Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38209 * 120.00091 * 2 1 4 4 C 1.38420 * 119.99878 * 179.72351 * 3 2 1 5 5 F 1.35110 * 120.00007 * 180.29819 * 4 3 2 6 6 C 1.38471 * 120.00232 * 0.52858 * 4 3 2 7 7 C 1.50696 * 120.00139 * 179.74611 * 6 4 3 8 8 C 1.50706 * 109.47259 * 279.72686 * 7 6 4 9 9 O 1.21283 * 119.99503 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00081 * 179.72770 * 8 7 6 11 11 C 1.46506 * 119.99968 * 180.02562 * 10 8 7 12 12 H 1.09004 * 110.88510 * 34.28969 * 11 10 8 13 13 C 1.54908 * 110.99923 * 270.41578 * 11 10 8 14 14 N 1.47474 * 104.80937 * 204.94594 * 13 11 10 15 15 C 1.36930 * 125.62920 * 204.05076 * 14 13 11 16 16 H 1.07998 * 120.00329 * 0.02562 * 15 14 13 17 17 C 1.38818 * 119.99724 * 180.02562 * 15 14 13 18 18 N 1.31614 * 120.00040 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99792 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47327 * 89.99782 * 19 17 15 21 21 H 1.48497 * 109.47234 * 209.99909 * 19 17 15 22 22 H 1.48506 * 109.47424 * 329.99593 * 19 17 15 23 23 C 1.47019 * 108.71972 * 24.07088 * 14 13 11 24 24 C 1.54324 * 107.27274 * 358.97587 * 23 14 13 25 25 H 1.09000 * 110.87135 * 219.37291 * 24 23 14 26 26 O 1.42906 * 110.72238 * 96.16940 * 24 23 14 27 27 C 1.38161 * 119.99707 * 359.47395 * 6 4 3 28 28 C 1.38420 * 119.99848 * 179.97438 * 2 1 3 29 29 F 1.35101 * 120.00252 * 0.02562 * 28 2 1 30 30 H 1.09001 * 109.47414 * 270.02499 * 1 2 3 31 31 H 1.09007 * 109.46684 * 30.02238 * 1 2 3 32 32 H 1.09004 * 109.47152 * 150.01910 * 1 2 3 33 33 H 1.08005 * 119.99724 * 359.96242 * 3 2 1 34 34 H 1.09001 * 109.47545 * 159.73026 * 7 6 4 35 35 H 1.08998 * 109.47669 * 39.72969 * 7 6 4 36 36 H 0.96998 * 120.00525 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.36861 * 323.75407 * 13 11 10 38 38 H 1.09001 * 110.37005 * 86.07733 * 13 11 10 39 39 H 0.97002 * 119.99552 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.88465 * 239.55719 * 23 14 13 41 41 H 1.09001 * 109.88169 * 118.38799 * 23 14 13 42 42 H 0.96701 * 113.99858 * 66.47659 * 26 24 23 43 43 H 1.08000 * 119.99790 * 180.27628 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1969 0.0000 4 6 3.5823 1.1969 0.0058 5 9 4.2579 2.3669 0.0119 6 6 4.2747 -0.0023 0.0005 7 6 5.7816 -0.0023 0.0010 8 6 6.2845 0.2442 -1.3981 9 8 5.4966 0.4046 -2.3061 10 7 7.6096 0.2924 -1.6392 11 6 8.0984 0.5326 -2.9993 12 1 7.4323 1.2064 -3.5383 13 6 8.2802 -0.8003 -3.7673 14 7 9.2951 -0.5071 -4.7963 15 6 9.4545 -1.1848 -5.9754 16 1 8.8033 -2.0124 -6.2149 17 6 10.4532 -0.8081 -6.8629 18 7 11.2465 0.2008 -6.5713 19 14 10.6712 -1.7331 -8.4711 20 1 9.8394 -1.0976 -9.5244 21 1 12.0993 -1.6920 -8.8762 22 1 10.2483 -3.1452 -8.2913 23 6 10.1074 0.6328 -4.3466 24 6 9.5491 1.0824 -2.9799 25 1 9.5485 2.1694 -2.8992 26 8 10.2969 0.4983 -1.9113 27 6 3.5839 -1.1988 0.0005 28 6 2.1991 -1.1988 0.0005 29 9 1.5236 -2.3688 0.0005 30 1 -0.3634 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6580 2.1323 -0.0006 34 1 6.1449 -0.9679 0.3527 35 1 6.1448 0.7850 0.6616 36 1 8.2397 0.1688 -0.9122 37 1 8.6368 -1.5802 -3.0946 38 1 7.3419 -1.1005 -4.2337 39 1 11.9441 0.4642 -7.1917 40 1 10.0308 1.4489 -5.0649 41 1 11.1481 0.3269 -4.2393 42 1 11.2110 0.8089 -1.8553 43 1 4.1239 -2.1341 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083665755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = -124.457972 kcal Electronic energy + Delta-G solvation = -29323.211867 eV Core-core repulsion = 24812.099001 eV Total energy + Delta-G solvation = -4511.112866 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.14529 -49.08283 -40.02580 -39.05079 -37.83730 -34.86038 -34.15245 -33.93249 -31.73366 -30.44154 -30.21402 -28.44379 -27.14764 -25.72975 -24.32792 -23.36205 -21.86257 -20.71058 -20.33994 -19.89450 -17.70418 -17.60777 -17.39150 -17.30035 -16.82119 -16.71268 -16.01265 -15.47757 -15.35975 -15.01960 -14.79229 -14.54538 -14.50053 -14.00116 -13.88673 -13.65637 -13.48381 -13.40789 -13.10082 -13.08202 -12.74222 -12.65745 -12.32133 -12.26569 -11.93245 -11.72155 -11.31822 -11.28360 -10.96269 -10.83852 -10.52955 -10.46974 -10.13333 -9.83028 -9.78070 -9.34973 -9.20928 -8.71961 -8.65706 -8.64282 -6.88236 -5.75579 -3.08446 0.68079 0.76675 2.77611 2.96426 3.39583 3.42477 3.45420 3.47831 3.88550 3.92953 4.17465 4.32279 4.47669 4.48973 4.54916 4.80376 4.98510 5.05807 5.09718 5.19060 5.22160 5.28375 5.35772 5.39409 5.53368 5.58500 5.64253 5.70978 5.80626 5.85781 5.86631 5.88902 6.07214 6.21241 6.53715 6.59227 6.65731 6.92471 7.32229 7.43521 7.71277 7.78647 8.05324 8.19106 8.43425 9.17352 9.77408 10.41834 11.36765 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016647 B = 0.002496 C = 0.002306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.579849 B =11216.380141 C =12138.634322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.093 4.093 3 C -0.128 4.128 4 C 0.113 3.887 5 F -0.131 7.131 6 C -0.073 4.073 7 C -0.104 4.104 8 C 0.511 3.489 9 O -0.535 6.535 10 N -0.707 5.707 11 C 0.139 3.861 12 H 0.103 0.897 13 C 0.132 3.868 14 N -0.601 5.601 15 C -0.224 4.224 16 H 0.079 0.921 17 C -0.010 4.010 18 N -0.927 5.927 19 Si 0.915 3.085 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.155 3.845 24 C 0.068 3.932 25 H 0.061 0.939 26 O -0.568 6.568 27 C -0.109 4.109 28 C 0.087 3.913 29 F -0.134 7.134 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.407 0.593 37 H 0.026 0.974 38 H 0.044 0.956 39 H 0.252 0.748 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.380 0.620 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.851 2.527 19.448 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.094 4.094 3 C -0.147 4.147 4 C 0.094 3.906 5 F -0.109 7.109 6 C -0.074 4.074 7 C -0.144 4.144 8 C 0.296 3.704 9 O -0.411 6.411 10 N -0.358 5.358 11 C 0.034 3.966 12 H 0.121 0.879 13 C 0.005 3.995 14 N -0.328 5.328 15 C -0.352 4.352 16 H 0.097 0.903 17 C -0.206 4.206 18 N -0.575 5.575 19 Si 0.745 3.255 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.029 3.971 24 C 0.008 3.992 25 H 0.079 0.921 26 O -0.374 6.374 27 C -0.128 4.128 28 C 0.067 3.933 29 F -0.113 7.113 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.243 0.757 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.227 0.773 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.830 2.340 18.691 24.605 hybrid contribution 1.171 -0.203 -0.743 1.402 sum -14.659 2.137 17.948 23.272 Atomic orbital electron populations 1.20756 0.89453 1.03827 1.03045 1.19719 0.97297 0.91059 1.01316 1.20818 0.91950 0.98821 1.03072 1.17411 0.89853 0.81074 1.02297 1.91518 1.80221 1.45566 1.93619 1.19120 0.95135 0.91459 1.01724 1.20621 0.91292 1.05878 0.96561 1.20307 0.82758 0.77134 0.90158 1.90742 1.55242 1.49067 1.46087 1.45733 1.06317 1.72463 1.11293 1.22347 0.92861 0.99172 0.82266 0.87914 1.21835 0.93038 0.93671 0.91004 1.44289 1.34663 1.35828 1.17985 1.19093 1.12948 1.10330 0.92835 0.90279 1.24795 0.98152 0.98636 0.98979 1.69912 1.21862 1.29187 1.36539 0.86067 0.76985 0.79108 0.83316 1.21535 1.21666 1.20656 1.21856 0.95086 0.91095 0.89048 1.23510 0.90943 0.95241 0.89511 0.92119 1.86238 1.27779 1.71142 1.52250 1.20857 0.92176 0.98750 1.01020 1.17384 0.89748 0.81119 1.05000 1.91495 1.80127 1.45698 1.93979 0.90442 0.90605 0.90751 0.83736 0.87081 0.87310 0.75744 0.95670 0.93807 0.93721 0.92662 0.92875 0.77264 0.83628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.83 36.01 0.35 -0.43 16 2 C -0.09 -0.89 5.88 -104.56 -0.62 -1.51 16 3 C -0.13 -1.26 9.68 -39.52 -0.38 -1.64 16 4 C 0.11 1.33 7.14 -39.43 -0.28 1.05 16 5 F -0.13 -1.66 16.66 2.25 0.04 -1.62 16 6 C -0.07 -0.83 4.42 -104.57 -0.46 -1.29 16 7 C -0.10 -1.07 5.56 -29.03 -0.16 -1.23 16 8 C 0.51 7.62 7.82 -10.98 -0.09 7.54 16 9 O -0.53 -10.24 15.65 5.56 0.09 -10.15 16 10 N -0.71 -10.51 5.18 -51.73 -0.27 -10.77 16 11 C 0.14 2.58 3.25 -65.78 -0.21 2.37 16 12 H 0.10 2.06 7.63 -51.93 -0.40 1.67 16 13 C 0.13 2.91 6.92 -2.50 -0.02 2.89 16 14 N -0.60 -15.54 3.40 -170.04 -0.58 -16.12 16 15 C -0.22 -6.34 10.28 -15.06 -0.15 -6.49 16 16 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 17 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 18 N -0.93 -26.90 10.31 55.49 0.57 -26.32 16 19 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.15 3.62 5.14 -3.07 -0.02 3.61 16 24 C 0.07 1.21 4.20 -24.90 -0.10 1.10 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 26 O -0.57 -8.80 12.14 -35.23 -0.43 -9.22 16 27 C -0.11 -1.16 9.65 -39.52 -0.38 -1.54 16 28 C 0.09 0.93 7.24 -39.43 -0.29 0.65 16 29 F -0.13 -1.47 16.47 2.25 0.04 -1.44 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.43 8.09 -51.92 -0.42 0.01 16 32 H 0.07 0.52 7.64 -51.93 -0.40 0.13 16 33 H 0.14 1.09 8.06 -52.48 -0.42 0.67 16 34 H 0.11 0.84 8.00 -51.93 -0.42 0.43 16 35 H 0.11 0.91 7.94 -51.93 -0.41 0.50 16 36 H 0.41 5.17 7.57 -40.82 -0.31 4.86 16 37 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.06 1.43 7.38 -51.93 -0.38 1.04 16 41 H 0.05 1.35 7.43 -51.93 -0.39 0.97 16 42 H 0.38 4.53 9.12 45.56 0.42 4.95 16 43 H 0.15 1.29 8.04 -52.49 -0.42 0.87 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -34.13 368.76 -7.69 -41.83 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -4.78 Total: 6.31 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: -2.90 Total: 4.68 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: -0.27 Total: -53.22 kcal Atomic # 8 Polarization: -19.03 SS G_CDS: -0.34 Total: -19.38 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.07 Total: -3.06 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.13 -7.69 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083665755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.631 kcal (2) G-P(sol) polarization free energy of solvation -34.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds