Wall clock time and date at job start Sat Apr 11 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38231 * 119.83790 * 2 1 4 4 C 1.38275 * 120.14427 * 179.69753 * 3 2 1 5 5 F 1.35102 * 120.08472 * 180.27159 * 4 3 2 6 6 C 1.39840 * 119.82797 * 0.57747 * 4 3 2 7 7 C 1.47704 * 120.15348 * 179.70105 * 6 4 3 8 8 O 1.21570 * 119.99722 * 359.72147 * 7 6 4 9 9 N 1.34773 * 119.99986 * 179.71818 * 7 6 4 10 10 C 1.46498 * 119.99898 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.45931 * 34.97442 * 10 9 7 12 12 C 1.53039 * 109.46087 * 275.00395 * 10 9 7 13 13 C 1.53194 * 109.31275 * 178.62938 * 12 10 9 14 14 N 1.46924 * 108.77561 * 54.63430 * 13 12 10 15 15 C 1.36942 * 120.62968 * 126.11810 * 14 13 12 16 16 H 1.07992 * 119.99875 * 332.70380 * 15 14 13 17 17 C 1.38807 * 119.99880 * 152.70010 * 15 14 13 18 18 N 1.31624 * 120.00086 * 159.47314 * 17 15 14 19 19 Si 1.86803 * 120.00386 * 339.47592 * 17 15 14 20 20 H 1.48500 * 109.47214 * 93.00133 * 19 17 15 21 21 H 1.48499 * 109.47277 * 213.00605 * 19 17 15 22 22 H 1.48503 * 109.46657 * 333.00776 * 19 17 15 23 23 C 1.46926 * 118.73914 * 306.38788 * 14 13 12 24 24 C 1.53042 * 109.44801 * 154.94464 * 10 9 7 25 25 H 1.09004 * 109.49082 * 301.35996 * 24 10 9 26 26 O 1.42888 * 109.50144 * 61.42718 * 24 10 9 27 27 C 1.39615 * 119.69315 * 359.41633 * 6 4 3 28 28 C 1.38110 * 119.84867 * 0.28959 * 27 6 4 29 29 F 1.35107 * 119.91549 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.47484 * 270.02122 * 1 2 3 31 31 H 1.08997 * 109.47548 * 30.02752 * 1 2 3 32 32 H 1.09006 * 109.46981 * 150.02765 * 1 2 3 33 33 H 1.08004 * 119.93186 * 359.97104 * 3 2 1 34 34 H 0.97003 * 120.00214 * 0.02562 * 9 7 6 35 35 H 1.08995 * 109.50155 * 58.67817 * 12 10 9 36 36 H 1.09006 * 109.52485 * 298.59585 * 12 10 9 37 37 H 1.09007 * 109.58516 * 294.84393 * 13 12 10 38 38 H 1.09000 * 109.58479 * 174.42470 * 13 12 10 39 39 H 0.96999 * 120.00261 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.58351 * 173.39714 * 23 14 13 41 41 H 1.08994 * 109.58658 * 293.82647 * 23 14 13 42 42 H 0.96701 * 114.00250 * 180.02562 * 26 24 10 43 43 H 1.08000 * 120.07667 * 180.25640 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1991 0.0000 4 6 3.5775 1.2065 0.0063 5 9 4.2484 2.3791 0.0118 6 6 4.2796 -0.0029 0.0005 7 6 5.7566 -0.0033 0.0005 8 8 6.3647 1.0493 0.0005 9 7 6.4301 -1.1707 0.0006 10 6 7.8951 -1.1711 0.0001 11 1 8.2587 -0.3289 0.5888 12 6 8.4044 -1.0459 -1.4376 13 6 9.9360 -1.0122 -1.4314 14 7 10.4321 -2.1960 -0.7164 15 6 11.3355 -3.0395 -1.3061 16 1 11.3678 -3.1294 -2.3818 17 6 12.2097 -3.7787 -0.5212 18 7 12.7825 -4.8576 -1.0115 19 14 12.5731 -3.2426 1.2309 20 1 11.6459 -3.9339 2.1625 21 1 13.9742 -3.5939 1.5756 22 1 12.3879 -1.7738 1.3476 23 6 9.9361 -2.4609 0.6410 24 6 8.4045 -2.4784 0.6114 25 1 8.0217 -2.5783 1.6271 26 8 7.9553 -3.5812 -0.1783 27 6 3.5779 -1.2099 0.0007 28 6 2.1968 -1.2022 0.0005 29 9 1.5165 -2.3694 0.0002 30 1 -0.3634 0.0004 1.0276 31 1 -0.3634 0.8897 -0.5142 32 1 -0.3633 -0.8903 -0.5134 33 1 1.6510 2.1322 -0.0005 34 1 5.9449 -2.0107 0.0003 35 1 8.0222 -0.1261 -1.8803 36 1 8.0617 -1.9003 -2.0213 37 1 10.2796 -0.1094 -0.9262 38 1 10.3059 -1.0228 -2.4567 39 1 13.3931 -5.3744 -0.4629 40 1 10.3061 -3.4274 0.9830 41 1 10.2796 -1.6763 1.3151 42 1 8.2416 -4.4439 0.1518 43 1 4.1139 -2.1476 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090337755.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:34 Heat of formation + Delta-G solvation = -119.288938 kcal Electronic energy + Delta-G solvation = -29935.425997 eV Core-core repulsion = 25424.537277 eV Total energy + Delta-G solvation = -4510.888720 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.35311 -49.13708 -40.38278 -39.06681 -38.02812 -35.05041 -34.59999 -33.57090 -32.08889 -30.68760 -30.16708 -29.46220 -27.98734 -25.16053 -23.69415 -23.19662 -22.72342 -21.70135 -20.62450 -19.80030 -18.48875 -17.76000 -17.49890 -17.34113 -16.40023 -16.26213 -16.25085 -15.69466 -15.63425 -15.16442 -14.93624 -14.73257 -14.60059 -14.34676 -14.18605 -13.84990 -13.76986 -13.64961 -13.38165 -13.03737 -12.75768 -12.49911 -12.45264 -12.42575 -11.97339 -11.87520 -11.72889 -11.51148 -11.02709 -10.74931 -10.48552 -10.32141 -10.16842 -9.95078 -9.62496 -9.53521 -9.44549 -9.01725 -8.83885 -8.66157 -7.00989 -5.98412 -3.33510 0.12581 0.49852 2.39616 2.97703 3.22359 3.25125 3.44172 3.46184 3.63029 3.67965 3.98736 4.10933 4.43016 4.46320 4.55060 4.62218 4.87848 4.90315 4.98748 5.03640 5.11044 5.23474 5.28014 5.31315 5.42119 5.43834 5.55756 5.59717 5.62459 5.69628 5.93395 6.02439 6.20822 6.24179 6.25207 6.35993 6.42622 6.60804 6.65757 6.93533 7.46972 7.88632 8.05974 8.13370 8.29918 8.89202 9.67184 10.04235 11.17605 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021896 B = 0.002744 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.467303 B =10202.257412 C =10886.045059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.140 4.140 4 C 0.156 3.844 5 F -0.108 7.108 6 C -0.146 4.146 7 C 0.554 3.446 8 O -0.522 6.522 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.095 0.905 12 C -0.139 4.139 13 C 0.151 3.849 14 N -0.596 5.596 15 C -0.251 4.251 16 H 0.086 0.914 17 C 0.021 3.979 18 N -0.908 5.908 19 Si 0.879 3.121 20 H -0.291 1.291 21 H -0.302 1.302 22 H -0.270 1.270 23 C 0.098 3.902 24 C 0.082 3.918 25 H 0.049 0.951 26 O -0.554 6.554 27 C -0.087 4.087 28 C 0.080 3.920 29 F -0.129 7.129 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.402 0.598 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.068 0.932 39 H 0.262 0.738 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.380 0.620 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.408 8.254 4.387 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.068 4.068 3 C -0.159 4.159 4 C 0.135 3.865 5 F -0.086 7.086 6 C -0.150 4.150 7 C 0.339 3.661 8 O -0.399 6.399 9 N -0.361 5.361 10 C 0.058 3.942 11 H 0.113 0.887 12 C -0.179 4.179 13 C 0.025 3.975 14 N -0.319 5.319 15 C -0.380 4.380 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.551 5.551 19 Si 0.710 3.290 20 H -0.219 1.219 21 H -0.230 1.230 22 H -0.195 1.195 23 C -0.029 4.029 24 C 0.020 3.980 25 H 0.067 0.933 26 O -0.360 6.360 27 C -0.107 4.107 28 C 0.060 3.940 29 F -0.108 7.108 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.170 0.830 34 H 0.238 0.762 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.072 0.928 40 H 0.099 0.901 41 H 0.052 0.948 42 H 0.227 0.773 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -25.056 9.356 4.032 27.048 hybrid contribution 0.369 -0.775 1.415 1.655 sum -24.688 8.581 5.448 26.698 Atomic orbital electron populations 1.20842 0.88984 1.04157 1.03578 1.19941 0.97646 0.90937 0.98300 1.20895 0.91668 0.99171 1.04160 1.17643 0.89555 0.81082 0.98243 1.91630 1.80302 1.44092 1.92601 1.19979 0.94668 0.92320 1.08082 1.17865 0.85922 0.84657 0.77609 1.90858 1.69143 1.30781 1.49122 1.46067 1.08089 1.07948 1.73975 1.21047 0.77519 0.96897 0.98702 0.88738 1.22326 0.98614 1.01726 0.95257 1.20922 0.90515 0.88868 0.97199 1.44213 1.48659 1.25804 1.13201 1.18921 1.09233 1.16659 0.93157 0.89606 1.25276 0.97635 0.97234 0.97607 1.69837 1.32769 1.15113 1.37360 0.87021 0.76589 0.79508 0.85931 1.21921 1.23030 1.19505 1.22060 0.91269 1.00718 0.88845 1.22571 0.96507 0.86510 0.92416 0.93310 1.86373 1.77027 1.16635 1.55918 1.21222 0.92484 0.98579 0.98403 1.17273 0.89448 0.81474 1.05796 1.91532 1.79704 1.45577 1.93981 0.89897 0.90248 0.90392 0.82974 0.76211 0.92298 0.90636 0.95638 0.91372 0.92783 0.90121 0.94758 0.77295 0.83116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.82 36.01 0.35 -0.20 16 2 C -0.07 -0.49 5.89 -104.49 -0.62 -1.11 16 3 C -0.14 -1.10 9.66 -39.57 -0.38 -1.48 16 4 C 0.16 1.73 7.28 -38.97 -0.28 1.45 16 5 F -0.11 -1.46 15.55 2.25 0.04 -1.43 16 6 C -0.15 -1.70 5.88 -104.92 -0.62 -2.32 16 7 C 0.55 8.09 7.73 -12.40 -0.10 8.00 16 8 O -0.52 -9.48 15.00 5.30 0.08 -9.40 16 9 N -0.71 -9.75 5.00 -54.76 -0.27 -10.03 16 10 C 0.16 2.64 2.20 -67.89 -0.15 2.49 16 11 H 0.09 1.64 7.57 -51.93 -0.39 1.24 16 12 C -0.14 -2.46 5.51 -26.61 -0.15 -2.61 16 13 C 0.15 3.04 6.52 -3.71 -0.02 3.02 16 14 N -0.60 -13.76 2.71 -172.32 -0.47 -14.23 16 15 C -0.25 -6.86 10.03 -15.06 -0.15 -7.01 16 16 H 0.09 2.54 8.05 -52.49 -0.42 2.11 16 17 C 0.02 0.59 5.23 -17.43 -0.09 0.50 16 18 N -0.91 -27.21 13.97 55.49 0.78 -26.44 16 19 Si 0.88 21.65 24.35 -169.99 -4.14 17.51 16 20 H -0.29 -6.77 6.63 56.52 0.37 -6.40 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.59 6.63 56.52 0.37 -6.22 16 23 C 0.10 2.01 3.85 -3.71 -0.01 2.00 16 24 C 0.08 1.35 3.38 -26.61 -0.09 1.26 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 O -0.55 -9.06 12.08 -35.23 -0.43 -9.49 16 27 C -0.09 -0.81 9.52 -39.11 -0.37 -1.19 16 28 C 0.08 0.69 7.23 -39.49 -0.29 0.40 16 29 F -0.13 -1.16 16.45 2.25 0.04 -1.12 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.08 0.37 7.62 -51.93 -0.40 -0.03 16 33 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.40 4.68 6.29 -40.82 -0.26 4.42 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.43 7.61 -51.93 -0.40 1.03 16 37 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 1.77 4.49 -51.93 -0.23 1.54 16 41 H 0.03 0.70 7.09 -51.93 -0.37 0.34 16 42 H 0.38 5.41 9.08 45.56 0.41 5.83 16 43 H 0.15 1.18 6.40 -52.49 -0.34 0.84 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -32.98 354.38 -6.52 -39.50 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.52 Total: 6.58 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -2.96 Total: 3.20 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.03 Total: -50.69 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.35 Total: -18.89 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.07 Total: -2.55 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.14 Total: 17.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.98 -6.52 -39.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090337755.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.787 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds