Wall clock time and date at job start Sat Apr 11 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30444 * 125.98996 * 2 1 4 4 N 1.39934 * 108.90019 * 180.02562 * 3 2 1 5 5 H 0.96998 * 125.75215 * 180.02562 * 4 3 2 6 6 C 1.34260 * 108.49003 * 359.74041 * 4 3 2 7 7 C 1.38050 * 107.41402 * 0.40458 * 6 4 3 8 8 C 1.47427 * 126.40979 * 179.86915 * 7 6 4 9 9 O 1.21612 * 119.99768 * 179.68645 * 8 7 6 10 10 N 1.34776 * 120.00550 * 359.67944 * 8 7 6 11 11 C 1.46498 * 120.00351 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47226 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47152 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46830 * 304.99846 * 13 12 11 15 15 C 1.53000 * 109.47187 * 185.00354 * 13 12 11 16 16 N 1.46496 * 109.47630 * 64.99994 * 13 12 11 17 17 C 1.34777 * 120.00258 * 205.00405 * 16 13 12 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 13 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21 27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21 28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21 29 29 H 1.09012 * 109.46834 * 270.00109 * 1 2 3 30 30 H 1.08996 * 109.47278 * 29.99870 * 1 2 3 31 31 H 1.08996 * 109.47218 * 150.00564 * 1 2 3 32 32 H 1.07993 * 126.29269 * 180.24824 * 6 4 3 33 33 H 0.97007 * 119.99765 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.46711 * 60.00749 * 11 10 8 35 35 H 1.08995 * 109.47155 * 300.00701 * 11 10 8 36 36 H 1.08994 * 109.46979 * 59.99957 * 12 11 10 37 37 H 1.09003 * 109.47135 * 300.00519 * 12 11 10 38 38 H 1.08992 * 109.47302 * 59.99702 * 15 13 12 39 39 H 1.09006 * 109.47229 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.46821 * 299.99498 * 15 13 12 41 41 H 0.96999 * 119.99694 * 24.99795 * 16 13 12 42 42 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 43 43 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 44 44 H 0.96995 * 120.00407 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2301 -0.0004 6 6 3.6439 -0.6980 0.0048 7 6 2.3372 -1.1432 -0.0005 8 6 1.8916 -2.5485 -0.0001 9 8 0.7038 -2.8097 0.0006 10 7 2.8004 -3.5438 -0.0007 11 6 2.3575 -4.9402 0.0002 12 6 3.5783 -5.8624 -0.0001 13 6 3.1158 -7.3208 0.0003 14 1 2.4444 -7.4888 0.8424 15 6 4.3314 -8.2414 0.1258 16 7 2.4113 -7.6101 -1.2512 17 6 1.5018 -8.6036 -1.2985 18 8 1.2668 -9.2584 -0.3051 19 6 0.7767 -8.9007 -2.5858 20 16 -0.3688 -10.2784 -2.3289 21 6 -1.0602 -10.4067 -3.9444 22 1 -0.7361 -9.7349 -4.7254 23 6 -2.0222 -11.3705 -4.2130 24 7 -2.4183 -12.1884 -3.2607 25 14 -2.7558 -11.5061 -5.9256 26 1 -1.9437 -12.4465 -6.7389 27 1 -4.1489 -12.0112 -5.8288 28 1 -2.7580 -10.1685 -6.5705 29 1 -0.3633 0.0000 1.0278 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 4.5297 -1.3157 0.0096 33 1 3.7478 -3.3354 -0.0010 34 1 1.7570 -5.1315 -0.8892 35 1 1.7587 -5.1309 0.8908 36 1 4.1784 -5.6710 0.8894 37 1 4.1775 -5.6718 -0.8905 38 1 4.8555 -8.0262 1.0569 39 1 4.0019 -9.2804 0.1256 40 1 5.0028 -8.0734 -0.7163 41 1 2.5994 -7.0865 -2.0458 42 1 0.2195 -8.0185 -2.9009 43 1 1.4995 -9.1684 -3.3565 44 1 -3.0903 -12.8622 -3.4485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077691639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:07 Heat of formation + Delta-G solvation = -16.316425 kcal Electronic energy + Delta-G solvation = -25808.446492 eV Core-core repulsion = 21888.156133 eV Total energy + Delta-G solvation = -3920.290359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.85085 -39.67809 -39.15947 -36.58928 -34.68940 -33.34116 -32.39821 -31.98167 -30.99564 -29.12002 -28.45882 -28.20017 -25.45474 -24.39848 -22.91436 -21.58650 -20.82246 -20.32572 -20.05968 -18.90935 -17.80760 -16.81994 -16.58522 -16.17765 -15.91630 -15.73290 -15.12130 -14.87910 -14.77284 -14.72218 -14.19061 -14.10031 -13.69954 -13.52506 -13.26368 -13.20382 -13.10626 -12.89368 -12.62501 -12.36831 -12.13405 -11.92582 -11.73877 -11.52671 -11.36005 -11.08320 -11.03665 -10.98914 -10.73030 -10.08922 -9.95803 -9.78307 -9.44980 -9.35818 -9.17065 -9.04025 -8.89097 -8.20153 -6.46280 -6.18553 -3.88694 1.01787 1.76509 2.20167 2.91553 3.05938 3.12677 3.16845 3.24833 3.30390 3.34843 3.73858 4.04194 4.11327 4.23533 4.46357 4.60425 4.71526 4.75252 4.91939 4.97040 5.16550 5.18130 5.23251 5.31814 5.36294 5.43789 5.53868 5.56612 5.63479 5.67478 5.68711 5.79517 5.92691 6.01185 6.11143 6.15877 6.17534 6.18911 6.57969 6.67186 7.03536 7.26872 7.62752 7.72528 8.04413 8.38412 8.64546 9.26827 10.88858 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.002018 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.561117 B =13872.047413 C =15454.212666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.137 3.863 3 N -0.300 5.300 4 N -0.461 5.461 5 H 0.444 0.556 6 C 0.104 3.896 7 C -0.286 4.286 8 C 0.590 3.410 9 O -0.532 6.532 10 N -0.731 5.731 11 C 0.118 3.882 12 C -0.137 4.137 13 C 0.147 3.853 14 H 0.092 0.908 15 C -0.163 4.163 16 N -0.736 5.736 17 C 0.534 3.466 18 O -0.516 6.516 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.073 3.927 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.277 1.277 27 H -0.282 1.282 28 H -0.272 1.272 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.185 0.815 33 H 0.394 0.606 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.055 0.945 41 H 0.397 0.603 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.406 24.740 6.936 32.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.031 4.031 3 N -0.123 5.123 4 N -0.165 5.165 5 H 0.289 0.711 6 C -0.050 4.050 7 C -0.302 4.302 8 C 0.377 3.623 9 O -0.409 6.409 10 N -0.383 5.383 11 C -0.005 4.005 12 C -0.175 4.175 13 C 0.041 3.959 14 H 0.110 0.890 15 C -0.221 4.221 16 N -0.391 5.391 17 C 0.320 3.680 18 O -0.390 6.390 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.197 1.197 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.117 0.883 32 H 0.202 0.798 33 H 0.228 0.772 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.231 0.769 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 18.025 24.557 8.660 31.670 hybrid contribution 1.082 0.430 -2.652 2.896 sum 19.108 24.988 6.008 32.025 Atomic orbital electron populations 1.20402 0.85399 1.04379 1.03832 1.22559 0.97563 0.88589 0.94374 1.77223 0.86150 1.22410 1.26563 1.46119 1.07977 1.05447 1.56993 0.71121 1.23135 0.98905 0.85797 0.97121 1.20334 0.92142 0.94648 1.23032 1.17239 0.85684 0.83448 0.75893 1.90807 1.16209 1.84119 1.49739 1.45819 1.09278 1.06303 1.76864 1.21409 0.96739 0.78818 1.03519 1.22103 0.97673 0.94208 1.03546 1.20770 0.94202 0.92294 0.88646 0.89032 1.22173 0.97312 1.01090 1.01536 1.46122 1.42893 1.37078 1.12966 1.20293 0.78397 0.79004 0.90279 1.90699 1.63757 1.48234 1.36343 1.23540 1.03204 1.06479 0.97267 1.85382 1.45327 1.35853 1.16776 1.22868 1.27308 1.21730 0.96400 0.90951 1.24992 0.95713 0.94759 0.98154 1.70014 1.29572 1.18419 1.32286 0.86173 0.78314 0.78487 0.82554 1.20315 1.20758 1.19691 0.89976 0.90883 0.88330 0.79772 0.77197 0.90749 0.90968 0.89812 0.90695 0.91908 0.91437 0.92584 0.76931 0.89201 0.89315 0.92209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.92 36.01 0.36 -0.39 16 2 C 0.14 1.36 7.26 -82.02 -0.60 0.76 16 3 N -0.30 -2.77 12.63 33.89 0.43 -2.35 16 4 N -0.46 -2.38 7.29 30.85 0.22 -2.16 16 5 H 0.44 0.66 8.96 -182.73 -1.64 -0.98 16 6 C 0.10 0.47 11.52 -16.56 -0.19 0.28 16 7 C -0.29 -2.48 6.13 -105.07 -0.64 -3.12 16 8 C 0.59 6.17 7.81 -12.52 -0.10 6.07 16 9 O -0.53 -7.81 14.92 5.27 0.08 -7.73 16 10 N -0.73 -5.24 5.54 -61.38 -0.34 -5.58 16 11 C 0.12 1.03 5.56 -4.04 -0.02 1.01 16 12 C -0.14 -0.85 4.87 -26.73 -0.13 -0.99 16 13 C 0.15 1.48 2.57 -67.94 -0.17 1.31 16 14 H 0.09 1.14 7.58 -51.93 -0.39 0.75 16 15 C -0.16 -1.55 9.48 37.16 0.35 -1.20 16 16 N -0.74 -9.08 4.53 -53.81 -0.24 -9.32 16 17 C 0.53 9.70 7.81 -10.98 -0.09 9.61 16 18 O -0.52 -11.46 15.53 5.56 0.09 -11.38 16 19 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 20 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 21 C -0.53 -15.36 9.50 30.94 0.29 -15.07 16 22 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 24 N -0.87 -26.37 13.22 55.49 0.73 -25.63 16 25 Si 0.92 21.63 29.55 -169.99 -5.02 16.60 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 28 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 29 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.10 1.05 6.55 -51.93 -0.34 0.71 16 32 H 0.19 -0.04 7.46 -52.49 -0.39 -0.43 16 33 H 0.39 1.35 7.40 -40.82 -0.30 1.04 16 34 H 0.07 0.79 7.75 -51.93 -0.40 0.39 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.40 3.82 8.60 -40.82 -0.35 3.47 16 42 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 391.04 15.07 5.89 5.89 Total: -1.00 -39.86 391.04 -8.78 -48.64 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.59 Total: -0.56 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -0.81 Total: -2.59 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.80 Total: -45.03 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.16 Total: -19.10 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.86 -8.78 -48.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077691639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.324 kcal (2) G-P(sol) polarization free energy of solvation -39.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds