Wall clock time and date at job start Sat Apr 11 2020 05:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 114.00119 * 2 1 4 4 H 1.08994 * 110.91965 * 26.09539 * 3 2 1 5 5 C 1.55124 * 111.15857 * 262.16558 * 3 2 1 6 6 N 1.47421 * 104.94279 * 205.13302 * 5 3 2 7 7 C 1.36942 * 125.64782 * 204.04538 * 6 5 3 8 8 H 1.08001 * 119.99837 * 179.97438 * 7 6 5 9 9 C 1.38809 * 119.99784 * 359.95069 * 7 6 5 10 10 N 1.31615 * 120.00291 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99837 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.46792 * 0.02562 * 11 9 7 13 13 H 1.48496 * 109.47281 * 120.00090 * 11 9 7 14 14 H 1.48501 * 109.47264 * 240.00411 * 11 9 7 15 15 C 1.47026 * 108.70476 * 24.00271 * 6 5 3 16 16 C 1.54320 * 107.26807 * 358.94402 * 15 6 5 17 17 H 1.08997 * 110.72351 * 96.34785 * 16 15 6 18 18 N 1.46503 * 110.71790 * 219.44325 * 16 15 6 19 19 C 1.34774 * 119.99542 * 271.15623 * 18 16 15 20 20 O 1.21589 * 120.00297 * 0.02562 * 19 18 16 21 21 C 1.47547 * 119.99818 * 180.02562 * 19 18 16 22 22 C 1.39925 * 120.18840 * 270.00123 * 21 19 18 23 23 F 1.35098 * 120.09564 * 359.74485 * 22 21 19 24 24 C 1.38195 * 119.80597 * 179.72494 * 22 21 19 25 25 C 1.38320 * 120.19176 * 359.97438 * 24 22 21 26 26 C 1.38285 * 120.38667 * 0.02562 * 25 24 22 27 27 C 1.50694 * 119.90850 * 179.97438 * 26 25 24 28 28 C 1.38246 * 120.18523 * 359.97438 * 26 25 24 29 29 F 1.35104 * 120.09251 * 180.02562 * 28 26 25 30 30 H 1.08993 * 109.47147 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46693 * 300.00527 * 1 2 3 32 32 H 1.08999 * 109.46849 * 60.00461 * 1 2 3 33 33 H 1.09004 * 110.41551 * 86.20244 * 5 3 2 34 34 H 1.09001 * 110.21210 * 323.95259 * 5 3 2 35 35 H 0.96997 * 120.00100 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.88223 * 239.52445 * 15 6 5 37 37 H 1.08999 * 110.00419 * 118.43025 * 15 6 5 38 38 H 0.96998 * 120.00215 * 91.15647 * 18 16 15 39 39 H 1.08004 * 119.90346 * 180.02562 * 24 22 21 40 40 H 1.08003 * 119.80958 * 180.02562 * 25 24 22 41 41 H 1.08999 * 109.47375 * 89.99110 * 27 26 25 42 42 H 1.08997 * 109.47189 * 209.99666 * 27 26 25 43 43 H 1.09008 * 109.47199 * 329.99451 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3333 2.0329 0.4478 5 6 2.4182 1.7367 -1.4332 6 7 3.4968 2.7231 -1.2408 7 6 3.8518 3.7013 -2.1309 8 1 4.6598 4.3782 -1.8955 9 6 3.1734 3.8226 -3.3358 10 7 2.1888 2.9978 -3.6227 11 14 3.6581 5.1567 -4.5503 12 1 4.7868 5.9457 -3.9945 13 1 4.0750 4.5321 -5.8314 14 1 2.4983 6.0524 -4.7907 15 6 4.1277 2.4831 0.0654 16 6 3.3825 1.3033 0.7242 17 1 3.9106 0.3664 0.5471 18 7 3.2108 1.5358 2.1605 19 6 4.1627 1.1351 3.0264 20 8 5.1641 0.5812 2.6156 21 6 3.9896 1.3688 4.4729 22 6 4.4562 2.5525 5.0552 23 9 5.0720 3.4844 4.2953 24 6 4.2848 2.7656 6.4098 25 6 3.6537 1.8132 7.1895 26 6 3.1896 0.6405 6.6223 27 6 2.5041 -0.3900 7.4819 28 6 3.3526 0.4110 5.2688 29 9 2.8979 -0.7351 4.7165 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.5730 2.1942 -1.9476 34 1 2.7854 0.8777 -1.9948 35 1 1.7145 3.0828 -4.4645 36 1 4.0386 3.3726 0.6891 37 1 5.1790 2.2288 -0.0694 38 1 2.4121 1.9780 2.4881 39 1 4.6439 3.6789 6.8609 40 1 3.5227 1.9863 8.2475 41 1 1.4328 -0.1903 7.5042 42 1 2.6801 -1.3831 7.0686 43 1 2.9038 -0.3421 8.4950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082098021.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:19 Heat of formation + Delta-G solvation = -109.154516 kcal Electronic energy + Delta-G solvation = -30092.270060 eV Core-core repulsion = 25581.820802 eV Total energy + Delta-G solvation = -4510.449258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.32485 -49.25840 -40.08360 -38.98171 -37.96546 -35.92472 -34.12145 -33.07059 -31.92292 -31.21936 -28.81196 -27.27937 -27.06750 -26.08684 -24.87492 -23.82357 -22.45976 -20.92461 -20.59019 -19.89830 -18.54245 -17.87660 -17.70769 -16.95117 -16.62575 -16.26247 -15.93765 -15.59840 -15.48780 -15.27433 -14.88445 -14.71730 -14.43479 -14.37077 -14.17037 -13.88646 -13.78100 -13.40021 -13.22331 -12.90811 -12.52629 -12.27454 -12.15570 -12.11902 -12.00429 -11.86441 -11.49092 -11.28362 -11.03125 -10.84534 -10.78741 -10.21108 -10.03668 -9.90822 -9.82548 -9.40676 -9.13064 -8.97808 -8.73532 -8.70487 -6.90400 -5.69959 -3.12930 0.39512 0.54379 2.47747 2.80712 3.10816 3.38693 3.44047 3.44730 3.47201 3.98407 4.10730 4.16553 4.29840 4.43066 4.51219 4.58087 4.97903 5.16429 5.16844 5.25920 5.36789 5.41272 5.42314 5.48567 5.51956 5.59895 5.66526 5.67420 5.67703 5.75303 5.81589 5.93811 6.05545 6.18091 6.28658 6.40660 6.67722 6.83636 7.24435 7.49438 7.57791 7.72374 7.78500 8.17281 8.26979 9.15781 9.75866 10.38289 11.34042 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.015922 B = 0.003151 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.158056 B = 8883.956677 C =10113.433491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.379 6.379 3 C 0.055 3.945 4 H 0.068 0.932 5 C 0.143 3.857 6 N -0.600 5.600 7 C -0.221 4.221 8 H 0.081 0.919 9 C -0.011 4.011 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.290 1.290 15 C 0.131 3.869 16 C 0.133 3.867 17 H 0.105 0.895 18 N -0.700 5.700 19 C 0.565 3.435 20 O -0.517 6.517 21 C -0.190 4.190 22 C 0.159 3.841 23 F -0.118 7.118 24 C -0.161 4.161 25 C -0.050 4.050 26 C -0.133 4.133 27 C -0.113 4.113 28 C 0.161 3.839 29 F -0.117 7.117 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.027 0.973 35 H 0.253 0.747 36 H 0.031 0.969 37 H 0.035 0.965 38 H 0.399 0.601 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.701 -3.633 24.407 24.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.297 6.297 3 C -0.004 4.004 4 H 0.086 0.914 5 C 0.017 3.983 6 N -0.328 5.328 7 C -0.349 4.349 8 H 0.099 0.901 9 C -0.206 4.206 10 N -0.571 5.571 11 Si 0.748 3.252 12 H -0.204 1.204 13 H -0.217 1.217 14 H -0.217 1.217 15 C 0.004 3.996 16 C 0.029 3.971 17 H 0.123 0.877 18 N -0.350 5.350 19 C 0.348 3.652 20 O -0.392 6.392 21 C -0.195 4.195 22 C 0.138 3.862 23 F -0.096 7.096 24 C -0.180 4.180 25 C -0.069 4.069 26 C -0.134 4.134 27 C -0.170 4.170 28 C 0.141 3.859 29 F -0.096 7.096 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.131 0.869 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.049 0.951 37 H 0.053 0.947 38 H 0.233 0.767 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.096 0.904 42 H 0.092 0.908 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.904 -4.147 23.815 24.347 hybrid contribution -0.244 1.064 -0.754 1.327 sum -3.148 -3.083 23.060 23.478 Atomic orbital electron populations 1.22710 0.81583 1.01990 0.99887 1.87857 1.19226 1.27599 1.95057 1.24071 0.92433 0.83839 1.00102 0.91449 1.22336 0.94599 0.92110 0.89271 1.44307 1.37081 1.35651 1.15736 1.19153 1.13750 1.06110 0.95919 0.90096 1.24807 0.98541 0.99404 0.97865 1.69755 1.24574 1.38766 1.24049 0.85951 0.77575 0.80727 0.80969 1.20440 1.21657 1.21722 1.21595 0.95880 0.93973 0.88201 1.22285 0.97202 1.00488 0.77113 0.87745 1.45980 1.21877 1.59817 1.07299 1.17691 0.83797 0.79154 0.84528 1.90845 1.28369 1.41434 1.78546 1.20033 1.07253 0.96257 0.96005 1.17323 0.94426 0.85365 0.89047 1.91612 1.79493 1.62911 1.75584 1.21160 1.03269 1.02224 0.91352 1.20885 0.94447 0.91061 1.00464 1.19942 1.03136 0.98363 0.91975 1.20744 1.00398 0.97019 0.98801 1.17126 0.95891 0.82418 0.90493 1.91577 1.86053 1.46221 1.85709 0.90250 0.94856 0.93488 0.86877 0.95466 0.93644 0.95101 0.94690 0.76676 0.83256 0.83478 0.90351 0.90792 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.85 101.05 1.10 1.61 16 2 O -0.38 -7.11 10.52 -35.23 -0.37 -7.49 16 3 C 0.06 1.08 3.18 -24.47 -0.08 1.01 16 4 H 0.07 1.22 7.69 -51.93 -0.40 0.82 16 5 C 0.14 3.51 5.63 -2.41 -0.01 3.50 16 6 N -0.60 -15.66 3.40 -169.94 -0.58 -16.24 16 7 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 8 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 9 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 10 N -0.92 -26.67 10.09 55.49 0.56 -26.11 16 11 Si 0.92 22.09 29.55 -169.99 -5.02 17.07 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 C 0.13 2.94 7.00 -3.06 -0.02 2.92 16 16 C 0.13 2.64 3.00 -66.10 -0.20 2.44 16 17 H 0.10 2.27 7.62 -51.93 -0.40 1.87 16 18 N -0.70 -11.59 5.11 -53.07 -0.27 -11.86 16 19 C 0.57 9.78 6.54 -12.47 -0.08 9.70 16 20 O -0.52 -10.94 16.79 5.29 0.09 -10.85 16 21 C -0.19 -2.58 5.64 -104.86 -0.59 -3.17 16 22 C 0.16 1.88 7.29 -38.97 -0.28 1.59 16 23 F -0.12 -1.64 16.83 2.25 0.04 -1.60 16 24 C -0.16 -1.28 10.01 -39.57 -0.40 -1.67 16 25 C -0.05 -0.32 9.68 -39.53 -0.38 -0.71 16 26 C -0.13 -1.09 5.88 -104.60 -0.62 -1.71 16 27 C -0.11 -0.64 9.83 36.00 0.35 -0.29 16 28 C 0.16 1.88 7.23 -38.96 -0.28 1.60 16 29 F -0.12 -1.55 16.03 2.25 0.04 -1.52 16 30 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.03 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.11 3.05 5.87 -51.93 -0.30 2.74 16 34 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 5.50 8.52 -40.82 -0.35 5.16 16 39 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 40 H 0.15 0.43 8.06 -52.48 -0.42 0.01 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.48 7.63 -51.93 -0.40 0.08 16 43 H 0.08 0.28 8.08 -51.92 -0.42 -0.14 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -33.85 371.69 -7.27 -41.12 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -5.61 Total: 1.84 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -1.74 Total: 10.05 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.29 Total: -54.22 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.28 Total: -18.34 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.07 Total: -3.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.85 -7.27 -41.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082098021.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.039 kcal (2) G-P(sol) polarization free energy of solvation -33.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds