Wall clock time and date at job start Sat Apr 11 2020 05:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40362 * 126.64248 * 2 1 4 4 C 1.35134 * 107.11104 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.61239 * 179.74095 * 4 3 2 6 6 F 1.39903 * 109.47312 * 299.99203 * 5 4 3 7 7 F 1.39902 * 109.47793 * 59.99422 * 5 4 3 8 8 O 1.33923 * 108.76938 * 359.97438 * 4 3 2 9 9 C 1.34916 * 109.38281 * 0.02562 * 8 4 3 10 10 C 1.46660 * 125.98409 * 179.97438 * 9 8 4 11 11 O 1.21698 * 119.99508 * 180.02562 * 10 9 8 12 12 N 1.34773 * 120.00476 * 0.02562 * 10 9 8 13 13 C 1.46666 * 125.34127 * 179.97438 * 12 10 9 14 14 C 1.53727 * 107.94490 * 180.54552 * 13 12 10 15 15 H 1.08999 * 112.56428 * 139.72164 * 14 13 12 16 16 C 1.53690 * 109.33947 * 266.25411 * 14 13 12 17 17 N 1.46648 * 108.01091 * 127.55630 * 16 14 13 18 18 C 1.36933 * 125.33061 * 180.81880 * 17 16 14 19 19 H 1.07997 * 119.99777 * 180.02562 * 18 17 16 20 20 C 1.38804 * 120.00243 * 0.02562 * 18 17 16 21 21 N 1.31626 * 120.00073 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00531 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46706 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47383 * 120.00011 * 22 20 18 25 25 H 1.48493 * 109.47449 * 240.00862 * 22 20 18 26 26 C 1.46745 * 109.33784 * 0.83544 * 17 16 14 27 27 C 1.53931 * 106.72280 * 341.65895 * 26 17 16 28 28 H 1.09002 * 113.01552 * 150.83639 * 27 26 17 29 29 C 1.46779 * 125.33647 * 359.69338 * 12 10 9 30 30 H 1.08996 * 109.46907 * 90.02790 * 1 2 3 31 31 H 1.09000 * 109.47342 * 210.02319 * 1 2 3 32 32 H 1.09001 * 109.47121 * 330.02752 * 1 2 3 33 33 H 1.08001 * 126.44519 * 359.94271 * 3 2 1 34 34 H 1.09006 * 109.47290 * 180.02562 * 5 4 3 35 35 H 1.09000 * 109.77504 * 300.16752 * 13 12 10 36 36 H 1.09003 * 109.77146 * 60.92727 * 13 12 10 37 37 H 1.09003 * 109.76480 * 247.19533 * 16 14 13 38 38 H 1.09000 * 109.76427 * 7.91253 * 16 14 13 39 39 H 0.97001 * 120.00250 * 179.97438 * 21 20 18 40 40 H 1.08998 * 110.00861 * 222.34360 * 26 17 16 41 41 H 1.08996 * 110.00786 * 100.97487 * 26 17 16 42 42 H 1.09007 * 110.02980 * 280.77566 * 29 12 10 43 43 H 1.09006 * 110.02824 * 42.19094 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 6 4.8549 1.5357 -0.0047 6 9 4.8595 2.3381 -1.1508 7 9 4.8621 2.3487 1.1338 8 8 3.6005 -0.6647 0.0015 9 6 2.3220 -1.0955 0.0010 10 6 1.8843 -2.4952 0.0011 11 8 0.6968 -2.7614 0.0001 12 7 2.7971 -3.4868 0.0024 13 6 2.4915 -4.9212 0.0032 14 6 3.8231 -5.6892 0.0185 15 1 3.7953 -6.5616 0.6713 16 6 4.2310 -6.0294 -1.4237 17 7 5.6044 -5.5583 -1.6296 18 6 6.3120 -5.6665 -2.7969 19 1 7.3223 -5.2888 -2.8529 20 6 5.7310 -6.2615 -3.9082 21 7 4.4995 -6.7213 -3.8402 22 14 6.6965 -6.4097 -5.5004 23 1 8.0473 -5.8206 -5.3168 24 1 6.8277 -7.8424 -5.8683 25 1 5.9826 -5.6843 -6.5817 26 6 6.1017 -4.9532 -0.3887 27 6 4.8674 -4.6317 0.4730 28 1 5.0744 -4.6634 1.5427 29 6 4.2530 -3.3004 -0.0027 30 1 -0.3633 -0.0005 -1.0276 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 2.0305 2.1595 -0.0009 34 1 5.7405 0.9001 -0.0033 35 1 1.9100 -5.1739 0.8898 36 1 1.9277 -5.1786 -0.8935 37 1 4.1848 -7.1079 -1.5752 38 1 3.5612 -5.5300 -2.1238 39 1 4.0933 -7.1368 -4.6169 40 1 6.6485 -4.0374 -0.6134 41 1 6.7496 -5.6558 0.1353 42 1 4.5960 -3.0671 -1.0108 43 1 4.5290 -2.4976 0.6810 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048874689.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:22 Heat of formation + Delta-G solvation = -82.708959 kcal Electronic energy + Delta-G solvation = -30424.012538 eV Core-core repulsion = 25914.710046 eV Total energy + Delta-G solvation = -4509.302493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -49.45389 -47.45589 -43.05326 -40.13149 -38.30188 -35.22211 -34.29027 -32.42829 -31.81367 -30.42888 -29.53065 -28.03981 -27.09047 -25.58238 -25.34610 -23.27108 -21.84264 -21.31115 -20.16278 -19.64239 -19.39326 -17.87879 -17.83259 -17.56742 -17.37752 -16.79972 -16.63267 -16.07972 -15.33060 -14.74648 -14.47793 -14.33877 -14.27189 -13.80784 -13.74434 -13.67481 -13.44223 -13.29685 -13.18127 -12.99767 -12.91006 -12.71174 -12.34557 -12.11609 -12.00072 -11.56001 -11.53209 -11.51231 -10.93981 -10.87196 -10.52313 -10.17269 -10.12688 -10.07584 -9.99859 -9.91117 -9.69680 -9.03000 -8.66168 -8.43461 -6.89751 -5.77906 -3.11987 0.68601 1.90113 1.96665 2.94881 3.10322 3.36330 3.41894 3.44456 3.53695 3.75764 4.18722 4.44443 4.45554 4.49971 4.52064 4.75751 4.94179 5.02417 5.17768 5.23616 5.34405 5.45393 5.50106 5.57475 5.59240 5.66318 5.71339 5.82175 5.88727 5.90913 6.08495 6.17638 6.20621 6.28492 6.37001 6.49750 6.52170 6.59298 6.73927 7.46277 7.50642 7.55191 7.75706 8.03104 8.20451 9.16127 9.76641 10.39569 11.33638 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011178 B = 0.003582 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.422046 B = 7815.848769 C = 8884.351484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.099 4.099 3 C -0.158 4.158 4 C -0.083 4.083 5 C 0.360 3.640 6 F -0.183 7.183 7 F -0.184 7.184 8 O -0.138 6.138 9 C -0.038 4.038 10 C 0.610 3.390 11 O -0.520 6.520 12 N -0.594 5.594 13 C 0.121 3.879 14 C -0.123 4.123 15 H 0.094 0.906 16 C 0.184 3.816 17 N -0.603 5.603 18 C -0.231 4.231 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.111 4.111 28 H 0.091 0.909 29 C 0.110 3.890 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.161 0.839 34 H 0.136 0.864 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.046 0.954 38 H 0.051 0.949 39 H 0.252 0.748 40 H 0.038 0.962 41 H 0.022 0.978 42 H 0.083 0.917 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 14.134 11.609 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.102 4.102 3 C -0.177 4.177 4 C -0.136 4.136 5 C 0.306 3.694 6 F -0.164 7.164 7 F -0.166 7.166 8 O -0.033 6.033 9 C -0.091 4.091 10 C 0.398 3.602 11 O -0.399 6.399 12 N -0.325 5.325 13 C -0.001 4.001 14 C -0.143 4.143 15 H 0.112 0.888 16 C 0.059 3.941 17 N -0.329 5.329 18 C -0.359 4.359 19 H 0.097 0.903 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.131 4.131 28 H 0.110 0.890 29 C -0.012 4.012 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.087 0.913 33 H 0.179 0.821 34 H 0.153 0.847 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.056 0.944 41 H 0.039 0.961 42 H 0.101 0.899 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.154 13.782 11.378 18.148 hybrid contribution 0.467 0.178 -0.961 1.083 sum -2.686 13.960 10.417 17.624 Atomic orbital electron populations 1.20433 0.87572 1.03727 1.03229 1.20617 0.98015 0.90338 1.01210 1.21549 0.91033 1.00633 1.04534 1.22802 0.97110 0.82692 1.10951 1.19104 0.95363 0.83108 0.71825 1.93080 1.97350 1.75586 1.50349 1.93067 1.97363 1.75110 1.51016 1.84128 1.28876 1.19972 1.70364 1.22114 0.80668 0.95067 1.11261 1.16049 0.84981 0.81049 0.78140 1.90848 1.15106 1.81871 1.52065 1.48158 1.07322 1.06766 1.70257 1.21930 0.97840 0.78134 1.02199 1.23186 0.92404 0.97096 1.01595 0.88798 1.21133 0.86320 0.99042 0.87606 1.44220 1.12188 1.68802 1.07710 1.19070 0.96408 1.33354 0.87093 0.90289 1.24799 0.96580 1.00649 0.98187 1.69960 1.12896 1.44642 1.29267 0.86053 0.78874 0.77408 0.83465 1.20476 1.21693 1.21751 1.21162 0.92962 0.96170 0.87805 1.22956 0.97195 0.93485 0.99426 0.89035 1.22271 0.78497 0.97953 1.02468 0.90530 0.89221 0.91345 0.82092 0.84667 0.91731 0.90307 0.93581 0.93047 0.93706 0.94396 0.96069 0.89889 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.82 36.01 0.35 -0.69 16 2 C -0.10 -1.29 6.20 -104.44 -0.65 -1.94 16 3 C -0.16 -1.80 10.73 -39.89 -0.43 -2.22 16 4 C -0.08 -0.96 6.75 -35.41 -0.24 -1.20 16 5 C 0.36 3.24 5.76 36.01 0.21 3.45 16 6 F -0.18 -1.89 17.32 2.25 0.04 -1.85 16 7 F -0.18 -1.76 17.32 2.25 0.04 -1.73 16 8 O -0.14 -1.87 7.94 5.01 0.04 -1.83 16 9 C -0.04 -0.57 6.92 -36.80 -0.25 -0.82 16 10 C 0.61 10.29 7.81 -12.86 -0.10 10.19 16 11 O -0.52 -9.59 15.05 5.19 0.08 -9.51 16 12 N -0.59 -9.87 3.31 -173.72 -0.58 -10.45 16 13 C 0.12 2.00 6.23 -3.57 -0.02 1.97 16 14 C -0.12 -2.10 4.02 -88.60 -0.36 -2.46 16 15 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 16 C 0.18 4.19 4.75 -3.60 -0.02 4.17 16 17 N -0.60 -14.46 3.37 -171.93 -0.58 -15.04 16 18 C -0.23 -6.18 10.25 -15.06 -0.15 -6.33 16 19 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 20 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 21 N -0.92 -26.36 10.25 55.49 0.57 -25.79 16 22 Si 0.91 21.69 29.55 -169.99 -5.02 16.66 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 C 0.15 2.73 6.37 -3.42 -0.02 2.71 16 27 C -0.11 -1.73 4.19 -88.25 -0.37 -2.10 16 28 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 29 C 0.11 1.73 5.21 -3.29 -0.02 1.71 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 1.14 6.45 -51.93 -0.33 0.80 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.14 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.44 7.44 -51.93 -0.39 1.05 16 37 H 0.05 1.18 7.46 -51.93 -0.39 0.79 16 38 H 0.05 1.33 6.50 -51.93 -0.34 1.00 16 39 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 40 H 0.04 0.69 7.94 -51.93 -0.41 0.27 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 43 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 LS Contribution 357.11 15.07 5.38 5.38 Total: -1.00 -31.14 357.11 -7.72 -38.86 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.52 Total: -0.91 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.16 Total: 6.19 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.59 Total: -51.27 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.12 Total: -11.33 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.08 Total: -3.58 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.14 -7.72 -38.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048874689.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.852 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds