Wall clock time and date at job start Sat Apr 11 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30882 * 122.98516 * 2 1 4 4 C 1.30230 * 117.26356 * 180.28219 * 3 2 1 5 5 N 1.37840 * 124.75038 * 179.69697 * 4 3 2 6 6 C 1.46493 * 119.99951 * 0.03646 * 5 4 3 7 7 C 1.46506 * 120.00103 * 180.02562 * 5 4 3 8 8 S 1.70929 * 110.50383 * 359.73074 * 4 3 2 9 9 C 1.36707 * 122.98767 * 179.78038 * 2 1 3 10 10 C 1.46225 * 126.10560 * 0.02671 * 9 2 1 11 11 O 1.21749 * 120.00370 * 359.71150 * 10 9 2 12 12 N 1.34787 * 119.99878 * 179.71123 * 10 9 2 13 13 C 1.46494 * 120.00004 * 179.97438 * 12 10 9 14 14 H 1.09008 * 110.88436 * 37.42922 * 13 12 10 15 15 C 1.54908 * 111.00587 * 273.54798 * 13 12 10 16 16 N 1.47425 * 104.92961 * 204.82382 * 15 13 12 17 17 C 1.36938 * 125.65179 * 204.15650 * 16 15 13 18 18 H 1.08005 * 119.99558 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00146 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00086 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99779 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47268 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47204 * 119.99715 * 21 19 17 24 24 H 1.48508 * 109.46889 * 239.99519 * 21 19 17 25 25 C 1.47290 * 108.55742 * 24.15407 * 16 15 13 26 26 C 1.54325 * 107.30599 * 358.92448 * 25 16 15 27 27 H 1.08997 * 110.72163 * 96.18354 * 26 25 16 28 28 O 1.42898 * 110.87178 * 219.38109 * 26 25 16 29 29 H 1.09004 * 109.47070 * 270.21578 * 1 2 3 30 30 H 1.08999 * 109.47189 * 30.21523 * 1 2 3 31 31 H 1.08998 * 109.47286 * 150.21807 * 1 2 3 32 32 H 1.09001 * 109.47325 * 90.00037 * 6 5 4 33 33 H 1.09003 * 109.47597 * 210.00767 * 6 5 4 34 34 H 1.09004 * 109.47286 * 330.00828 * 6 5 4 35 35 H 1.08990 * 109.47057 * 359.97438 * 7 5 4 36 36 H 1.09000 * 109.46573 * 119.99656 * 7 5 4 37 37 H 1.09001 * 109.46587 * 239.99551 * 7 5 4 38 38 H 0.96999 * 119.99460 * 0.02562 * 12 10 9 39 39 H 1.09002 * 110.36632 * 323.71778 * 15 13 12 40 40 H 1.08995 * 110.36781 * 85.93015 * 15 13 12 41 41 H 0.96999 * 120.00175 * 180.02562 * 20 19 17 42 42 H 1.09004 * 109.85762 * 239.50064 * 25 16 15 43 43 H 1.08999 * 109.87327 * 118.35916 * 25 16 15 44 44 H 0.96700 * 114.00884 * 293.61196 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2195 1.0978 0.0000 4 6 3.5153 0.9680 -0.0057 5 7 4.4100 2.0166 -0.0126 6 6 3.9203 3.3973 -0.0131 7 6 5.8507 1.7504 -0.0192 8 16 3.9515 -0.6847 -0.0044 9 6 2.2513 -1.1467 0.0044 10 6 1.7295 -2.5126 0.0091 11 8 0.5273 -2.7051 0.0146 12 7 2.5795 -3.5587 0.0073 13 6 2.0567 -4.9272 0.0125 14 1 1.1597 -5.0029 -0.6021 15 6 1.7817 -5.4111 1.4582 16 7 1.8660 -6.8813 1.3892 17 6 1.2642 -7.7567 2.2532 18 1 0.6665 -7.3828 3.0714 19 6 1.4231 -9.1245 2.0782 20 7 2.1519 -9.5801 1.0814 21 14 0.6015 -10.3186 3.2565 22 1 -0.1564 -9.5587 4.2828 23 1 -0.3291 -11.1966 2.5026 24 1 1.6372 -11.1498 3.9211 25 6 2.7053 -7.2491 0.2360 26 6 3.1374 -5.9380 -0.4540 27 1 4.1260 -5.6304 -0.1130 28 8 3.1167 -6.0802 -1.8757 29 1 -0.3633 0.0039 1.0277 30 1 -0.3633 0.8880 -0.5172 31 1 -0.3634 -0.8919 -0.5104 32 1 3.8041 3.7420 1.0145 33 1 4.6349 4.0362 -0.5321 34 1 2.9573 3.4411 -0.5219 35 1 6.0212 0.6739 -0.0171 36 1 6.2968 2.1876 -0.9125 37 1 6.3057 2.1918 0.8675 38 1 3.5372 -3.4053 0.0032 39 1 2.5371 -5.0193 2.1395 40 1 0.7866 -5.1028 1.7785 41 1 2.2627 -10.5359 0.9588 42 1 2.1315 -7.8621 -0.4590 43 1 3.5845 -7.7958 0.5770 44 1 3.7737 -6.7014 -2.2186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077787882.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:09 Heat of formation + Delta-G solvation = 5.636443 kcal Electronic energy + Delta-G solvation = -27240.387948 eV Core-core repulsion = 23321.049537 eV Total energy + Delta-G solvation = -3919.338411 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.31509 -39.34238 -37.83277 -37.01817 -35.04307 -34.00410 -31.76328 -31.33891 -28.97072 -28.89083 -27.87409 -26.81394 -26.56030 -24.39490 -22.44602 -21.85615 -20.55874 -20.18180 -19.39621 -18.44986 -17.29984 -16.89271 -16.64343 -16.27407 -16.15372 -15.48884 -15.06916 -14.92183 -14.51921 -14.12426 -13.94928 -13.82339 -13.54180 -13.26892 -13.14075 -13.09846 -12.67012 -12.59746 -12.54228 -12.44508 -12.35883 -12.02862 -11.46468 -11.29335 -11.22558 -10.86518 -10.81346 -10.18774 -10.11510 -10.04798 -9.87479 -9.81875 -9.65969 -9.43275 -9.28510 -8.81320 -8.61874 -7.83849 -6.88853 -5.74393 -3.08401 0.41470 0.79488 1.50581 2.36690 2.51140 3.35894 3.40518 3.41167 3.46739 3.49232 4.12192 4.45896 4.54693 4.63893 4.73483 4.74382 5.00855 5.04415 5.09229 5.12853 5.25286 5.36548 5.46264 5.59488 5.64294 5.69090 5.71133 5.81650 5.85970 6.11626 6.14759 6.17842 6.30867 6.53359 6.59352 6.67564 6.92270 7.33754 7.48321 7.60642 7.72848 7.77574 8.12760 8.18890 8.43420 9.16985 9.77251 10.40802 11.37825 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020953 B = 0.002502 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.985459 B =11186.814481 C =11617.916041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.202 3.798 3 N -0.552 5.552 4 C 0.325 3.675 5 N -0.582 5.582 6 C 0.100 3.900 7 C 0.090 3.910 8 S 0.125 5.875 9 C -0.342 4.342 10 C 0.604 3.396 11 O -0.528 6.528 12 N -0.713 5.713 13 C 0.142 3.858 14 H 0.105 0.895 15 C 0.130 3.870 16 N -0.600 5.600 17 C -0.225 4.225 18 H 0.082 0.918 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.915 3.085 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C 0.154 3.846 26 C 0.068 3.932 27 H 0.056 0.944 28 O -0.562 6.562 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.392 0.608 39 H 0.023 0.977 40 H 0.052 0.948 41 H 0.252 0.748 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.979 24.575 -4.673 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.063 3.937 3 N -0.278 5.278 4 C -0.042 4.042 5 N -0.300 5.300 6 C -0.045 4.045 7 C -0.053 4.053 8 S 0.376 5.624 9 C -0.468 4.468 10 C 0.390 3.610 11 O -0.407 6.407 12 N -0.362 5.362 13 C 0.037 3.963 14 H 0.123 0.877 15 C 0.003 3.997 16 N -0.328 5.328 17 C -0.353 4.353 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.572 5.572 21 Si 0.745 3.255 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C 0.028 3.972 26 C 0.008 3.992 27 H 0.074 0.926 28 O -0.367 6.367 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.226 0.774 39 H 0.041 0.959 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 9.549 24.761 -4.585 26.932 hybrid contribution -0.061 -0.904 0.605 1.090 sum 9.488 23.857 -3.980 25.981 Atomic orbital electron populations 1.20673 0.85985 1.04394 1.03763 1.20533 0.97854 0.84219 0.91072 1.66037 1.02106 1.31712 1.27951 1.23695 0.90956 0.92729 0.96852 1.45691 1.03847 1.03513 1.76984 1.21713 1.01106 0.79562 1.02103 1.21901 0.77991 1.02444 1.02933 1.83635 1.07311 0.98292 1.73150 1.25075 0.94058 0.98708 1.28958 1.16476 0.86121 0.82199 0.76183 1.90798 1.14202 1.84863 1.50828 1.45797 1.08979 1.06055 1.75411 1.22253 0.97452 0.78039 0.98587 0.87729 1.21851 0.99459 0.86018 0.92417 1.44317 1.58107 0.99031 1.31342 1.19143 1.24177 0.86543 1.05454 0.90056 1.24815 1.00299 0.96746 0.98649 1.69928 1.43370 1.12582 1.31362 0.85992 0.78544 0.81026 0.79903 1.20410 1.21670 1.21767 1.21855 0.95586 0.90277 0.89446 1.23446 0.96698 0.97918 0.81103 0.92568 1.86471 1.62213 1.67296 1.20750 0.89977 0.91029 0.87882 0.92595 0.90989 0.89997 0.90614 0.90887 0.90912 0.77445 0.95931 0.92932 0.93732 0.92030 0.93283 0.77686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.15 9.70 36.01 0.35 -0.80 16 2 C 0.20 2.85 6.83 -83.55 -0.57 2.28 16 3 N -0.55 -7.23 9.71 -10.94 -0.11 -7.34 16 4 C 0.33 3.61 7.72 -87.98 -0.68 2.93 16 5 N -0.58 -4.59 3.36 -192.00 -0.64 -5.23 16 6 C 0.10 0.60 10.59 59.84 0.63 1.23 16 7 C 0.09 0.41 10.70 59.85 0.64 1.05 16 8 S 0.13 1.35 20.44 -107.50 -2.20 -0.84 16 9 C -0.34 -4.97 6.49 -36.93 -0.24 -5.21 16 10 C 0.60 10.34 7.76 -13.05 -0.10 10.24 16 11 O -0.53 -10.52 14.04 5.14 0.07 -10.44 16 12 N -0.71 -11.68 5.23 -53.17 -0.28 -11.95 16 13 C 0.14 2.78 3.04 -65.79 -0.20 2.58 16 14 H 0.10 2.31 7.73 -51.92 -0.40 1.91 16 15 C 0.13 2.87 6.92 -2.53 -0.02 2.85 16 16 N -0.60 -15.60 3.40 -169.85 -0.58 -16.17 16 17 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 18 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 19 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.98 10.34 55.49 0.57 -26.41 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 C 0.15 3.69 5.16 -2.92 -0.02 3.67 16 26 C 0.07 1.29 3.95 -24.90 -0.10 1.19 16 27 H 0.06 0.93 8.00 -51.93 -0.42 0.52 16 28 O -0.56 -9.85 13.40 -35.23 -0.47 -10.32 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.49 6.04 -51.93 -0.31 1.18 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.25 8.07 -51.93 -0.42 -0.17 16 34 H 0.08 0.61 7.59 -51.93 -0.39 0.22 16 35 H 0.08 0.36 6.31 -51.93 -0.33 0.03 16 36 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 38 H 0.39 5.43 7.68 -40.82 -0.31 5.12 16 39 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.06 1.66 7.31 -51.93 -0.38 1.28 16 43 H 0.05 1.26 7.52 -51.93 -0.39 0.87 16 44 H 0.38 4.96 9.12 45.56 0.42 5.38 16 LS Contribution 373.92 15.07 5.63 5.63 Total: -1.00 -35.04 373.92 -9.01 -44.05 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.44 Total: 6.62 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -0.55 Total: 15.13 kcal Atomic # 7 Polarization: -66.07 SS G_CDS: -1.03 Total: -67.11 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.40 Total: -20.76 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.20 Total: -0.84 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.04 -9.01 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077787882.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.686 kcal (2) G-P(sol) polarization free energy of solvation -35.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds