Wall clock time and date at job start Sat Apr 11 2020 05:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30450 * 125.98245 * 2 1 4 4 N 1.39939 * 108.89568 * 180.16193 * 3 2 1 5 5 H 0.97001 * 125.75870 * 179.81590 * 4 3 2 6 6 C 1.34266 * 108.48792 * 359.54124 * 4 3 2 7 7 C 1.38045 * 107.41872 * 0.27176 * 6 4 3 8 8 C 1.47425 * 126.41389 * 180.02562 * 7 6 4 9 9 O 1.21609 * 119.99701 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00093 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99823 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47575 * 324.99791 * 11 10 8 13 13 C 1.53005 * 109.47204 * 85.00298 * 11 10 8 14 14 C 1.53005 * 109.46989 * 204.99800 * 11 10 8 15 15 C 1.52998 * 109.46909 * 64.99931 * 14 11 10 16 16 N 1.46498 * 109.47274 * 180.02562 * 15 14 11 17 17 C 1.34779 * 120.00343 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00008 * 179.97438 * 17 16 15 20 20 S 1.81000 * 109.47041 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99966 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00032 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99589 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00471 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99546 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47248 * 60.00240 * 25 23 21 27 27 H 1.48500 * 109.46969 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47170 * 300.00188 * 25 23 21 29 29 H 1.08997 * 109.47206 * 270.32882 * 1 2 3 30 30 H 1.08997 * 109.47263 * 30.33876 * 1 2 3 31 31 H 1.09005 * 109.47027 * 150.33487 * 1 2 3 32 32 H 1.08002 * 126.29040 * 180.25994 * 6 4 3 33 33 H 0.97003 * 119.99847 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47269 * 59.99305 * 13 11 10 35 35 H 1.08998 * 109.46881 * 179.97438 * 13 11 10 36 36 H 1.09006 * 109.46689 * 299.99808 * 13 11 10 37 37 H 1.08997 * 109.47372 * 184.99977 * 14 11 10 38 38 H 1.09001 * 109.47192 * 305.00508 * 14 11 10 39 39 H 1.08997 * 109.47141 * 300.00187 * 15 14 11 40 40 H 1.09010 * 109.47161 * 59.99897 * 15 14 11 41 41 H 0.96998 * 119.99696 * 359.97438 * 16 15 14 42 42 H 1.08997 * 109.47492 * 299.99802 * 19 17 16 43 43 H 1.09006 * 109.46726 * 59.99962 * 19 17 16 44 44 H 0.97001 * 120.00353 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6110 0.6444 -0.0037 5 1 4.3841 1.2303 -0.0071 6 6 3.6439 -0.6978 0.0041 7 6 2.3373 -1.1432 0.0066 8 6 1.8917 -2.5484 0.0154 9 8 0.7040 -2.8097 0.0163 10 7 2.8006 -3.5436 0.0224 11 6 2.3577 -4.9400 0.0305 12 1 1.4449 -5.0283 0.6196 13 6 2.0852 -5.3970 -1.4040 14 6 3.4492 -5.8176 0.6466 15 6 3.6344 -5.4431 2.1184 16 7 4.6799 -6.2829 2.7083 17 6 5.0158 -6.1299 4.0045 18 8 4.4529 -5.2967 4.6825 19 6 6.0909 -6.9943 4.6113 20 16 6.3101 -6.5511 6.3525 21 6 7.5863 -7.6815 6.7976 22 1 7.9822 -8.3659 6.0619 23 6 8.0836 -7.6914 8.0934 24 7 7.6015 -6.8569 8.9899 25 14 9.4372 -8.8893 8.5651 26 1 10.6347 -8.6397 7.7232 27 1 9.7890 -8.7005 9.9954 28 1 8.9635 -10.2805 8.3518 29 1 -0.3633 0.0059 1.0276 30 1 -0.3633 0.8869 -0.5191 31 1 -0.3633 -0.8930 -0.5086 32 1 4.5298 -1.3155 0.0077 33 1 3.7480 -3.3351 0.0213 34 1 2.9981 -5.3086 -1.9931 35 1 1.7562 -6.4361 -1.3980 36 1 1.3076 -4.7717 -1.8430 37 1 3.1582 -6.8653 0.5722 38 1 4.3859 -5.6617 0.1115 39 1 3.9254 -4.3953 2.1929 40 1 2.6976 -5.5988 2.6537 41 1 5.1298 -6.9495 2.1660 42 1 5.8000 -8.0420 4.5366 43 1 7.0277 -6.8381 4.0763 44 1 7.9488 -6.8641 9.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075679396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:51 Heat of formation + Delta-G solvation = -17.486325 kcal Electronic energy + Delta-G solvation = -25893.809337 eV Core-core repulsion = 21973.468247 eV Total energy + Delta-G solvation = -3920.341090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.77637 -39.76437 -39.08714 -36.74412 -34.46593 -33.29240 -32.44959 -32.33256 -30.49526 -29.78075 -28.23464 -28.13915 -25.51251 -24.15490 -23.19037 -21.68263 -20.71053 -20.36719 -20.01826 -18.77944 -17.85283 -16.92504 -16.49949 -16.16196 -15.95457 -15.64991 -15.34106 -14.82442 -14.80625 -14.56715 -14.16570 -14.05121 -13.95237 -13.71490 -13.24045 -13.19523 -13.07019 -12.86914 -12.59403 -12.41207 -12.27099 -12.18452 -11.64353 -11.54129 -11.31364 -11.23725 -11.06643 -11.05627 -10.78584 -10.05460 -9.88225 -9.84619 -9.49185 -9.38838 -9.13094 -9.08306 -8.91163 -8.26079 -6.52349 -6.23348 -3.94329 1.10940 1.83037 2.29777 2.93509 3.00096 3.07480 3.20087 3.21664 3.25859 3.29022 3.66712 4.12294 4.18603 4.21820 4.45426 4.53893 4.72271 4.79172 4.93964 5.04630 5.07909 5.10353 5.11632 5.21772 5.30235 5.39578 5.46534 5.56173 5.60105 5.62876 5.70369 5.77050 5.86702 5.87017 5.93403 6.10746 6.16344 6.24228 6.57319 6.67536 7.10665 7.30408 7.57143 7.67023 8.05365 8.32970 8.58823 9.21658 10.83966 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.001910 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.991554 B =14653.426361 C =15691.600129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.136 3.864 3 N -0.300 5.300 4 N -0.460 5.460 5 H 0.445 0.555 6 C 0.108 3.892 7 C -0.290 4.290 8 C 0.598 3.402 9 O -0.539 6.539 10 N -0.726 5.726 11 C 0.148 3.852 12 H 0.095 0.905 13 C -0.162 4.162 14 C -0.139 4.139 15 C 0.121 3.879 16 N -0.741 5.741 17 C 0.530 3.470 18 O -0.516 6.516 19 C -0.153 4.153 20 S -0.061 6.061 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.186 0.814 33 H 0.396 0.604 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.398 0.602 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 8.252 -25.585 27.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.032 4.032 3 N -0.123 5.123 4 N -0.163 5.163 5 H 0.290 0.710 6 C -0.045 4.045 7 C -0.305 4.305 8 C 0.385 3.615 9 O -0.416 6.416 10 N -0.377 5.377 11 C 0.043 3.957 12 H 0.113 0.887 13 C -0.220 4.220 14 C -0.178 4.178 15 C -0.003 4.003 16 N -0.395 5.395 17 C 0.316 3.684 18 O -0.390 6.390 19 C -0.304 4.304 20 S 0.166 5.834 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.203 0.797 33 H 0.230 0.770 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.562 10.798 -24.246 28.212 hybrid contribution 2.947 -2.545 -0.689 3.954 sum -6.615 8.254 -24.935 27.086 Atomic orbital electron populations 1.20370 0.85535 1.04071 1.03823 1.22523 0.97478 0.88634 0.94591 1.77211 0.86196 1.22438 1.26493 1.46128 1.07960 1.05493 1.56767 0.71021 1.23177 0.99000 0.85824 0.96532 1.20287 0.92129 0.94607 1.23470 1.17197 0.85589 0.83448 0.75232 1.90750 1.16236 1.84196 1.50426 1.45930 1.09459 1.05871 1.76487 1.20871 0.98177 0.79647 0.97013 0.88726 1.22166 1.02146 1.01774 0.95928 1.22131 0.99448 1.00912 0.95282 1.21263 0.91833 0.95188 0.92059 1.46009 1.40956 1.40866 1.11715 1.20323 0.83343 0.83699 0.81023 1.90715 1.53073 1.34833 1.60402 1.23531 0.99090 1.01892 1.05893 1.85422 1.49836 1.50434 0.97709 1.22823 1.23407 1.23156 0.99086 0.90974 1.24998 0.97130 0.96149 0.95325 1.70006 1.41129 1.35272 1.03852 0.86222 0.81038 0.80637 0.77588 1.19954 1.20808 1.19924 0.89966 0.91018 0.88537 0.79741 0.76967 0.92482 0.91452 0.91794 0.89399 0.90629 0.91674 0.91477 0.76872 0.89218 0.89282 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 9.92 36.00 0.36 -0.36 16 2 C 0.14 1.42 7.26 -82.02 -0.60 0.83 16 3 N -0.30 -3.07 12.63 33.89 0.43 -2.65 16 4 N -0.46 -3.09 7.29 30.85 0.22 -2.86 16 5 H 0.44 1.47 8.96 -182.72 -1.64 -0.17 16 6 C 0.11 0.67 11.52 -16.56 -0.19 0.48 16 7 C -0.29 -2.72 6.13 -105.07 -0.64 -3.36 16 8 C 0.60 6.10 7.78 -12.52 -0.10 6.00 16 9 O -0.54 -7.12 14.58 5.27 0.08 -7.05 16 10 N -0.73 -5.26 4.52 -54.88 -0.25 -5.51 16 11 C 0.15 1.06 2.57 -67.93 -0.17 0.89 16 12 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 13 C -0.16 -1.01 9.48 37.16 0.35 -0.66 16 14 C -0.14 -0.86 4.87 -26.73 -0.13 -0.99 16 15 C 0.12 1.25 5.56 -4.04 -0.02 1.23 16 16 N -0.74 -8.95 5.56 -60.29 -0.33 -9.29 16 17 C 0.53 9.55 7.85 -10.98 -0.09 9.47 16 18 O -0.52 -11.61 15.86 5.56 0.09 -11.52 16 19 C -0.15 -3.00 6.16 36.01 0.22 -2.78 16 20 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 21 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 22 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 23 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 24 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 25 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.94 6.55 -51.93 -0.34 0.60 16 32 H 0.19 0.37 7.46 -52.49 -0.39 -0.02 16 33 H 0.40 1.90 7.53 -40.82 -0.31 1.59 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.40 3.51 8.47 -40.82 -0.35 3.16 16 42 H 0.09 1.62 8.14 -51.92 -0.42 1.19 16 43 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 44 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 391.03 15.07 5.89 5.89 Total: -1.00 -39.11 391.03 -8.78 -47.88 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.59 Total: 0.19 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.81 Total: -2.11 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: 0.80 Total: -45.60 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.16 Total: -18.57 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.11 -8.78 -47.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.396 kcal (2) G-P(sol) polarization free energy of solvation -39.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds