.077 0.923 13 C 0.134 3.866 14 N -0.620 5.620 15 C -0.248 4.248 16 H 0.084 0.916 17 C -0.061 4.061 18 N -0.948 5.948 19 Si 0.982 3.018 20 H -0.281 1.281 21 H -0.295 1.295 22 H -0.270 1.270 23 C 0.163 3.837 24 C 0.087 3.913 25 H 0.092 0.908 26 O -0.572 6.572 27 C -0.084 4.084 28 C 0.083 3.917 29 F -0.127 7.127 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.182 0.818 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.039 0.961 38 H 0.055 0.945 39 H 0.250 0.750 40 H 0.014 0.986 41 H 0.031 0.969 42 H 0.394 0.606 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.861 -0.983 -3.110 28.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.139 4.139 4 C 0.103 3.897 5 F -0.117 7.117 6 C -0.157 4.157 7 C 0.345 3.655 8 O -0.451 6.451 9 N -0.317 5.317 10 C -0.084 4.084 11 C 0.039 3.961 12 H 0.095 0.905 13 C 0.008 3.992 14 N -0.348 5.348 15 C -0.377 4.377 16 H 0.102 0.898 17 C -0.254 4.254 18 N -0.596 5.596 19 Si 0.810 3.190 20 H -0.208 1.208 21 H -0.222 1.222 22 H -0.194 1.194 23 C 0.037 3.963 24 C 0.027 3.973 25 H 0.110 0.890 26 O -0.379 6.379 27 C -0.104 4.104 28 C 0.064 3.936 29 F -0.105 7.105 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.199 0.801 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.116 0.884 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.032 0.968 41 H 0.049 0.951 42 H 0.243 0.757 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -27.598 -0.098 -3.533 27.823 hybrid contribution 1.970 -0.317 0.462 2.048 sum -25.628 -0.415 -3.072 25.814 Atomic orbital electron populations 1.20966 0.86516 1.05367 1.04686 1.20269 0.99209 0.89960 0.96354 1.21116 0.89837 1.00788 1.02117 1.17965 0.91009 0.79763 1.01009 1.91546 1.81111 1.45638 1.93393 1.19526 0.92084 0.94007 1.10119 1.18514 0.87538 0.79204 0.80269 1.90808 1.70404 1.43682 1.40177 1.47624 1.05764 1.41226 1.37117 1.22404 0.97896 0.93614 0.94477 1.21967 0.79101 0.96899 0.98161 0.90464 1.21872 0.86532 0.97392 0.93452 1.44498 1.08734 1.36041 1.45518 1.19452 0.93653 1.08080 1.16468 0.89793 1.25690 0.99999 0.98359 1.01370 1.70152 1.24282 1.24675 1.40503 0.85014 0.77676 0.78040 0.78304 1.20805 1.22179 1.19445 1.21616 0.92849 0.90809 0.91011 1.23286 0.95891 0.95808 0.82350 0.89030 1.86475 1.85334 1.41879 1.24214 1.21253 0.92878 0.97957 0.98271 1.17291 0.88961 0.81970 1.05389 1.91539 1.79475 1.45607 1.93920 0.88688 0.89999 0.88260 0.80094 0.89825 0.89679 0.88384 0.94229 0.92729 0.94116 0.96811 0.95051 0.75654 0.81777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 9.82 71.24 0.70 0.06 16 2 C -0.06 -0.67 5.89 -19.78 -0.12 -0.78 16 3 C -0.12 -1.68 9.66 22.28 0.22 -1.46 16 4 C 0.12 2.82 7.25 22.66 0.16 2.99 16 5 F -0.14 -4.03 16.50 44.97 0.74 -3.28 16 6 C -0.15 -3.79 4.90 -20.06 -0.10 -3.89 16 7 C 0.56 18.84 7.01 86.74 0.61 19.44 16 8 O -0.57 -25.09 16.03 -3.93 -0.06 -25.16 16 9 N -0.59 -18.27 2.91 -818.41 -2.38 -20.65 16 10 C 0.06 1.17 7.84 127.77 1.00 2.17 16 11 C 0.14 5.67 3.18 46.38 0.15 5.81 16 12 H 0.08 3.69 7.01 -2.39 -0.02 3.67 16 13 C 0.13 5.62 6.81 86.85 0.59 6.21 16 14 N -0.62 -32.13 3.39 -692.00 -2.35 -34.47 16 15 C -0.25 -13.95 10.27 84.03 0.86 -13.09 16 16 H 0.08 4.53 7.83 -2.92 -0.02 4.51 16 17 C -0.06 -3.44 5.48 84.86 0.47 -2.98 16 18 N -0.95 -56.35 10.35 21.65 0.22 -56.13 16 19 Si 0.98 45.56 29.56 68.60 2.03 47.58 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 C 0.16 8.01 5.16 86.73 0.45 8.45 16 24 C 0.09 3.30 3.89 31.78 0.12 3.43 16 25 H 0.09 2.87 6.99 -2.39 -0.02 2.86 16 26 O -0.57 -21.09 13.39 -148.98 -1.99 -23.09 16 27 C -0.08 -1.51 7.59 22.57 0.17 -1.34 16 28 C 0.08 1.23 7.23 22.33 0.16 1.39 16 29 F -0.13 -1.85 16.46 44.97 0.74 -1.11 16 30 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.08 0.43 7.63 -2.39 -0.02 0.42 16 32 H 0.10 0.19 8.08 -2.39 -0.02 0.17 16 33 H 0.18 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.08 1.35 7.38 -2.39 -0.02 1.34 16 35 H 0.08 1.77 6.28 -2.39 -0.01 1.75 16 36 H 0.10 1.58 5.68 -2.38 -0.01 1.57 16 37 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.06 2.02 6.25 -2.39 -0.01 2.01 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.01 0.78 7.45 -2.38 -0.02 0.76 16 41 H 0.03 1.65 7.36 -2.39 -0.02 1.63 16 42 H 0.39 10.87 9.12 -74.05 -0.68 10.20 16 43 H 0.16 2.50 6.54 -2.91 -0.02 2.48 16 Total: -1.00 -78.59 358.17 2.79 -75.79 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.40 Total: 14.10 kcal Atomic # 6 Polarization: 20.97 SS G_CDS: 5.44 Total: 26.42 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.51 Total: -111.25 kcal Atomic # 8 Polarization: -46.18 SS G_CDS: -2.06 Total: -48.24 kcal Atomic # 9 Polarization: -5.88 SS G_CDS: 1.48 Total: -4.40 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -78.59 2.79 -75.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047418282.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.417 kcal (2) G-P(sol) polarization free energy of solvation -78.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds