Wall clock time and date at job start Sat Apr 11 2020 05:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38235 * 119.84105 * 2 1 4 4 C 1.38264 * 120.14687 * 179.97438 * 3 2 1 5 5 F 1.35102 * 120.08334 * 180.02562 * 4 3 2 6 6 C 1.39839 * 119.83201 * 0.02562 * 4 3 2 7 7 C 1.47700 * 120.15179 * 180.02562 * 6 4 3 8 8 O 1.21568 * 120.00398 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99917 * 179.97438 * 7 6 4 10 10 C 1.46499 * 119.99985 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.46208 * 324.97375 * 10 9 7 12 12 C 1.53044 * 109.46007 * 84.93549 * 10 9 7 13 13 C 1.52755 * 109.38132 * 181.25927 * 12 10 9 14 14 N 1.46923 * 109.00900 * 305.58408 * 13 12 10 15 15 C 1.36943 * 120.62930 * 233.58508 * 14 13 12 16 16 H 1.08004 * 119.99477 * 152.17479 * 15 14 13 17 17 C 1.38811 * 119.99955 * 332.17173 * 15 14 13 18 18 N 1.31614 * 120.00254 * 342.76805 * 17 15 14 19 19 Si 1.86800 * 119.99811 * 162.76720 * 17 15 14 20 20 H 1.48500 * 109.47142 * 179.97438 * 19 17 15 21 21 H 1.48496 * 109.47443 * 300.00287 * 19 17 15 22 22 H 1.48507 * 109.46844 * 60.00261 * 19 17 15 23 23 C 1.46927 * 118.73893 * 53.31139 * 14 13 12 24 24 C 1.53046 * 109.45791 * 204.99746 * 10 9 7 25 25 H 1.09004 * 109.49497 * 58.66620 * 24 10 9 26 26 O 1.42894 * 109.49909 * 298.57021 * 24 10 9 27 27 C 1.39611 * 119.69242 * 0.27193 * 6 4 3 28 28 C 1.38112 * 119.84981 * 359.42830 * 27 6 4 29 29 F 1.35097 * 119.91949 * 180.29576 * 28 27 6 30 30 H 1.09000 * 109.47363 * 90.00352 * 1 2 3 31 31 H 1.09002 * 109.46873 * 209.99707 * 1 2 3 32 32 H 1.08996 * 109.47454 * 329.99976 * 1 2 3 33 33 H 1.08004 * 119.92080 * 0.02562 * 3 2 1 34 34 H 0.97006 * 119.99849 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.49256 * 301.33300 * 12 10 9 36 36 H 1.08998 * 109.49776 * 61.39965 * 12 10 9 37 37 H 1.09005 * 109.50719 * 185.70148 * 13 12 10 38 38 H 1.09006 * 109.43430 * 65.42411 * 13 12 10 39 39 H 0.97000 * 119.99965 * 179.97438 * 18 17 15 40 40 H 1.09004 * 109.58525 * 66.43417 * 23 14 13 41 41 H 1.08995 * 109.58430 * 186.71314 * 23 14 13 42 42 H 0.96705 * 113.99942 * 180.16232 * 26 24 10 43 43 H 1.08006 * 120.07849 * 179.72601 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1991 0.0000 4 6 3.5774 1.2064 0.0005 5 9 4.2484 2.3791 0.0011 6 6 4.2795 -0.0029 0.0005 7 6 5.7565 -0.0033 0.0017 8 8 6.3647 1.0493 0.0021 9 7 6.4301 -1.1707 0.0022 10 6 7.8951 -1.1711 0.0028 11 1 8.2587 -0.3297 -0.5871 12 6 8.4045 -1.0435 1.4403 13 6 9.9317 -1.0125 1.4361 14 7 10.4324 -2.1942 0.7209 15 6 11.3398 -3.0338 1.3100 16 1 11.3737 -4.0758 1.0280 17 6 12.2161 -2.5455 2.2694 18 7 12.4196 -1.2495 2.3762 19 14 13.1066 -3.7277 3.4090 20 1 13.9783 -2.9608 4.3349 21 1 12.1121 -4.5033 4.1930 22 1 13.9379 -4.6590 2.6046 23 6 9.9363 -2.4614 -0.6361 24 6 8.4049 -2.4792 -0.6066 25 1 8.0226 -2.5806 -1.6223 26 8 7.9558 -3.5809 0.1849 27 6 3.5779 -1.2099 -0.0058 28 6 2.1968 -1.2022 0.0000 29 9 1.5165 -2.3694 0.0000 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6509 2.1322 0.0004 34 1 5.9449 -2.0106 0.0022 35 1 8.0219 -0.1230 1.8814 36 1 8.0615 -1.8971 2.0249 37 1 10.2988 -1.0238 2.4624 38 1 10.2748 -0.1083 0.9331 39 1 13.0317 -0.9084 3.0469 40 1 10.2798 -1.6779 -1.3116 41 1 10.3086 -3.4272 -0.9776 42 1 8.2447 -4.4438 -0.1422 43 1 4.1139 -2.1476 -0.0103 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090337757.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:36 Heat of formation + Delta-G solvation = -124.654800 kcal Electronic energy + Delta-G solvation = -29833.651443 eV Core-core repulsion = 25322.530042 eV Total energy + Delta-G solvation = -4511.121401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.31414 -49.06182 -40.26710 -38.93692 -37.84705 -34.95811 -34.45376 -33.48227 -31.79290 -30.61404 -30.01794 -28.91461 -27.85106 -25.14101 -23.63239 -23.01627 -22.30686 -21.74572 -20.46108 -19.61658 -18.35019 -17.68902 -17.43575 -17.14329 -16.34103 -16.18103 -16.04516 -15.65156 -15.58527 -14.90193 -14.70011 -14.59179 -14.54838 -14.21766 -13.97522 -13.80352 -13.64679 -13.58266 -13.18532 -12.97791 -12.84254 -12.43411 -12.12064 -12.10036 -11.87683 -11.77541 -11.25515 -11.03976 -10.84281 -10.72839 -10.32904 -10.25637 -10.05569 -9.95086 -9.65127 -9.55724 -9.36194 -8.93526 -8.72132 -8.41338 -6.68557 -5.78848 -3.21331 0.19397 0.55610 2.47715 3.09463 3.34945 3.38502 3.44936 3.45881 3.68487 3.74661 4.04758 4.16297 4.46635 4.51493 4.62737 4.72151 4.92458 5.04525 5.07530 5.22427 5.29643 5.32812 5.39431 5.46471 5.51252 5.57735 5.60723 5.68036 5.72893 5.92753 6.19572 6.29505 6.33960 6.45695 6.56048 6.61317 6.81268 6.87908 7.39282 7.58625 7.68121 7.77988 8.05045 8.25469 8.43776 9.19176 9.82078 10.38063 11.29688 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.020364 B = 0.002633 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.661278 B =10631.508705 C =11247.234179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.140 4.140 4 C 0.156 3.844 5 F -0.108 7.108 6 C -0.145 4.145 7 C 0.552 3.448 8 O -0.520 6.520 9 N -0.710 5.710 10 C 0.162 3.838 11 H 0.093 0.907 12 C -0.144 4.144 13 C 0.174 3.826 14 N -0.581 5.581 15 C -0.251 4.251 16 H 0.064 0.936 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.903 3.097 20 H -0.291 1.291 21 H -0.284 1.284 22 H -0.283 1.283 23 C 0.119 3.881 24 C 0.081 3.919 25 H 0.046 0.954 26 O -0.556 6.556 27 C -0.088 4.088 28 C 0.079 3.921 29 F -0.130 7.130 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.152 0.848 34 H 0.400 0.600 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.020 0.980 39 H 0.255 0.745 40 H 0.028 0.972 41 H 0.062 0.938 42 H 0.373 0.627 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.014 0.490 -7.162 25.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.159 4.159 4 C 0.135 3.865 5 F -0.086 7.086 6 C -0.149 4.149 7 C 0.337 3.663 8 O -0.397 6.397 9 N -0.361 5.361 10 C 0.058 3.942 11 H 0.111 0.889 12 C -0.184 4.184 13 C 0.047 3.953 14 N -0.304 5.304 15 C -0.381 4.381 16 H 0.082 0.918 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.733 3.267 20 H -0.217 1.217 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.009 4.009 24 C 0.020 3.980 25 H 0.064 0.936 26 O -0.360 6.360 27 C -0.107 4.107 28 C 0.059 3.941 29 F -0.109 7.109 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.235 0.765 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.080 0.920 42 H 0.220 0.780 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -23.664 1.822 -6.694 24.660 hybrid contribution 0.546 -1.449 0.288 1.575 sum -23.118 0.373 -6.406 23.992 Atomic orbital electron populations 1.20833 0.89031 1.04114 1.03529 1.19928 0.97600 0.90945 0.98481 1.20891 0.91679 0.99152 1.04176 1.17649 0.89546 0.81133 0.98205 1.91634 1.80300 1.44059 1.92579 1.20023 0.94818 0.92292 1.07757 1.17860 0.85843 0.84767 0.77818 1.90869 1.69080 1.30775 1.48962 1.46114 1.08326 1.07739 1.73925 1.21101 0.77063 0.96665 0.99321 0.88860 1.22433 1.00675 1.00936 0.94359 1.20694 0.86791 0.88185 0.99588 1.43892 1.47958 1.28434 1.10086 1.19067 1.09810 0.90161 1.19048 0.91832 1.25034 0.97289 0.95731 1.01558 1.70023 1.37698 1.11338 1.35473 0.86360 0.79175 0.80246 0.80891 1.21653 1.21025 1.20945 1.21530 0.90429 0.99631 0.89315 1.22634 0.97140 0.86283 0.91947 0.93579 1.86437 1.77090 1.16443 1.56077 1.21212 0.92438 0.98576 0.98510 1.17268 0.89447 0.81437 1.05916 1.91522 1.79723 1.45622 1.94012 0.89939 0.90438 0.90277 0.82999 0.76493 0.92897 0.91496 0.89089 0.96209 0.93495 0.95466 0.91957 0.78021 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.82 36.00 0.35 -0.24 16 2 C -0.07 -0.53 5.89 -104.49 -0.62 -1.15 16 3 C -0.14 -1.19 9.66 -39.57 -0.38 -1.57 16 4 C 0.16 1.85 7.28 -38.97 -0.28 1.57 16 5 F -0.11 -1.56 15.55 2.25 0.04 -1.52 16 6 C -0.14 -1.80 5.88 -104.92 -0.62 -2.42 16 7 C 0.55 8.72 7.73 -12.39 -0.10 8.62 16 8 O -0.52 -10.25 15.00 5.31 0.08 -10.17 16 9 N -0.71 -10.50 5.00 -54.75 -0.27 -10.77 16 10 C 0.16 2.85 2.20 -67.88 -0.15 2.70 16 11 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 12 C -0.14 -2.96 5.49 -26.83 -0.15 -3.11 16 13 C 0.17 4.25 5.28 -3.94 -0.02 4.23 16 14 N -0.58 -14.24 2.94 -172.58 -0.51 -14.74 16 15 C -0.25 -6.76 9.58 -15.06 -0.14 -6.91 16 16 H 0.06 1.66 7.89 -52.48 -0.41 1.24 16 17 C 0.00 0.07 4.91 -17.43 -0.09 -0.01 16 18 N -0.90 -26.29 11.19 55.49 0.62 -25.67 16 19 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.12 2.33 6.16 -3.71 -0.02 2.31 16 24 C 0.08 1.32 3.38 -26.61 -0.09 1.23 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 O -0.56 -8.72 12.09 -35.23 -0.43 -9.14 16 27 C -0.09 -0.87 9.52 -39.12 -0.37 -1.24 16 28 C 0.08 0.72 7.23 -39.49 -0.29 0.43 16 29 F -0.13 -1.21 16.45 2.25 0.04 -1.17 16 30 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.39 7.62 -51.93 -0.40 0.00 16 32 H 0.08 0.28 8.08 -51.93 -0.42 -0.13 16 33 H 0.15 0.89 8.06 -52.48 -0.42 0.47 16 34 H 0.40 4.94 6.29 -40.82 -0.26 4.68 16 35 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 36 H 0.07 1.44 7.61 -51.93 -0.40 1.04 16 37 H 0.09 2.50 6.04 -51.93 -0.31 2.19 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 42 H 0.37 4.59 9.08 45.56 0.41 5.00 16 43 H 0.15 1.25 6.40 -52.48 -0.34 0.91 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -32.96 360.76 -7.58 -40.54 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.59 Total: 6.14 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -2.96 Total: 4.44 kcal Atomic # 7 Polarization: -51.03 SS G_CDS: -0.16 Total: -51.19 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.35 Total: -19.31 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.07 Total: -2.69 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.96 -7.58 -40.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090337757.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.114 kcal (2) G-P(sol) polarization free energy of solvation -32.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds