Wall clock time and date at job start Sat Apr 11 2020 05:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 114.00134 * 2 1 4 4 H 1.08995 * 110.63967 * 31.68893 * 3 2 1 5 5 C 1.54323 * 110.71994 * 268.54575 * 3 2 1 6 6 N 1.47024 * 107.26912 * 219.44065 * 5 3 2 7 7 C 1.36935 * 125.64446 * 178.97424 * 6 5 3 8 8 H 1.08004 * 119.99942 * 179.97438 * 7 6 5 9 9 C 1.38813 * 120.00256 * 359.97438 * 7 6 5 10 10 N 1.31616 * 119.99878 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99798 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46969 * 89.99996 * 11 9 7 13 13 H 1.48498 * 109.46689 * 209.99676 * 11 9 7 14 14 H 1.48489 * 109.47210 * 329.99846 * 11 9 7 15 15 C 1.47418 * 108.70406 * 358.94752 * 6 5 3 16 16 C 1.54914 * 104.83479 * 24.12446 * 15 6 5 17 17 H 1.09000 * 111.00646 * 81.06524 * 16 15 6 18 18 N 1.46502 * 111.00259 * 204.92149 * 16 15 6 19 19 C 1.34777 * 119.99680 * 267.19328 * 18 16 15 20 20 O 1.21590 * 119.99987 * 359.97438 * 19 18 16 21 21 C 1.47547 * 120.00092 * 180.02562 * 19 18 16 22 22 C 1.39906 * 120.18535 * 89.72359 * 21 19 18 23 23 F 1.35097 * 120.09858 * 359.97438 * 22 21 19 24 24 C 1.38225 * 119.80227 * 179.74624 * 22 21 19 25 25 C 1.38310 * 120.18709 * 0.50894 * 24 22 21 26 26 C 1.50701 * 119.80383 * 179.74350 * 25 24 22 27 27 C 1.38300 * 120.38681 * 359.76720 * 25 24 22 28 28 C 1.38227 * 120.18727 * 359.97438 * 27 25 24 29 29 F 1.35103 * 120.09069 * 179.97438 * 28 27 25 30 30 H 1.09001 * 109.47103 * 300.00246 * 1 2 3 31 31 H 1.09004 * 109.47054 * 59.99750 * 1 2 3 32 32 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.88399 * 338.86366 * 5 3 2 34 34 H 1.08996 * 109.88070 * 99.87174 * 5 3 2 35 35 H 0.97000 * 119.99803 * 179.97438 * 10 9 7 36 36 H 1.08998 * 110.37092 * 142.96618 * 15 6 5 37 37 H 1.09006 * 110.36538 * 265.28521 * 15 6 5 38 38 H 0.96998 * 120.00104 * 87.19941 * 18 16 15 39 39 H 1.07994 * 119.91003 * 180.23340 * 24 22 21 40 40 H 1.09004 * 109.47168 * 270.02008 * 26 25 24 41 41 H 1.08991 * 109.47424 * 30.02281 * 26 25 24 42 42 H 1.09004 * 109.46739 * 150.02635 * 26 25 24 43 43 H 1.07997 * 119.90941 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3737 2.0095 0.5358 5 6 2.2659 1.7893 -1.4429 6 7 3.5563 2.4939 -1.4449 7 6 4.1554 3.0588 -2.5390 8 1 5.1082 3.5568 -2.4361 9 6 3.5381 2.9914 -3.7806 10 7 2.3772 2.3841 -3.9062 11 14 4.3552 3.7627 -5.2729 12 1 5.2314 2.7603 -5.9308 13 1 3.3130 4.2133 -6.2301 14 1 5.1704 4.9273 -4.8442 15 6 4.0980 2.4921 -0.0739 16 6 3.4354 1.2717 0.6128 17 1 3.9515 0.3481 0.3509 18 7 3.3863 1.4496 2.0661 19 6 4.3814 0.9691 2.8377 20 8 5.3196 0.3876 2.3276 21 6 4.3319 1.1476 4.3015 22 6 3.7125 0.1858 5.1069 23 9 3.1566 -0.9107 4.5468 24 6 3.6752 0.3585 6.4778 25 6 4.2387 1.4833 7.0527 26 6 4.1881 1.6656 8.5478 27 6 4.8479 2.4417 6.2634 28 6 4.8988 2.2824 4.8913 29 9 5.4940 3.2202 4.1221 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.3089 0.9349 -2.1183 34 1 1.4704 2.4670 -1.7530 35 1 1.9457 2.3373 -4.7737 36 1 5.1814 2.3740 -0.0941 37 1 3.8255 3.4124 0.4429 38 1 2.6377 1.9130 2.4731 39 1 3.2009 -0.3847 7.1015 40 1 3.2798 2.2045 8.8175 41 1 4.1892 0.6897 9.0331 42 1 5.0586 2.2347 8.8740 43 1 5.2850 3.3172 6.7204 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001081927330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:17 Heat of formation + Delta-G solvation = -111.236563 kcal Electronic energy + Delta-G solvation = -29916.002235 eV Core-core repulsion = 25405.462693 eV Total energy + Delta-G solvation = -4510.539543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.31676 -49.28845 -40.09095 -39.04525 -38.01584 -35.89570 -34.11627 -33.19452 -31.70090 -30.81934 -28.99440 -28.19902 -26.90117 -26.12179 -24.31399 -23.32453 -22.93458 -21.03129 -20.54675 -20.07262 -18.34157 -17.76901 -17.74098 -16.97695 -16.62631 -16.22702 -16.07337 -15.57949 -15.52569 -15.51348 -14.86358 -14.53618 -14.34382 -14.30524 -14.15085 -14.03758 -13.79876 -13.57476 -13.22951 -12.82751 -12.44012 -12.36893 -12.23151 -12.16605 -11.91973 -11.87650 -11.55449 -11.24573 -11.00170 -10.79994 -10.76290 -10.18673 -10.03091 -9.95762 -9.78906 -9.25364 -9.18864 -9.14552 -8.79686 -8.59372 -6.88716 -5.72675 -3.07737 0.36799 0.55862 2.49154 2.79045 3.11165 3.40809 3.42040 3.46753 3.48478 3.90701 4.09596 4.14231 4.42801 4.44490 4.54901 4.61895 4.89073 5.06430 5.09513 5.12538 5.36042 5.37393 5.40663 5.49467 5.51693 5.57226 5.59338 5.64993 5.70990 5.81686 5.85518 5.94264 6.03615 6.14031 6.28195 6.46133 6.61726 6.81344 7.25152 7.47331 7.53769 7.71798 7.86390 8.17567 8.22706 9.18079 9.78018 10.41069 11.38849 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017026 B = 0.002980 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.107878 B = 9392.277410 C =10530.953589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.164 3.836 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.007 4.007 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.110 0.890 18 N -0.701 5.701 19 C 0.566 3.434 20 O -0.516 6.516 21 C -0.202 4.202 22 C 0.169 3.831 23 F -0.118 7.118 24 C -0.169 4.169 25 C -0.015 4.015 26 C -0.118 4.118 27 C -0.169 4.169 28 C 0.170 3.830 29 F -0.117 7.117 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.253 0.747 36 H 0.051 0.949 37 H 0.025 0.975 38 H 0.398 0.602 39 H 0.148 0.852 40 H 0.082 0.918 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.467 -1.445 26.117 26.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.327 5.327 7 C -0.356 4.356 8 H 0.099 0.901 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.004 3.996 16 C 0.027 3.973 17 H 0.128 0.872 18 N -0.350 5.350 19 C 0.349 3.651 20 O -0.391 6.391 21 C -0.207 4.207 22 C 0.149 3.851 23 F -0.096 7.096 24 C -0.188 4.188 25 C -0.016 4.016 26 C -0.175 4.175 27 C -0.188 4.188 28 C 0.150 3.850 29 F -0.095 7.095 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.232 0.768 39 H 0.166 0.834 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.726 -2.022 25.421 25.559 hybrid contribution -0.264 0.781 -0.943 1.253 sum -1.990 -1.241 24.477 24.589 Atomic orbital electron populations 1.22703 0.81655 1.02064 0.99811 1.87911 1.19182 1.27441 1.95071 1.23839 0.92463 0.84208 0.99793 0.91942 1.21589 0.88601 0.96978 0.88975 1.44251 1.20137 1.65702 1.02659 1.19084 1.02502 1.28700 0.85320 0.90101 1.24821 0.97183 1.00716 0.97635 1.69936 1.16359 1.47525 1.23211 0.86067 0.78134 0.78743 0.82515 1.21475 1.21669 1.20628 1.21822 0.97523 0.93509 0.86781 1.22480 0.96553 1.01535 0.76740 0.87244 1.45904 1.23632 1.57681 1.07790 1.17677 0.83143 0.79307 0.84985 1.90853 1.33219 1.40999 1.73979 1.20017 1.07745 0.97343 0.95583 1.17269 0.93880 0.83286 0.90663 1.91602 1.82157 1.50252 1.85625 1.21013 1.04950 1.00511 0.92360 1.19671 0.93236 0.91810 0.96842 1.20897 1.03522 1.03571 0.89471 1.21024 1.04677 1.02176 0.90909 1.17273 0.93700 0.85415 0.88617 1.91612 1.80440 1.62353 1.75123 0.94871 0.93510 0.90223 0.91898 0.93287 0.93654 0.93036 0.95762 0.76777 0.83395 0.89937 0.90541 0.90522 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.88 101.05 1.10 1.61 16 2 O -0.38 -7.21 10.43 -35.23 -0.37 -7.58 16 3 C 0.06 1.09 3.05 -24.90 -0.08 1.02 16 4 H 0.06 1.07 7.74 -51.93 -0.40 0.67 16 5 C 0.16 4.05 5.15 -3.06 -0.02 4.03 16 6 N -0.60 -15.75 3.39 -170.08 -0.58 -16.33 16 7 C -0.23 -6.49 10.28 -15.06 -0.15 -6.64 16 8 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 9 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 10 N -0.92 -27.25 10.31 55.49 0.57 -26.67 16 11 Si 0.92 22.42 29.55 -169.99 -5.02 17.40 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.13 2.90 6.93 -2.53 -0.02 2.88 16 16 C 0.13 2.61 3.15 -65.78 -0.21 2.40 16 17 H 0.11 2.46 7.54 -51.93 -0.39 2.07 16 18 N -0.70 -11.39 5.19 -52.76 -0.27 -11.66 16 19 C 0.57 9.72 6.54 -12.46 -0.08 9.64 16 20 O -0.52 -10.97 16.75 5.29 0.09 -10.89 16 21 C -0.20 -2.69 5.64 -104.86 -0.59 -3.28 16 22 C 0.17 1.94 7.29 -38.96 -0.28 1.66 16 23 F -0.12 -1.56 16.83 2.25 0.04 -1.52 16 24 C -0.17 -1.34 9.65 -39.56 -0.38 -1.72 16 25 C -0.02 -0.10 5.88 -104.57 -0.62 -0.72 16 26 C -0.12 -0.40 10.00 36.01 0.36 -0.04 16 27 C -0.17 -1.35 9.65 -39.56 -0.38 -1.73 16 28 C 0.17 1.97 7.29 -38.97 -0.28 1.69 16 29 F -0.12 -1.58 16.83 2.25 0.04 -1.54 16 30 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.76 7.29 -51.93 -0.38 1.38 16 34 H 0.05 1.30 7.50 -51.93 -0.39 0.91 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.40 5.26 8.56 -40.82 -0.35 4.91 16 39 H 0.15 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.19 8.08 -51.93 -0.42 -0.23 16 42 H 0.08 0.20 8.08 -51.93 -0.42 -0.22 16 43 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -34.59 373.35 -7.28 -41.87 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.68 Total: 0.80 kcal Atomic # 6 Polarization: 12.22 SS G_CDS: -1.73 Total: 10.49 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.28 Total: -54.66 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.28 Total: -18.46 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.08 Total: -3.06 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.59 -7.28 -41.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081927330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.362 kcal (2) G-P(sol) polarization free energy of solvation -34.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds