Wall clock time and date at job start Sat Apr 11 2020 05:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30444 * 125.98996 * 2 1 4 4 N 1.39934 * 108.90019 * 180.02562 * 3 2 1 5 5 H 0.96998 * 125.75215 * 180.02562 * 4 3 2 6 6 C 1.34260 * 108.49003 * 359.74041 * 4 3 2 7 7 C 1.38050 * 107.41402 * 0.40458 * 6 4 3 8 8 C 1.47427 * 126.40979 * 179.86915 * 7 6 4 9 9 O 1.21612 * 119.99768 * 179.68645 * 8 7 6 10 10 N 1.34776 * 120.00550 * 359.67944 * 8 7 6 11 11 C 1.46498 * 120.00351 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.47226 * 180.02562 * 11 10 8 13 13 C 1.52995 * 109.47152 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.46830 * 304.99846 * 13 12 11 15 15 C 1.53000 * 109.47187 * 185.00354 * 13 12 11 16 16 N 1.46496 * 109.47630 * 64.99994 * 13 12 11 17 17 C 1.34777 * 120.00258 * 205.00405 * 16 13 12 18 18 O 1.21279 * 120.00166 * 359.97438 * 17 16 13 19 19 C 1.50706 * 119.99762 * 179.97438 * 17 16 13 20 20 S 1.81003 * 109.46853 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99846 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00030 * 359.97438 * 21 20 19 23 23 C 1.38802 * 119.99637 * 180.02562 * 21 20 19 24 24 N 1.31628 * 120.00513 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 119.99570 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46946 * 90.00549 * 25 23 21 27 27 H 1.48504 * 109.46826 * 210.00017 * 25 23 21 28 28 H 1.48496 * 109.47486 * 329.99998 * 25 23 21 29 29 H 1.09012 * 109.46834 * 270.00109 * 1 2 3 30 30 H 1.08996 * 109.47278 * 29.99870 * 1 2 3 31 31 H 1.08996 * 109.47218 * 150.00564 * 1 2 3 32 32 H 1.07993 * 126.29269 * 180.24824 * 6 4 3 33 33 H 0.97007 * 119.99765 * 0.02562 * 10 8 7 34 34 H 1.09004 * 109.46711 * 60.00749 * 11 10 8 35 35 H 1.08995 * 109.47155 * 300.00701 * 11 10 8 36 36 H 1.08994 * 109.46979 * 59.99957 * 12 11 10 37 37 H 1.09003 * 109.47135 * 300.00519 * 12 11 10 38 38 H 1.08992 * 109.47302 * 59.99702 * 15 13 12 39 39 H 1.09006 * 109.47229 * 180.02562 * 15 13 12 40 40 H 1.09002 * 109.46821 * 299.99498 * 15 13 12 41 41 H 0.96999 * 119.99694 * 24.99795 * 16 13 12 42 42 H 1.09000 * 109.47318 * 299.99141 * 19 17 16 43 43 H 1.09000 * 109.47161 * 59.99772 * 19 17 16 44 44 H 0.96995 * 120.00407 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0554 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2301 -0.0004 6 6 3.6439 -0.6980 0.0048 7 6 2.3372 -1.1432 -0.0005 8 6 1.8916 -2.5485 -0.0001 9 8 0.7038 -2.8097 0.0006 10 7 2.8004 -3.5438 -0.0007 11 6 2.3575 -4.9402 0.0002 12 6 3.5783 -5.8624 -0.0001 13 6 3.1158 -7.3208 0.0003 14 1 2.4444 -7.4888 0.8424 15 6 4.3314 -8.2414 0.1258 16 7 2.4113 -7.6101 -1.2512 17 6 1.5018 -8.6036 -1.2985 18 8 1.2668 -9.2584 -0.3051 19 6 0.7767 -8.9007 -2.5858 20 16 -0.3688 -10.2784 -2.3289 21 6 -1.0602 -10.4067 -3.9444 22 1 -0.7361 -9.7349 -4.7254 23 6 -2.0222 -11.3705 -4.2130 24 7 -2.4183 -12.1884 -3.2607 25 14 -2.7558 -11.5061 -5.9256 26 1 -1.9437 -12.4465 -6.7389 27 1 -4.1489 -12.0112 -5.8288 28 1 -2.7580 -10.1685 -6.5705 29 1 -0.3633 0.0000 1.0278 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5137 32 1 4.5297 -1.3157 0.0096 33 1 3.7478 -3.3354 -0.0010 34 1 1.7570 -5.1315 -0.8892 35 1 1.7587 -5.1309 0.8908 36 1 4.1784 -5.6710 0.8894 37 1 4.1775 -5.6718 -0.8905 38 1 4.8555 -8.0262 1.0569 39 1 4.0019 -9.2804 0.1256 40 1 5.0028 -8.0734 -0.7163 41 1 2.5994 -7.0865 -2.0458 42 1 0.2195 -8.0185 -2.9009 43 1 1.4995 -9.1684 -3.3565 44 1 -3.0903 -12.8622 -3.4485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077691639.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:07 Heat of formation + Delta-G solvation = -48.863078 kcal Electronic energy + Delta-G solvation = -25809.857820 eV Core-core repulsion = 21888.156133 eV Total energy + Delta-G solvation = -3921.701688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39814 -40.81754 -40.09633 -37.59711 -35.59121 -34.58028 -33.93833 -33.08477 -31.73373 -30.17196 -29.50397 -28.85730 -27.65261 -25.08495 -23.55696 -22.50997 -21.62615 -21.40933 -20.71399 -19.83521 -19.38800 -17.91688 -17.57363 -17.15307 -16.87565 -16.69030 -16.54955 -16.29166 -16.02818 -15.62100 -15.27234 -14.94713 -14.75123 -14.70027 -14.37157 -14.29920 -13.97688 -13.87291 -13.75836 -13.27854 -13.16192 -13.02015 -12.93877 -12.88429 -12.59089 -12.37447 -12.34078 -11.98281 -11.86100 -11.71205 -11.13803 -10.91461 -10.85839 -10.53616 -10.26694 -10.20187 -10.05153 -9.72114 -8.65562 -8.34149 -6.11896 0.56816 1.07581 1.28140 1.42462 1.47749 1.58596 1.66865 1.82094 2.26991 2.27478 2.35562 2.46407 2.99717 3.33653 3.49061 3.76910 3.81484 3.89631 4.06337 4.15147 4.22489 4.30589 4.33353 4.47380 4.49498 4.52316 4.55935 4.72248 4.73143 4.86713 4.88728 4.95936 4.98137 5.11516 5.20676 5.38050 5.42111 5.43842 5.51013 5.61291 6.20232 6.28867 6.48187 6.56475 6.72100 7.07001 7.31469 7.38140 8.75060 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.012968 B = 0.002018 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.561117 B =13872.047413 C =15454.212666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.114 3.886 3 N -0.330 5.330 4 N -0.447 5.447 5 H 0.462 0.538 6 C 0.144 3.856 7 C -0.323 4.323 8 C 0.586 3.414 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.120 3.880 12 C -0.116 4.116 13 C 0.141 3.859 14 H 0.062 0.938 15 C -0.157 4.157 16 N -0.709 5.709 17 C 0.535 3.465 18 O -0.565 6.565 19 C -0.131 4.131 20 S -0.152 6.152 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.012 3.988 24 N -0.911 5.911 25 Si 0.999 3.001 26 H -0.266 1.266 27 H -0.278 1.278 28 H -0.259 1.259 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.243 0.757 33 H 0.418 0.582 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.077 0.923 41 H 0.415 0.585 42 H 0.104 0.896 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.263 26.831 5.497 35.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.053 4.053 3 N -0.154 5.154 4 N -0.153 5.153 5 H 0.310 0.690 6 C -0.011 4.011 7 C -0.338 4.338 8 C 0.375 3.625 9 O -0.470 6.470 10 N -0.361 5.361 11 C -0.004 4.004 12 C -0.154 4.154 13 C 0.036 3.964 14 H 0.081 0.919 15 C -0.215 4.215 16 N -0.364 5.364 17 C 0.320 3.680 18 O -0.443 6.443 19 C -0.282 4.282 20 S 0.075 5.925 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.193 4.193 24 N -0.547 5.547 25 Si 0.820 3.180 26 H -0.191 1.191 27 H -0.203 1.203 28 H -0.183 1.183 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.259 0.741 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.134 0.866 37 H 0.126 0.874 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.096 0.904 41 H 0.252 0.748 42 H 0.122 0.878 43 H 0.128 0.872 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 21.992 26.727 7.208 35.355 hybrid contribution 0.044 -0.094 -2.132 2.134 sum 22.036 26.633 5.077 34.938 Atomic orbital electron populations 1.20301 0.86202 1.03675 1.03607 1.22667 0.97792 0.89650 0.95193 1.77143 0.87940 1.22703 1.27631 1.46169 1.07318 1.06281 1.55491 0.68960 1.23843 0.98937 0.85572 0.92719 1.20290 0.93897 0.93303 1.26305 1.17592 0.85257 0.84649 0.75010 1.90781 1.18688 1.84985 1.52519 1.45527 1.10109 1.04971 1.75526 1.21267 0.97658 0.80235 1.01262 1.21995 0.96692 0.90005 1.06722 1.21002 0.93774 0.95415 0.86232 0.91946 1.22119 0.97083 0.98334 1.03956 1.45904 1.40808 1.34846 1.14801 1.19993 0.79227 0.79971 0.88780 1.90686 1.65651 1.50476 1.37535 1.23392 1.02103 1.03542 0.99209 1.85554 1.48365 1.40423 1.18165 1.23201 1.27631 1.22123 0.96442 0.90011 1.26142 0.96041 0.94128 1.02965 1.70182 1.30345 1.19264 1.34948 0.84951 0.77330 0.79107 0.76565 1.19115 1.20319 1.18332 0.90051 0.90068 0.90403 0.74124 0.74447 0.93030 0.93648 0.86587 0.87402 0.89272 0.95322 0.90385 0.74841 0.87783 0.87162 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 9.92 71.24 0.71 -0.87 16 2 C 0.11 2.26 7.26 43.51 0.32 2.57 16 3 N -0.33 -5.71 12.63 -46.68 -0.59 -6.30 16 4 N -0.45 -3.14 7.29 -56.32 -0.41 -3.55 16 5 H 0.46 -0.41 8.96 -213.43 -1.91 -2.33 16 6 C 0.14 0.70 11.52 84.28 0.97 1.67 16 7 C -0.32 -5.08 6.13 -20.15 -0.12 -5.20 16 8 C 0.59 11.85 7.81 86.66 0.68 12.53 16 9 O -0.59 -18.22 14.92 -4.07 -0.06 -18.28 16 10 N -0.71 -8.24 5.54 -466.37 -2.59 -10.82 16 11 C 0.12 1.90 5.56 86.38 0.48 2.38 16 12 C -0.12 -0.98 4.87 30.59 0.15 -0.83 16 13 C 0.14 2.59 2.57 44.99 0.12 2.70 16 14 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 15 C -0.16 -2.59 9.48 71.98 0.68 -1.90 16 16 N -0.71 -16.50 4.53 -442.54 -2.00 -18.51 16 17 C 0.53 19.60 7.81 87.66 0.68 20.28 16 18 O -0.57 -26.22 15.53 -3.03 -0.05 -26.27 16 19 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 20 S -0.15 -8.62 20.57 -56.49 -1.16 -9.79 16 21 C -0.55 -31.79 9.50 67.96 0.65 -31.14 16 22 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 23 C 0.01 0.69 5.49 84.86 0.47 1.16 16 24 N -0.91 -56.86 13.22 21.65 0.29 -56.58 16 25 Si 1.00 44.41 29.55 68.60 2.03 46.43 16 26 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 27 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 28 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 29 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.86 6.55 -2.39 -0.02 1.84 16 32 H 0.24 -1.83 7.46 -2.91 -0.02 -1.85 16 33 H 0.42 0.71 7.40 -92.70 -0.69 0.02 16 34 H 0.05 1.06 7.75 -2.39 -0.02 1.05 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.03 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.41 6.81 8.60 -92.71 -0.80 6.02 16 42 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 43 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -96.06 391.04 -0.67 -96.73 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -2.34 Total: 8.44 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 6.21 Total: -1.51 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -5.30 Total: -95.76 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -0.11 Total: -44.55 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.79 kcal Total: -96.06 -0.67 -96.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077691639.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.867 kcal (2) G-P(sol) polarization free energy of solvation -96.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds