Wall clock time and date at job start Sat Apr 11 2020 05:57:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30450 * 125.98245 * 2 1 4 4 N 1.39939 * 108.89568 * 180.16193 * 3 2 1 5 5 H 0.97001 * 125.75870 * 179.81590 * 4 3 2 6 6 C 1.34266 * 108.48792 * 359.54124 * 4 3 2 7 7 C 1.38045 * 107.41872 * 0.27176 * 6 4 3 8 8 C 1.47425 * 126.41389 * 180.02562 * 7 6 4 9 9 O 1.21609 * 119.99701 * 180.02562 * 8 7 6 10 10 N 1.34777 * 120.00093 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99823 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.47575 * 324.99791 * 11 10 8 13 13 C 1.53005 * 109.47204 * 85.00298 * 11 10 8 14 14 C 1.53005 * 109.46989 * 204.99800 * 11 10 8 15 15 C 1.52998 * 109.46909 * 64.99931 * 14 11 10 16 16 N 1.46498 * 109.47274 * 180.02562 * 15 14 11 17 17 C 1.34779 * 120.00343 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99557 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00008 * 179.97438 * 17 16 15 20 20 S 1.81000 * 109.47041 * 179.97438 * 19 17 16 21 21 C 1.76198 * 99.99966 * 180.02562 * 20 19 17 22 22 H 1.07995 * 120.00032 * 0.02562 * 21 20 19 23 23 C 1.38801 * 119.99589 * 179.97438 * 21 20 19 24 24 N 1.31628 * 120.00471 * 0.02562 * 23 21 20 25 25 Si 1.86807 * 119.99546 * 180.02562 * 23 21 20 26 26 H 1.48492 * 109.47248 * 60.00240 * 25 23 21 27 27 H 1.48500 * 109.46969 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.47170 * 300.00188 * 25 23 21 29 29 H 1.08997 * 109.47206 * 270.32882 * 1 2 3 30 30 H 1.08997 * 109.47263 * 30.33876 * 1 2 3 31 31 H 1.09005 * 109.47027 * 150.33487 * 1 2 3 32 32 H 1.08002 * 126.29040 * 180.25994 * 6 4 3 33 33 H 0.97003 * 119.99847 * 359.97438 * 10 8 7 34 34 H 1.08999 * 109.47269 * 59.99305 * 13 11 10 35 35 H 1.08998 * 109.46881 * 179.97438 * 13 11 10 36 36 H 1.09006 * 109.46689 * 299.99808 * 13 11 10 37 37 H 1.08997 * 109.47372 * 184.99977 * 14 11 10 38 38 H 1.09001 * 109.47192 * 305.00508 * 14 11 10 39 39 H 1.08997 * 109.47141 * 300.00187 * 15 14 11 40 40 H 1.09010 * 109.47161 * 59.99897 * 15 14 11 41 41 H 0.96998 * 119.99696 * 359.97438 * 16 15 14 42 42 H 1.08997 * 109.47492 * 299.99802 * 19 17 16 43 43 H 1.09006 * 109.46726 * 59.99962 * 19 17 16 44 44 H 0.97001 * 120.00353 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2734 1.0556 0.0000 4 7 3.6110 0.6444 -0.0037 5 1 4.3841 1.2303 -0.0071 6 6 3.6439 -0.6978 0.0041 7 6 2.3373 -1.1432 0.0066 8 6 1.8917 -2.5484 0.0154 9 8 0.7040 -2.8097 0.0163 10 7 2.8006 -3.5436 0.0224 11 6 2.3577 -4.9400 0.0305 12 1 1.4449 -5.0283 0.6196 13 6 2.0852 -5.3970 -1.4040 14 6 3.4492 -5.8176 0.6466 15 6 3.6344 -5.4431 2.1184 16 7 4.6799 -6.2829 2.7083 17 6 5.0158 -6.1299 4.0045 18 8 4.4529 -5.2967 4.6825 19 6 6.0909 -6.9943 4.6113 20 16 6.3101 -6.5511 6.3525 21 6 7.5863 -7.6815 6.7976 22 1 7.9822 -8.3659 6.0619 23 6 8.0836 -7.6914 8.0934 24 7 7.6015 -6.8569 8.9899 25 14 9.4372 -8.8893 8.5651 26 1 10.6347 -8.6397 7.7232 27 1 9.7890 -8.7005 9.9954 28 1 8.9635 -10.2805 8.3518 29 1 -0.3633 0.0059 1.0276 30 1 -0.3633 0.8869 -0.5191 31 1 -0.3633 -0.8930 -0.5086 32 1 4.5298 -1.3155 0.0077 33 1 3.7480 -3.3351 0.0213 34 1 2.9981 -5.3086 -1.9931 35 1 1.7562 -6.4361 -1.3980 36 1 1.3076 -4.7717 -1.8430 37 1 3.1582 -6.8653 0.5722 38 1 4.3859 -5.6617 0.1115 39 1 3.9254 -4.3953 2.1929 40 1 2.6976 -5.5988 2.6537 41 1 5.1298 -6.9495 2.1660 42 1 5.8000 -8.0420 4.5366 43 1 7.0277 -6.8381 4.0763 44 1 7.9488 -6.8641 9.8956 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075679396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:50 Heat of formation + Delta-G solvation = -48.633066 kcal Electronic energy + Delta-G solvation = -25895.159961 eV Core-core repulsion = 21973.468247 eV Total energy + Delta-G solvation = -3921.691714 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.40850 -40.70551 -40.22335 -37.56264 -35.54965 -34.57173 -33.95565 -33.10963 -31.57196 -30.58274 -29.15147 -28.91552 -27.63659 -24.86797 -23.95009 -22.34241 -21.72417 -21.28498 -20.73734 -19.83901 -19.33328 -17.78661 -17.59936 -17.24052 -16.93300 -16.86547 -16.55148 -16.33227 -15.80174 -15.46136 -15.27380 -15.03108 -14.86393 -14.68079 -14.43682 -14.35514 -13.90921 -13.75512 -13.52890 -13.49630 -13.15670 -13.02889 -12.86329 -12.85559 -12.64734 -12.37558 -12.33747 -11.99765 -11.84684 -11.72388 -11.11720 -10.94148 -10.82237 -10.54797 -10.25607 -10.18007 -10.05330 -9.73051 -8.65633 -8.33321 -6.11526 0.55005 1.08623 1.28659 1.44901 1.48638 1.58071 1.64761 1.80336 2.27436 2.31807 2.33401 2.48244 3.00726 3.33857 3.49815 3.75728 3.80347 3.87369 4.09676 4.12322 4.22285 4.32575 4.34066 4.45912 4.51110 4.54315 4.56550 4.68604 4.74669 4.87236 4.90461 4.95376 5.00157 5.10917 5.21010 5.39081 5.42819 5.46280 5.47771 5.63515 6.20791 6.25050 6.47124 6.56351 6.70476 7.07853 7.29969 7.37627 8.75517 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016209 B = 0.001910 C = 0.001784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.991554 B =14653.426361 C =15691.600129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.114 3.886 3 N -0.330 5.330 4 N -0.449 5.449 5 H 0.460 0.540 6 C 0.135 3.865 7 C -0.322 4.322 8 C 0.593 3.407 9 O -0.580 6.580 10 N -0.713 5.713 11 C 0.148 3.852 12 H 0.067 0.933 13 C -0.154 4.154 14 C -0.121 4.121 15 C 0.119 3.881 16 N -0.709 5.709 17 C 0.531 3.469 18 O -0.570 6.570 19 C -0.128 4.128 20 S -0.158 6.158 21 C -0.545 4.545 22 H 0.085 0.915 23 C 0.011 3.989 24 N -0.912 5.912 25 Si 0.999 3.001 26 H -0.260 1.260 27 H -0.281 1.281 28 H -0.262 1.262 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.411 0.589 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.040 0.960 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.043 0.957 41 H 0.419 0.581 42 H 0.110 0.890 43 H 0.113 0.887 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 6.415 -27.935 29.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.053 4.053 3 N -0.154 5.154 4 N -0.155 5.155 5 H 0.308 0.692 6 C -0.020 4.020 7 C -0.337 4.337 8 C 0.382 3.618 9 O -0.461 6.461 10 N -0.365 5.365 11 C 0.043 3.957 12 H 0.085 0.915 13 C -0.212 4.212 14 C -0.159 4.159 15 C -0.004 4.004 16 N -0.364 5.364 17 C 0.317 3.683 18 O -0.448 6.448 19 C -0.280 4.280 20 S 0.070 5.930 21 C -0.693 4.693 22 H 0.103 0.897 23 C -0.193 4.193 24 N -0.549 5.549 25 Si 0.820 3.180 26 H -0.185 1.185 27 H -0.206 1.206 28 H -0.187 1.187 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.249 0.751 33 H 0.248 0.752 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.257 0.743 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.808 8.946 -26.671 28.944 hybrid contribution 2.076 -1.941 -0.074 2.843 sum -4.731 7.005 -26.746 28.050 Atomic orbital electron populations 1.20308 0.85622 1.03979 1.03553 1.22755 0.98034 0.89423 0.95085 1.77128 0.87748 1.22935 1.27609 1.46178 1.07450 1.06197 1.55670 0.69182 1.23796 0.99234 0.85694 0.93228 1.20385 0.93501 0.94019 1.25843 1.17402 0.85372 0.84264 0.74762 1.90725 1.18013 1.84816 1.52547 1.45818 1.09872 1.05473 1.75334 1.20860 0.97608 0.79740 0.97530 0.91493 1.22090 1.02321 1.01932 0.94902 1.22039 1.00458 1.01475 0.91934 1.21385 0.89955 0.94677 0.94423 1.45695 1.40328 1.40668 1.09673 1.20104 0.82774 0.82897 0.82572 1.90708 1.54867 1.37085 1.62159 1.23372 1.01070 1.03126 1.00397 1.85640 1.50560 1.51875 1.04967 1.23174 1.23252 1.23105 0.99740 0.89724 1.26149 0.99855 0.98079 0.95233 1.70183 1.42978 1.37408 1.04303 0.85002 0.77636 0.78082 0.77269 1.18483 1.20621 1.18661 0.90341 0.89944 0.89673 0.75114 0.75207 0.90595 0.90225 0.94054 0.87585 0.87490 0.92260 0.93844 0.74313 0.87197 0.86849 0.92056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.92 71.24 0.71 -0.79 16 2 C 0.11 2.47 7.26 43.51 0.32 2.78 16 3 N -0.33 -6.72 12.63 -46.68 -0.59 -7.31 16 4 N -0.45 -5.29 7.29 -56.31 -0.41 -5.70 16 5 H 0.46 2.06 8.96 -213.42 -1.91 0.15 16 6 C 0.14 1.35 11.52 84.27 0.97 2.32 16 7 C -0.32 -5.92 6.13 -20.15 -0.12 -6.04 16 8 C 0.59 12.11 7.78 86.66 0.67 12.79 16 9 O -0.58 -16.23 14.58 -4.06 -0.06 -16.29 16 10 N -0.71 -9.14 4.52 -445.79 -2.01 -11.15 16 11 C 0.15 1.86 2.57 44.99 0.12 1.97 16 12 H 0.07 1.25 7.58 -2.39 -0.02 1.24 16 13 C -0.15 -1.57 9.48 71.98 0.68 -0.89 16 14 C -0.12 -1.04 4.87 30.60 0.15 -0.89 16 15 C 0.12 2.22 5.56 86.38 0.48 2.70 16 16 N -0.71 -15.00 5.56 -463.06 -2.57 -17.57 16 17 C 0.53 18.39 7.85 87.66 0.69 19.08 16 18 O -0.57 -25.92 15.86 -3.03 -0.05 -25.97 16 19 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 20 S -0.16 -8.60 20.57 -56.49 -1.16 -9.77 16 21 C -0.54 -30.51 9.50 67.95 0.65 -29.86 16 22 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 23 C 0.01 0.65 5.49 84.86 0.47 1.11 16 24 N -0.91 -55.73 13.22 21.65 0.29 -55.44 16 25 Si 1.00 42.81 29.55 68.60 2.03 44.84 16 26 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 27 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 28 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 29 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.85 6.55 -2.38 -0.02 1.83 16 32 H 0.23 -0.13 7.46 -2.91 -0.02 -0.15 16 33 H 0.41 2.58 7.53 -92.71 -0.70 1.88 16 34 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.04 0.63 8.14 -2.38 -0.02 0.61 16 37 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.06 1.22 7.75 -2.39 -0.02 1.20 16 40 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.42 5.43 8.47 -92.71 -0.79 4.64 16 42 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 43 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 44 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -91.01 391.03 -0.67 -91.68 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -2.34 Total: 12.78 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 6.21 Total: -0.09 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -5.30 Total: -97.18 kcal Atomic # 8 Polarization: -42.15 SS G_CDS: -0.11 Total: -42.26 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.77 kcal Total: -91.01 -0.67 -91.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075679396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.046 kcal (2) G-P(sol) polarization free energy of solvation -91.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds