Wall clock time and date at job start Sat Apr 11 2020 05:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38235 * 119.83825 * 2 1 4 4 C 1.38270 * 120.14238 * 180.02562 * 3 2 1 5 5 F 1.35102 * 120.07987 * 180.02562 * 4 3 2 6 6 C 1.39844 * 119.83526 * 0.02562 * 4 3 2 7 7 C 1.47693 * 120.15508 * 180.02562 * 6 4 3 8 8 O 1.21569 * 120.00143 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99840 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00071 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.45661 * 35.03091 * 10 9 7 12 12 C 1.53034 * 109.46041 * 275.06636 * 10 9 7 13 13 C 1.53196 * 109.30983 * 178.61228 * 12 10 9 14 14 N 1.46925 * 108.77591 * 54.63799 * 13 12 10 15 15 C 1.36934 * 120.63293 * 126.41271 * 14 13 12 16 16 H 1.08000 * 119.99907 * 332.78614 * 15 14 13 17 17 C 1.38807 * 120.00395 * 152.78633 * 15 14 13 18 18 N 1.31622 * 120.00354 * 159.74496 * 17 15 14 19 19 Si 1.86804 * 119.99868 * 339.74809 * 17 15 14 20 20 H 1.48498 * 109.47404 * 94.89217 * 19 17 15 21 21 H 1.48503 * 109.47213 * 214.89509 * 19 17 15 22 22 H 1.48500 * 109.46964 * 334.89361 * 19 17 15 23 23 C 1.46926 * 118.73569 * 306.38985 * 14 13 12 24 24 C 1.53040 * 109.46098 * 154.99523 * 10 9 7 25 25 H 1.09007 * 109.49359 * 61.40181 * 24 10 9 26 26 O 1.42901 * 109.49777 * 301.34480 * 24 10 9 27 27 C 1.39617 * 119.68686 * 0.26490 * 6 4 3 28 28 C 1.38109 * 119.85195 * 359.45576 * 27 6 4 29 29 F 1.35104 * 119.91571 * 180.29522 * 28 27 6 30 30 H 1.09003 * 109.46877 * 90.00857 * 1 2 3 31 31 H 1.09000 * 109.46706 * 209.99845 * 1 2 3 32 32 H 1.08997 * 109.47310 * 330.00058 * 1 2 3 33 33 H 1.08001 * 119.92636 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00334 * 359.97438 * 9 7 6 35 35 H 1.08994 * 109.50191 * 298.56400 * 12 10 9 36 36 H 1.08999 * 109.49697 * 58.66436 * 12 10 9 37 37 H 1.09003 * 109.58492 * 174.42209 * 13 12 10 38 38 H 1.08999 * 109.58749 * 294.84318 * 13 12 10 39 39 H 0.96997 * 119.99693 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.58609 * 293.82119 * 23 14 13 41 41 H 1.09006 * 109.58305 * 173.39725 * 23 14 13 42 42 H 0.96701 * 113.99740 * 179.97438 * 26 24 10 43 43 H 1.08002 * 120.07204 * 179.70029 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1948 1.1991 0.0000 4 6 3.5775 1.2064 -0.0005 5 9 4.2484 2.3791 0.0000 6 6 4.2796 -0.0029 -0.0016 7 6 5.7566 -0.0034 -0.0016 8 8 6.3647 1.0493 -0.0012 9 7 6.4301 -1.1708 -0.0021 10 6 7.8951 -1.1712 -0.0027 11 1 8.2587 -0.3299 0.5873 12 6 8.4044 -1.0437 -1.4402 13 6 9.9360 -1.0096 -1.4338 14 7 10.4324 -2.1944 -0.7207 15 6 11.3405 -3.0334 -1.3093 16 1 11.3785 -3.1188 -2.3852 17 6 12.2122 -3.7743 -0.5232 18 7 12.7940 -4.8468 -1.0168 19 14 12.5596 -3.2492 1.2356 20 1 11.6596 -3.9857 2.1591 21 1 13.9731 -3.5548 1.5734 22 1 12.3223 -1.7897 1.3724 23 6 9.9363 -2.4615 0.6362 24 6 8.4048 -2.4793 0.6067 25 1 8.0618 -3.3197 0.0033 26 8 7.9035 -2.6122 1.9383 27 6 3.5779 -1.2099 -0.0078 28 6 2.1968 -1.2022 -0.0013 29 9 1.5165 -2.3695 -0.0012 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6509 2.1322 -0.0004 34 1 5.9449 -2.0107 -0.0021 35 1 8.0620 -1.8975 -2.0247 36 1 8.0219 -0.1232 -1.8813 37 1 10.3059 -1.0186 -2.4591 38 1 10.2794 -0.1076 -0.9272 39 1 13.4028 -5.3646 -0.4673 40 1 10.2797 -1.6780 1.3117 41 1 10.3065 -3.4286 0.9768 42 1 8.1871 -3.4209 2.3864 43 1 4.1139 -2.1475 -0.0135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090337759.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:38 Heat of formation + Delta-G solvation = -121.616448 kcal Electronic energy + Delta-G solvation = -29842.152541 eV Core-core repulsion = 25331.162893 eV Total energy + Delta-G solvation = -4510.989648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.35038 -49.12085 -40.36860 -39.05797 -37.99614 -35.56889 -34.64336 -33.57378 -32.16562 -30.68592 -30.22281 -29.28021 -27.98270 -25.19997 -23.68922 -23.25494 -22.73009 -21.70169 -20.65311 -19.90688 -18.50986 -17.75969 -17.48922 -17.05460 -16.88785 -16.38747 -16.24351 -16.07578 -15.68037 -15.04385 -14.88863 -14.71496 -14.60169 -14.38636 -13.99216 -13.83844 -13.71266 -13.61887 -13.43086 -13.02354 -12.89875 -12.52499 -12.47866 -12.44067 -12.20331 -11.90743 -11.86369 -11.44130 -11.06029 -10.93589 -10.54848 -10.41453 -10.11623 -9.81483 -9.69148 -9.61027 -9.54518 -9.02953 -8.86370 -8.73422 -7.12051 -6.04698 -3.42411 0.14132 0.50941 2.41724 2.98301 3.21617 3.27717 3.42582 3.45695 3.63771 3.69041 3.99570 4.11138 4.25566 4.43022 4.47632 4.60695 4.85079 4.88970 4.99965 5.04476 5.13201 5.23981 5.24463 5.37982 5.42839 5.44896 5.55685 5.56812 5.63267 5.71003 5.75234 5.94436 6.17630 6.21661 6.25172 6.33693 6.45368 6.52492 6.59059 6.77238 7.45404 7.73947 7.89834 8.14494 8.22747 8.81569 9.60253 9.95867 11.10777 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021168 B = 0.002727 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.418803 B =10264.520919 C =10795.926915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.140 4.140 4 C 0.156 3.844 5 F -0.108 7.108 6 C -0.145 4.145 7 C 0.557 3.443 8 O -0.521 6.521 9 N -0.707 5.707 10 C 0.162 3.838 11 H 0.092 0.908 12 C -0.142 4.142 13 C 0.148 3.852 14 N -0.602 5.602 15 C -0.263 4.263 16 H 0.089 0.911 17 C 0.024 3.976 18 N -0.905 5.905 19 Si 0.881 3.119 20 H -0.290 1.290 21 H -0.301 1.301 22 H -0.268 1.268 23 C 0.102 3.898 24 C 0.079 3.921 25 H 0.064 0.936 26 O -0.571 6.571 27 C -0.087 4.087 28 C 0.079 3.921 29 F -0.130 7.130 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.153 0.847 34 H 0.397 0.603 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.030 0.970 39 H 0.264 0.736 40 H 0.038 0.962 41 H 0.078 0.922 42 H 0.378 0.622 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.227 7.651 2.758 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.069 4.069 3 C -0.159 4.159 4 C 0.135 3.865 5 F -0.086 7.086 6 C -0.149 4.149 7 C 0.342 3.658 8 O -0.398 6.398 9 N -0.357 5.357 10 C 0.058 3.942 11 H 0.110 0.890 12 C -0.182 4.182 13 C 0.022 3.978 14 N -0.327 5.327 15 C -0.391 4.391 16 H 0.107 0.893 17 C -0.175 4.175 18 N -0.548 5.548 19 Si 0.711 3.289 20 H -0.218 1.218 21 H -0.229 1.229 22 H -0.193 1.193 23 C -0.025 4.025 24 C 0.018 3.982 25 H 0.082 0.918 26 O -0.376 6.376 27 C -0.107 4.107 28 C 0.060 3.940 29 F -0.108 7.108 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.170 0.830 34 H 0.232 0.768 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.056 0.944 41 H 0.096 0.904 42 H 0.225 0.775 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.894 8.845 2.618 26.548 hybrid contribution 0.377 -0.929 1.180 1.548 sum -24.517 7.917 3.798 26.042 Atomic orbital electron populations 1.20840 0.88992 1.04119 1.03594 1.19937 0.97636 0.90935 0.98346 1.20894 0.91664 0.99170 1.04150 1.17642 0.89553 0.81090 0.98233 1.91630 1.80307 1.44085 1.92597 1.19977 0.94677 0.92321 1.07939 1.17806 0.85867 0.84605 0.77507 1.90856 1.69131 1.30768 1.49072 1.45947 1.07882 1.07809 1.74056 1.21028 0.77554 0.98304 0.97275 0.88982 1.22440 0.99014 1.02066 0.94699 1.20968 0.90188 0.89184 0.97453 1.44336 1.48922 1.25970 1.13455 1.18938 1.09864 1.17122 0.93189 0.89312 1.25301 0.97282 0.97084 0.97880 1.69827 1.32333 1.15248 1.37367 0.86988 0.76581 0.79614 0.85694 1.21794 1.22916 1.19291 1.22028 0.90967 1.00762 0.88718 1.22803 0.96087 0.96416 0.82876 0.91831 1.86442 1.75705 1.47084 1.28350 1.21194 0.92456 0.98522 0.98487 1.17268 0.89441 0.81465 1.05841 1.91528 1.79717 1.45589 1.93994 0.89876 0.90418 0.90267 0.82975 0.76767 0.91406 0.91202 0.91023 0.95238 0.92634 0.94410 0.90374 0.77510 0.83232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 9.82 36.01 0.35 -0.21 16 2 C -0.07 -0.50 5.89 -104.49 -0.62 -1.12 16 3 C -0.14 -1.12 9.66 -39.57 -0.38 -1.50 16 4 C 0.16 1.77 7.28 -38.97 -0.28 1.48 16 5 F -0.11 -1.49 15.55 2.25 0.04 -1.45 16 6 C -0.14 -1.72 5.88 -104.92 -0.62 -2.33 16 7 C 0.56 8.33 7.73 -12.40 -0.10 8.24 16 8 O -0.52 -9.72 15.00 5.30 0.08 -9.64 16 9 N -0.71 -9.83 4.87 -54.76 -0.27 -10.10 16 10 C 0.16 2.68 2.12 -67.89 -0.14 2.54 16 11 H 0.09 1.74 7.58 -51.93 -0.39 1.34 16 12 C -0.14 -2.36 5.65 -26.61 -0.15 -2.51 16 13 C 0.15 2.88 6.52 -3.71 -0.02 2.85 16 14 N -0.60 -13.75 2.77 -172.32 -0.48 -14.23 16 15 C -0.26 -7.08 10.04 -15.06 -0.15 -7.23 16 16 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 17 C 0.02 0.67 5.24 -17.43 -0.09 0.57 16 18 N -0.91 -26.94 13.97 55.49 0.78 -26.16 16 19 Si 0.88 21.71 24.35 -169.99 -4.14 17.57 16 20 H -0.29 -6.76 6.70 56.52 0.38 -6.39 16 21 H -0.30 -7.62 7.11 56.52 0.40 -7.22 16 22 H -0.27 -6.59 6.45 56.52 0.36 -6.22 16 23 C 0.10 2.13 3.81 -3.71 -0.01 2.11 16 24 C 0.08 1.34 3.14 -26.62 -0.08 1.26 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 O -0.57 -8.71 13.16 -35.23 -0.46 -9.17 16 27 C -0.09 -0.82 9.52 -39.11 -0.37 -1.19 16 28 C 0.08 0.69 7.23 -39.49 -0.29 0.41 16 29 F -0.13 -1.16 16.45 2.25 0.04 -1.13 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.37 7.63 -51.93 -0.40 -0.03 16 32 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 33 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.40 4.49 6.63 -40.82 -0.27 4.22 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.04 0.82 6.98 -51.93 -0.36 0.46 16 41 H 0.08 1.73 4.50 -51.93 -0.23 1.50 16 42 H 0.38 4.48 9.08 45.56 0.41 4.89 16 43 H 0.15 1.15 6.40 -52.49 -0.34 0.81 16 LS Contribution 355.86 15.07 5.36 5.36 Total: -1.00 -33.13 355.86 -6.58 -39.71 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.56 Total: 5.86 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -2.96 Total: 3.38 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.03 Total: -50.49 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.38 Total: -18.81 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.07 Total: -2.58 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.14 Total: 17.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.13 -6.58 -39.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090337759.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.906 kcal (2) G-P(sol) polarization free energy of solvation -33.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds