Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.38448 * 119.84675 * 2 1 4 4 C 1.37852 * 120.24364 * 179.76445 * 3 2 1 5 5 C 1.39686 * 119.92158 * 0.48485 * 4 3 2 6 6 C 1.47696 * 120.15272 * 179.76506 * 5 4 3 7 7 O 1.21568 * 120.00033 * 179.72329 * 6 5 4 8 8 N 1.34772 * 120.00194 * 359.73071 * 6 5 4 9 9 C 1.46495 * 120.00136 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46989 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.67986 * 59.83260 * 10 9 8 12 12 C 1.53302 * 109.71028 * 180.36096 * 10 9 8 13 13 O 1.42961 * 109.22076 * 172.04321 * 12 10 9 14 14 C 1.42953 * 114.17193 * 297.42335 * 13 12 10 15 15 C 1.52880 * 109.29885 * 62.44429 * 14 13 12 16 16 N 1.47142 * 108.60869 * 307.93912 * 15 14 13 17 17 C 1.36937 * 120.98319 * 230.49496 * 16 15 14 18 18 H 1.08003 * 119.99898 * 148.74518 * 17 16 15 19 19 C 1.38807 * 120.00284 * 328.74578 * 17 16 15 20 20 N 1.31623 * 119.99876 * 349.33520 * 19 17 16 21 21 Si 1.86799 * 120.00255 * 169.33193 * 19 17 16 22 22 H 1.48507 * 109.46980 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47079 * 299.99954 * 21 19 17 24 24 H 1.48492 * 109.47156 * 60.00256 * 21 19 17 25 25 C 1.39767 * 119.69052 * 359.49645 * 5 4 3 26 26 F 1.35098 * 120.12009 * 180.22857 * 25 5 4 27 27 C 1.38386 * 119.84008 * 179.97438 * 2 1 3 28 28 F 1.35100 * 119.96541 * 0.02562 * 27 2 1 29 29 H 1.09003 * 109.47303 * 270.02873 * 1 2 3 30 30 H 1.09006 * 109.46973 * 30.02605 * 1 2 3 31 31 H 1.08995 * 109.47607 * 150.02031 * 1 2 3 32 32 H 1.07999 * 119.87865 * 0.02562 * 3 2 1 33 33 H 1.07992 * 120.03353 * 180.25365 * 4 3 2 34 34 H 0.97006 * 120.00001 * 359.97438 * 8 6 5 35 35 H 1.09003 * 109.47140 * 60.00314 * 9 8 6 36 36 H 1.09000 * 109.47704 * 299.99981 * 9 8 6 37 37 H 1.09002 * 109.51731 * 291.97015 * 12 10 9 38 38 H 1.08999 * 109.50867 * 52.07213 * 12 10 9 39 39 H 1.09005 * 109.51958 * 182.50747 * 14 13 12 40 40 H 1.08999 * 109.51052 * 302.65554 * 14 13 12 41 41 H 1.08999 * 109.61898 * 188.11799 * 15 14 13 42 42 H 1.08999 * 109.52049 * 67.70295 * 15 14 13 43 43 H 0.96997 * 119.99836 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.2008 0.0000 4 6 3.5744 1.2104 0.0049 5 6 4.2796 0.0046 -0.0004 6 6 5.7565 0.0089 -0.0004 7 8 6.3675 -1.0421 0.0001 8 7 6.4270 1.1780 -0.0008 9 6 7.8920 1.1823 -0.0003 10 6 8.3978 2.6263 -0.0016 11 1 8.0320 3.1441 0.8851 12 6 9.9307 2.6372 -0.0101 13 8 10.3908 3.9776 -0.1981 14 6 10.0053 4.5593 -1.4458 15 6 8.4803 4.6443 -1.5138 16 7 7.9221 3.3171 -1.2106 17 6 6.9914 2.7394 -2.0324 18 1 6.9524 1.6647 -2.1326 19 6 6.0981 3.5348 -2.7366 20 7 6.0015 4.8183 -2.4614 21 14 5.0330 2.7839 -4.0749 22 1 4.1717 3.8366 -4.6710 23 1 5.9010 2.1998 -5.1288 24 1 4.1801 1.7187 -3.4894 25 6 3.5810 -1.2059 0.0001 26 9 4.2542 -2.3772 -0.0003 27 6 2.1955 -1.2004 0.0005 28 9 1.5160 -2.3681 0.0005 29 1 -0.3634 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6515 2.1335 0.0004 33 1 4.1084 2.1490 0.0090 34 1 5.9396 2.0167 -0.0015 35 1 8.2572 0.6690 -0.8899 36 1 8.2566 0.6700 0.8901 37 1 10.3029 2.2544 0.9402 38 1 10.2947 2.0091 -0.8232 39 1 10.4310 5.5593 -1.5284 40 1 10.3695 3.9389 -2.2646 41 1 8.1752 4.9512 -2.5142 42 1 8.1230 5.3688 -0.7820 43 1 5.3775 5.3743 -2.9537 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051133021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = -113.613718 kcal Electronic energy + Delta-G solvation = -30689.910529 eV Core-core repulsion = 26179.267905 eV Total energy + Delta-G solvation = -4510.642624 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.41096 -48.45017 -39.90243 -38.73595 -38.03864 -35.41203 -33.71856 -33.02689 -31.58791 -30.57507 -30.28592 -27.99361 -27.22236 -25.40786 -23.53094 -22.84297 -22.80153 -21.72052 -20.26098 -19.74692 -18.25688 -17.41803 -16.96484 -16.69137 -16.39443 -15.94660 -15.91232 -15.67998 -14.95508 -14.88678 -14.67428 -14.52522 -14.37494 -14.22842 -13.90088 -13.82435 -13.58893 -13.48242 -13.22412 -12.99877 -12.70373 -12.41435 -12.04778 -11.85596 -11.69488 -11.62909 -11.57326 -11.10759 -10.94252 -10.82867 -10.47639 -10.33192 -10.12426 -9.74166 -9.62221 -9.05764 -8.95595 -8.79503 -8.74511 -8.36674 -6.81614 -5.99389 -3.49627 0.55078 0.89813 2.84471 3.22768 3.29326 3.33835 3.36520 3.72130 3.82293 4.26535 4.27627 4.46906 4.51062 4.57662 4.84795 4.91078 5.07792 5.17872 5.20962 5.32241 5.43589 5.52948 5.63933 5.71250 5.79812 5.80671 5.85480 5.96051 5.99697 6.02236 6.10662 6.12678 6.17537 6.28795 6.46381 6.63615 6.67756 6.94357 7.00800 7.42286 7.61845 7.81316 8.02436 8.20461 8.62687 8.97194 9.57248 10.16580 11.06547 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013700 B = 0.004061 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.317700 B = 6894.032243 C = 8097.640732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.073 4.073 3 C -0.112 4.112 4 C -0.053 4.053 5 C -0.142 4.142 6 C 0.551 3.449 7 O -0.543 6.543 8 N -0.684 5.684 9 C 0.135 3.865 10 C 0.125 3.875 11 H 0.043 0.957 12 C 0.056 3.944 13 O -0.392 6.392 14 C 0.034 3.966 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.258 4.258 18 H 0.073 0.927 19 C 0.013 3.987 20 N -0.898 5.898 21 Si 0.891 3.109 22 H -0.288 1.288 23 H -0.282 1.282 24 H -0.278 1.278 25 C 0.127 3.873 26 F -0.106 7.106 27 C 0.046 3.954 28 F -0.128 7.128 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.146 0.854 33 H 0.152 0.848 34 H 0.415 0.585 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.084 0.916 38 H 0.047 0.953 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -3.598 5.834 9.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.074 4.074 3 C -0.130 4.130 4 C -0.072 4.072 5 C -0.146 4.146 6 C 0.336 3.664 7 O -0.423 6.423 8 N -0.336 5.336 9 C 0.011 3.989 10 C 0.018 3.982 11 H 0.060 0.940 12 C -0.023 4.023 13 O -0.310 6.310 14 C -0.043 4.043 15 C 0.018 3.982 16 N -0.317 5.317 17 C -0.388 4.388 18 H 0.090 0.910 19 C -0.187 4.187 20 N -0.541 5.541 21 Si 0.720 3.280 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.204 1.204 25 C 0.106 3.894 26 F -0.084 7.084 27 C 0.026 3.974 28 F -0.106 7.106 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.254 0.746 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.048 0.952 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.158 -4.175 5.885 9.486 hybrid contribution -0.961 -0.408 -1.173 1.570 sum -7.119 -4.582 4.713 9.690 Atomic orbital electron populations 1.20803 0.89266 1.03934 1.03288 1.20002 0.97472 0.91021 0.98918 1.20966 0.93816 0.97458 1.00766 1.21510 0.94340 0.97531 0.93798 1.20060 0.95052 0.92136 1.07394 1.17777 0.85922 0.84612 0.78078 1.90794 1.69214 1.31331 1.50948 1.45890 1.07630 1.08365 1.71724 1.21228 0.79470 0.96830 1.01329 1.21440 0.93336 0.91597 0.91842 0.93954 1.22860 0.94672 0.84212 1.00589 1.87806 1.76086 1.28323 1.38817 1.23280 0.99011 0.96976 0.85071 1.21331 0.87647 0.86882 1.02297 1.44070 1.47135 1.17869 1.22650 1.19204 1.07841 0.91874 1.19840 0.90979 1.25109 0.97409 0.95983 1.00234 1.69971 1.37965 1.04679 1.41530 0.86545 0.80529 0.78375 0.82571 1.21392 1.20866 1.20366 1.17611 0.87882 0.82206 1.01710 1.91602 1.79824 1.44065 1.92896 1.17304 0.87775 0.82434 1.09869 1.91497 1.79353 1.45472 1.94309 0.90118 0.90203 0.90818 0.83610 0.83009 0.74563 0.91171 0.91921 0.89829 0.93439 0.90179 0.94142 0.88953 0.95235 0.93310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.82 36.00 0.35 -0.64 16 2 C -0.07 -0.87 5.89 -104.49 -0.62 -1.48 16 3 C -0.11 -1.33 9.67 -39.65 -0.38 -1.71 16 4 C -0.05 -0.76 9.54 -39.18 -0.37 -1.13 16 5 C -0.14 -2.40 5.88 -104.92 -0.62 -3.02 16 6 C 0.55 10.53 7.77 -12.40 -0.10 10.44 16 7 O -0.54 -11.91 15.34 5.31 0.08 -11.83 16 8 N -0.68 -12.48 3.72 -61.30 -0.23 -12.70 16 9 C 0.14 2.42 4.45 -4.04 -0.02 2.40 16 10 C 0.12 2.32 3.21 -67.42 -0.22 2.10 16 11 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 12 C 0.06 0.95 6.29 37.31 0.23 1.18 16 13 O -0.39 -7.35 10.74 -35.23 -0.38 -7.73 16 14 C 0.03 0.64 6.97 37.10 0.26 0.90 16 15 C 0.14 3.12 5.35 -3.75 -0.02 3.10 16 16 N -0.59 -12.94 3.04 -164.56 -0.50 -13.44 16 17 C -0.26 -6.08 7.07 -15.06 -0.11 -6.19 16 18 H 0.07 1.76 5.80 -52.48 -0.30 1.45 16 19 C 0.01 0.31 5.06 -17.43 -0.09 0.22 16 20 N -0.90 -22.79 11.14 55.49 0.62 -22.17 16 21 Si 0.89 19.96 29.57 -169.99 -5.03 14.93 16 22 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.13 2.15 7.29 -38.89 -0.28 1.87 16 26 F -0.11 -1.99 15.46 2.25 0.03 -1.96 16 27 C 0.05 0.67 7.24 -39.41 -0.29 0.39 16 28 F -0.13 -1.83 16.37 2.25 0.04 -1.79 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.63 7.62 -51.93 -0.40 0.24 16 32 H 0.15 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.15 2.13 6.40 -52.49 -0.34 1.79 16 34 H 0.41 7.57 5.36 -40.82 -0.22 7.35 16 35 H 0.07 1.37 7.56 -51.93 -0.39 0.98 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 2.21 6.33 -51.93 -0.33 1.89 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 LS Contribution 356.85 15.07 5.38 5.38 Total: -1.00 -28.78 356.85 -7.58 -36.35 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.34 Total: 6.55 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: -2.26 Total: 8.42 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.11 Total: -48.32 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.30 Total: -19.56 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.07 Total: -3.75 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.03 Total: 14.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.78 -7.58 -36.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051133021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.259 kcal (2) G-P(sol) polarization free energy of solvation -28.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds