Wall clock time and date at job start Sat Apr 11 2020 05:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40368 * 126.64218 * 2 1 4 4 C 1.35130 * 107.11097 * 180.15103 * 3 2 1 5 5 C 1.50706 * 125.61720 * 179.84962 * 4 3 2 6 6 F 1.39900 * 109.46958 * 299.72215 * 5 4 3 7 7 F 1.39898 * 109.46985 * 59.71877 * 5 4 3 8 8 O 1.33936 * 108.76937 * 359.58894 * 4 3 2 9 9 C 1.34905 * 109.38363 * 0.26073 * 8 4 3 10 10 C 1.46660 * 125.99089 * 179.97438 * 9 8 4 11 11 O 1.21695 * 120.00346 * 180.02562 * 10 9 8 12 12 N 1.34772 * 119.99512 * 0.02562 * 10 9 8 13 13 C 1.47391 * 135.85643 * 359.63293 * 12 10 9 14 14 C 1.52069 * 87.41107 * 154.38680 * 13 12 10 15 15 C 1.47395 * 135.85283 * 179.97438 * 12 10 9 16 16 C 1.53514 * 117.21321 * 267.27906 * 14 13 12 17 17 C 1.54635 * 102.70282 * 262.92990 * 16 14 13 18 18 N 1.47147 * 107.38004 * 339.38643 * 17 16 14 19 19 C 1.36934 * 125.57823 * 179.04173 * 18 17 16 20 20 H 1.08004 * 119.99713 * 180.02562 * 19 18 17 21 21 C 1.38809 * 120.00315 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00008 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99948 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47006 * 90.00171 * 23 21 19 25 25 H 1.48496 * 109.47179 * 209.99927 * 23 21 19 26 26 H 1.48502 * 109.47297 * 330.00103 * 23 21 19 27 27 C 1.47756 * 108.83598 * 359.08747 * 18 17 16 28 28 H 1.08999 * 109.47084 * 270.29911 * 1 2 3 29 29 H 1.08999 * 109.47427 * 30.30181 * 1 2 3 30 30 H 1.08999 * 109.46747 * 150.30033 * 1 2 3 31 31 H 1.07993 * 126.44579 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47411 * 179.71966 * 5 4 3 33 33 H 1.08997 * 113.54584 * 269.00000 * 13 12 10 34 34 H 1.08999 * 113.54402 * 39.67560 * 13 12 10 35 35 H 1.09001 * 113.54257 * 320.33137 * 15 12 10 36 36 H 1.09000 * 113.54213 * 90.93652 * 15 12 10 37 37 H 1.09007 * 110.76420 * 21.22976 * 16 14 13 38 38 H 1.09000 * 110.76621 * 144.62741 * 16 14 13 39 39 H 1.09001 * 109.86290 * 98.83420 * 17 16 14 40 40 H 1.09001 * 109.86292 * 219.92934 * 17 16 14 41 41 H 0.97002 * 120.00056 * 179.97438 * 22 21 19 42 42 H 1.09003 * 110.40070 * 263.50268 * 27 18 17 43 43 H 1.08994 * 110.40399 * 141.08313 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1263 0.0000 4 6 3.6183 0.6745 -0.0034 5 6 4.8550 1.5357 -0.0079 6 9 4.8605 2.3378 -1.1541 7 9 4.8610 2.3490 1.1304 8 8 3.6005 -0.6647 0.0036 9 6 2.3221 -1.0955 0.0058 10 6 1.8843 -2.4952 0.0126 11 8 0.6968 -2.7614 0.0136 12 7 2.7972 -3.4867 0.0178 13 6 4.2688 -3.5695 0.0122 14 6 4.1261 -4.9272 0.6822 15 6 2.7583 -4.9601 0.0256 16 6 4.1633 -4.9602 2.2165 17 6 5.6358 -5.3276 2.5131 18 7 6.1856 -5.9534 1.3002 19 6 7.4695 -6.4045 1.1484 20 1 7.7783 -6.8507 0.2145 21 6 8.3743 -6.2884 2.1947 22 7 7.9979 -5.7451 3.3329 23 14 10.1256 -6.9045 1.9878 24 1 10.9766 -5.8085 1.4586 25 1 10.6525 -7.3493 3.3029 26 1 10.1400 -8.0453 1.0372 27 6 5.1257 -6.0143 0.2725 28 1 -0.3633 0.0054 1.0276 29 1 -0.3634 0.8872 -0.5185 30 1 -0.3633 -0.8927 -0.5092 31 1 2.0306 2.1595 0.0004 32 1 5.7404 0.9001 -0.0049 33 1 4.6981 -3.6207 -0.9884 34 1 4.7495 -2.8202 0.6411 35 1 1.9779 -5.3717 0.6657 36 1 2.7632 -5.4010 -0.9712 37 1 3.9183 -3.9819 2.6301 38 1 3.4890 -5.7244 2.6030 39 1 6.2009 -4.4272 2.7540 40 1 5.6818 -6.0297 3.3457 41 1 8.6301 -5.6643 4.0642 42 1 4.6463 -6.9932 0.2786 43 1 5.5389 -5.7988 -0.7128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072830012.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:41 Heat of formation + Delta-G solvation = -64.054717 kcal Electronic energy + Delta-G solvation = -29902.351807 eV Core-core repulsion = 25393.858222 eV Total energy + Delta-G solvation = -4508.493584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.22842 -48.23332 -44.02673 -41.92056 -39.67598 -37.39970 -35.38622 -34.11676 -32.81803 -31.35045 -30.44399 -28.90979 -28.13958 -27.28170 -26.84561 -25.37768 -22.86935 -22.43821 -22.11781 -20.73165 -19.84231 -18.91157 -18.64390 -18.59286 -18.35071 -18.26108 -17.55036 -17.34574 -16.72470 -16.52478 -16.09801 -15.67378 -15.27957 -15.11863 -14.93764 -14.60199 -14.58688 -14.35287 -14.20992 -14.11144 -14.06890 -13.80759 -13.72426 -13.71344 -13.34847 -13.19340 -12.86322 -12.76937 -12.33977 -12.28900 -12.02379 -11.97423 -11.84857 -11.71058 -11.26682 -11.17558 -10.94981 -10.66182 -10.15982 -9.73871 -8.84731 -7.80470 -5.15269 -0.36833 0.93444 1.00873 1.50203 1.50998 1.58879 1.59735 1.89464 2.53142 2.63547 2.95468 3.17392 3.33525 3.43669 3.52651 3.53713 3.62425 3.76648 3.78219 3.99971 4.11188 4.18881 4.22388 4.29210 4.44835 4.50545 4.59814 4.67401 4.69406 4.72810 4.82951 4.85959 4.90603 4.97267 5.01078 5.14959 5.19661 5.27249 5.51537 5.56334 5.67799 5.80286 6.23055 6.40360 6.78080 7.14360 7.81984 8.46007 9.29939 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011502 B = 0.003262 C = 0.002698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2433.820324 B = 8581.177592 C =10374.473401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.095 4.095 3 C -0.162 4.162 4 C -0.079 4.079 5 C 0.363 3.637 6 F -0.186 7.186 7 F -0.188 7.188 8 O -0.148 6.148 9 C -0.073 4.073 10 C 0.624 3.376 11 O -0.544 6.544 12 N -0.635 5.635 13 C 0.127 3.873 14 C -0.100 4.100 15 C 0.132 3.868 16 C -0.103 4.103 17 C 0.191 3.809 18 N -0.626 5.626 19 C -0.235 4.235 20 H 0.087 0.913 21 C -0.066 4.066 22 N -0.953 5.953 23 Si 0.974 3.026 24 H -0.287 1.287 25 H -0.300 1.300 26 H -0.268 1.268 27 C 0.153 3.847 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.187 0.813 32 H 0.164 0.836 33 H 0.109 0.891 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.117 0.883 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.011 0.989 40 H 0.005 0.995 41 H 0.244 0.756 42 H 0.039 0.961 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 13.487 -9.233 20.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.181 4.181 4 C -0.132 4.132 5 C 0.309 3.691 6 F -0.167 7.167 7 F -0.169 7.169 8 O -0.044 6.044 9 C -0.125 4.125 10 C 0.414 3.586 11 O -0.425 6.425 12 N -0.367 5.367 13 C 0.005 3.995 14 C -0.101 4.101 15 C 0.010 3.990 16 C -0.141 4.141 17 C 0.065 3.935 18 N -0.352 5.352 19 C -0.364 4.364 20 H 0.105 0.895 21 C -0.259 4.259 22 N -0.602 5.602 23 Si 0.803 3.197 24 H -0.214 1.214 25 H -0.227 1.227 26 H -0.193 1.193 27 C 0.028 3.972 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.204 0.796 32 H 0.181 0.819 33 H 0.127 0.873 34 H 0.091 0.909 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.029 0.971 40 H 0.023 0.977 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.268 13.314 -9.129 20.276 hybrid contribution 1.127 -0.077 0.491 1.232 sum -11.141 13.237 -8.638 19.338 Atomic orbital electron populations 1.20478 0.86392 1.04278 1.03641 1.21003 0.98952 0.90330 0.99482 1.21891 0.90597 1.01511 1.04114 1.23334 0.98373 0.82051 1.09415 1.19348 0.95432 0.82934 0.71392 1.93065 1.97329 1.75765 1.50541 1.93067 1.97327 1.75190 1.51353 1.84021 1.28625 1.21075 1.70720 1.21982 0.81448 0.94769 1.14305 1.16030 0.84300 0.81284 0.76945 1.90830 1.15758 1.82337 1.53583 1.49707 1.08571 1.07889 1.70551 1.22983 0.78678 0.96163 1.01709 1.22005 0.95927 0.96078 0.96129 1.22906 0.95843 0.77829 1.02390 1.22273 0.97249 1.01224 0.93370 1.20900 0.89291 0.94838 0.88436 1.44821 1.07807 1.70936 1.11639 1.19468 0.86214 1.31894 0.98827 0.89474 1.25588 1.02119 1.02153 0.96046 1.70184 1.34684 1.51035 1.04300 0.85138 0.80102 0.78089 0.76371 1.21355 1.22676 1.19286 1.21303 0.87952 0.95388 0.92577 0.89996 0.88644 0.90848 0.79565 0.81896 0.87306 0.90855 0.89363 0.86470 0.91668 0.90381 0.97112 0.97658 0.94638 0.94299 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 9.82 71.24 0.70 -1.04 16 2 C -0.09 -2.18 6.20 -19.74 -0.12 -2.30 16 3 C -0.16 -3.19 10.73 22.07 0.24 -2.95 16 4 C -0.08 -1.65 6.75 24.97 0.17 -1.48 16 5 C 0.36 5.91 5.76 71.24 0.41 6.32 16 6 F -0.19 -3.27 17.32 44.97 0.78 -2.49 16 7 F -0.19 -3.56 17.32 44.97 0.78 -2.78 16 8 O -0.15 -3.74 9.28 -4.99 -0.05 -3.79 16 9 C -0.07 -1.96 7.09 24.08 0.17 -1.79 16 10 C 0.62 18.46 8.03 86.44 0.69 19.15 16 11 O -0.54 -17.97 15.51 -4.33 -0.07 -18.04 16 12 N -0.63 -17.26 3.70 -864.77 -3.20 -20.45 16 13 C 0.13 3.44 7.15 83.76 0.60 4.03 16 14 C -0.10 -2.94 1.06 -52.63 -0.06 -2.99 16 15 C 0.13 3.16 8.02 83.66 0.67 3.83 16 16 C -0.10 -3.58 6.40 31.32 0.20 -3.38 16 17 C 0.19 8.99 5.39 86.81 0.47 9.45 16 18 N -0.63 -29.77 3.41 -693.44 -2.36 -32.13 16 19 C -0.24 -12.42 10.28 84.03 0.86 -11.55 16 20 H 0.09 4.33 7.83 -2.91 -0.02 4.31 16 21 C -0.07 -3.64 5.49 84.86 0.47 -3.18 16 22 N -0.95 -55.99 10.30 21.65 0.22 -55.77 16 23 Si 0.97 44.34 29.55 68.60 2.03 46.36 16 24 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 25 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 27 C 0.15 5.33 6.70 86.23 0.58 5.91 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.66 6.44 -2.39 -0.02 1.64 16 31 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.16 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.11 2.57 8.06 -2.39 -0.02 2.55 16 34 H 0.07 2.18 7.56 -2.39 -0.02 2.16 16 35 H 0.09 2.07 8.13 -2.39 -0.02 2.05 16 36 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.06 2.20 8.07 -2.38 -0.02 2.18 16 38 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 39 H 0.01 0.57 7.38 -2.39 -0.02 0.55 16 40 H 0.01 0.28 7.49 -2.39 -0.02 0.26 16 41 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 Total: -1.00 -68.41 366.77 5.22 -63.19 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 1.04 Total: 7.85 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 6.05 Total: 18.05 kcal Atomic # 7 Polarization: -103.02 SS G_CDS: -5.34 Total: -108.35 kcal Atomic # 8 Polarization: -21.71 SS G_CDS: -0.11 Total: -21.83 kcal Atomic # 9 Polarization: -6.82 SS G_CDS: 1.56 Total: -5.27 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.36 kcal Total: -68.41 5.22 -63.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072830012.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.867 kcal (2) G-P(sol) polarization free energy of solvation -68.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds