Wall clock time and date at job start Sat Apr 11 2020 05:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38307 * 119.80665 * 2 1 4 4 C 1.38216 * 120.18973 * 179.97438 * 3 2 1 5 5 F 1.35100 * 120.09693 * 180.02562 * 4 3 2 6 6 C 1.39901 * 119.80982 * 0.02856 * 4 3 2 7 7 C 1.47541 * 120.19242 * 179.97438 * 6 4 3 8 8 O 1.21584 * 119.99885 * 89.99484 * 7 6 4 9 9 N 1.34775 * 119.99864 * 269.99848 * 7 6 4 10 10 C 1.46503 * 119.99579 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.45136 * 35.03348 * 10 9 7 12 12 C 1.53039 * 109.45846 * 275.06555 * 10 9 7 13 13 C 1.52760 * 109.38854 * 301.22060 * 12 10 9 14 14 N 1.46922 * 109.00877 * 305.58987 * 13 12 10 15 15 C 1.36932 * 120.63376 * 233.58214 * 14 13 12 16 16 H 1.08002 * 120.00663 * 152.17063 * 15 14 13 17 17 C 1.38819 * 119.99763 * 331.89781 * 15 14 13 18 18 N 1.31619 * 119.99653 * 343.16079 * 17 15 14 19 19 Si 1.86799 * 120.00056 * 163.16209 * 17 15 14 20 20 H 1.48498 * 109.47033 * 89.99898 * 19 17 15 21 21 H 1.48497 * 109.46906 * 209.99748 * 19 17 15 22 22 H 1.48496 * 109.47329 * 330.00182 * 19 17 15 23 23 C 1.46930 * 118.73694 * 53.30539 * 14 13 12 24 24 C 1.53042 * 109.45790 * 155.00125 * 10 9 7 25 25 H 1.09002 * 109.49778 * 178.60573 * 24 10 9 26 26 O 1.42901 * 109.52513 * 298.68765 * 24 10 9 27 27 C 1.39902 * 119.61741 * 0.27295 * 6 4 3 28 28 F 1.35108 * 120.09535 * 179.70931 * 27 6 4 29 29 C 1.38221 * 119.81022 * 359.40531 * 27 6 4 30 30 H 1.09000 * 109.47600 * 89.99414 * 1 2 3 31 31 H 1.09005 * 109.46513 * 209.99753 * 1 2 3 32 32 H 1.09001 * 109.47350 * 329.99074 * 1 2 3 33 33 H 1.08006 * 119.90355 * 0.02562 * 3 2 1 34 34 H 0.97001 * 120.00263 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.49950 * 61.30480 * 12 10 9 36 36 H 1.09007 * 109.49637 * 181.36313 * 12 10 9 37 37 H 1.08996 * 109.51085 * 185.70306 * 13 12 10 38 38 H 1.09005 * 109.42847 * 65.42406 * 13 12 10 39 39 H 0.97007 * 119.99830 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58541 * 66.43258 * 23 14 13 41 41 H 1.09004 * 109.58472 * 186.71118 * 23 14 13 42 42 H 0.96694 * 113.99898 * 179.85339 * 26 24 10 43 43 H 1.07994 * 119.90996 * 180.32272 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2001 0.0000 4 6 3.5766 1.2093 0.0005 5 9 4.2463 2.3827 0.0011 6 6 4.2802 0.0001 0.0005 7 6 5.7556 0.0001 0.0005 8 8 6.3635 0.0002 1.0534 9 7 6.4294 0.0002 -1.1667 10 6 7.8945 0.0008 -1.1667 11 1 8.2576 -0.5889 -0.3250 12 6 8.4037 1.4383 -1.0395 13 6 7.8681 2.2708 -2.2030 14 7 8.2264 1.6130 -3.4669 15 6 8.8905 2.3004 -4.4475 16 1 9.5311 1.7721 -5.1381 17 6 8.7359 3.6755 -4.5574 18 7 7.7262 4.2739 -3.9618 19 14 9.9608 4.6767 -5.5507 20 1 9.5025 4.7623 -6.9605 21 1 10.0618 6.0436 -4.9791 22 1 11.2919 4.0202 -5.5019 23 6 7.8640 0.2017 -3.6563 24 6 8.4046 -0.6091 -2.4743 25 1 9.4943 -0.5864 -2.4856 26 8 7.9546 -1.9615 -2.5781 27 6 3.5767 -1.2091 -0.0059 28 9 4.2464 -2.3825 -0.0120 29 6 2.1945 -1.2000 0.0003 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3632 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5140 33 1 1.6497 2.1327 0.0004 34 1 5.9445 -0.0002 -2.0068 35 1 8.0595 1.8642 -0.0971 36 1 9.4935 1.4417 -1.0637 37 1 8.3096 3.2669 -2.1715 38 1 6.7835 2.3470 -2.1253 39 1 7.6183 5.2349 -4.0383 40 1 6.7791 0.1058 -3.6996 41 1 8.3007 -0.1662 -4.5848 42 1 8.2399 -2.4100 -3.3858 43 1 1.6499 -2.1326 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090419104.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:52 Heat of formation + Delta-G solvation = -126.707129 kcal Electronic energy + Delta-G solvation = -30767.689284 eV Core-core repulsion = 26256.478888 eV Total energy + Delta-G solvation = -4511.210397 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.15663 -49.04691 -40.06849 -39.01171 -37.75879 -35.44456 -34.06616 -33.09326 -31.66497 -30.63365 -30.20632 -28.74046 -27.76198 -25.33197 -23.14663 -23.10466 -22.27720 -21.85956 -20.87503 -18.78053 -18.21947 -17.58524 -17.55751 -17.09238 -16.52359 -16.20033 -15.88326 -15.55277 -15.37036 -15.15171 -14.93235 -14.42498 -14.32141 -14.22256 -13.88316 -13.85261 -13.62479 -13.40280 -13.24553 -12.73429 -12.35299 -12.28115 -12.13064 -11.99741 -11.95781 -11.74840 -11.64621 -11.19067 -10.88430 -10.68748 -10.40499 -10.22550 -9.97296 -9.90794 -9.71595 -9.43977 -9.06196 -8.99737 -8.68462 -8.52119 -6.78003 -5.86895 -3.31463 0.55610 0.74832 2.67344 2.97851 3.32631 3.35046 3.40523 3.42276 3.60128 4.09261 4.27222 4.35457 4.50128 4.61142 4.71730 4.79983 5.03953 5.21536 5.26462 5.27972 5.30032 5.43848 5.52875 5.56837 5.58692 5.66438 5.69171 5.76003 5.94863 5.98702 6.04705 6.22566 6.43496 6.46763 6.52683 6.63437 6.68651 6.87584 7.27819 7.59671 7.71138 7.73803 7.91847 8.35163 8.37800 9.10891 9.73226 10.28715 11.21195 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003690 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.521557 B = 7585.729546 C = 8628.112982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.016 4.016 3 C -0.169 4.169 4 C 0.174 3.826 5 F -0.114 7.114 6 C -0.201 4.201 7 C 0.567 3.433 8 O -0.531 6.531 9 N -0.688 5.688 10 C 0.165 3.835 11 H 0.081 0.919 12 C -0.154 4.154 13 C 0.172 3.828 14 N -0.586 5.586 15 C -0.261 4.261 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.898 5.898 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.118 3.882 24 C 0.076 3.924 25 H 0.068 0.932 26 O -0.570 6.570 27 C 0.168 3.832 28 F -0.120 7.120 29 C -0.172 4.172 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.149 0.851 34 H 0.404 0.596 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.022 0.978 39 H 0.255 0.745 40 H 0.021 0.979 41 H 0.060 0.940 42 H 0.374 0.626 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.093 -10.118 6.291 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.017 4.017 3 C -0.188 4.188 4 C 0.153 3.847 5 F -0.092 7.092 6 C -0.207 4.207 7 C 0.350 3.650 8 O -0.408 6.408 9 N -0.338 5.338 10 C 0.060 3.940 11 H 0.099 0.901 12 C -0.194 4.194 13 C 0.046 3.954 14 N -0.311 5.311 15 C -0.390 4.390 16 H 0.084 0.916 17 C -0.193 4.193 18 N -0.541 5.541 19 Si 0.733 3.267 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.204 1.204 23 C -0.009 4.009 24 C 0.015 3.985 25 H 0.086 0.914 26 O -0.374 6.374 27 C 0.148 3.852 28 F -0.098 7.098 29 C -0.190 4.190 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.166 0.834 34 H 0.240 0.760 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.040 0.960 39 H 0.065 0.935 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.220 0.780 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -12.876 -9.786 7.598 17.869 hybrid contribution 0.924 0.515 -1.497 1.833 sum -11.952 -9.271 6.101 16.311 Atomic orbital electron populations 1.20885 0.89359 1.03730 1.03388 1.19649 0.96843 0.91112 0.94057 1.21033 0.91548 0.99987 1.06268 1.17303 0.89659 0.80130 0.97588 1.91638 1.80496 1.44204 1.92825 1.20011 0.95522 0.92620 1.12500 1.17632 0.85592 0.77042 0.84696 1.90788 1.68956 1.49880 1.31217 1.45913 1.07661 1.72304 1.07939 1.20926 0.78653 0.97300 0.97087 0.90097 1.22532 1.01149 0.94399 1.01309 1.20701 0.96876 0.96217 0.81560 1.43993 1.66924 1.05705 1.14434 1.19140 1.19794 0.90114 1.09948 0.91599 1.25058 0.97017 0.97918 0.99268 1.70038 1.27907 1.09491 1.46687 0.86292 0.81195 0.79624 0.79605 1.21349 1.21467 1.20421 1.21538 0.96909 0.87223 0.95271 1.22740 0.98092 0.81226 0.96427 0.91367 1.86495 1.79256 1.25806 1.45858 1.17251 0.89597 0.79902 0.98451 1.91587 1.80639 1.44480 1.93102 1.20968 0.91443 0.99866 1.06771 0.89950 0.90657 0.90577 0.83359 0.76004 0.91735 0.91271 0.89147 0.96028 0.93478 0.96117 0.92155 0.77966 0.83524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 36.01 0.36 -0.25 16 2 C -0.02 -0.14 5.88 -104.57 -0.62 -0.76 16 3 C -0.17 -1.80 9.65 -39.56 -0.38 -2.18 16 4 C 0.17 2.51 7.29 -38.97 -0.28 2.23 16 5 F -0.11 -1.92 16.83 2.25 0.04 -1.88 16 6 C -0.20 -3.17 5.64 -104.86 -0.59 -3.76 16 7 C 0.57 10.69 6.51 -12.47 -0.08 10.61 16 8 O -0.53 -11.56 16.77 5.29 0.09 -11.47 16 9 N -0.69 -12.62 4.16 -54.81 -0.23 -12.84 16 10 C 0.16 3.09 2.47 -67.89 -0.17 2.92 16 11 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 12 C -0.15 -3.12 5.75 -26.83 -0.15 -3.27 16 13 C 0.17 4.07 5.02 -3.93 -0.02 4.05 16 14 N -0.59 -14.03 3.00 -172.58 -0.52 -14.55 16 15 C -0.26 -6.88 9.58 -15.06 -0.14 -7.02 16 16 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 17 C 0.01 0.18 4.92 -17.43 -0.09 0.10 16 18 N -0.90 -25.47 11.18 55.49 0.62 -24.85 16 19 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 23 C 0.12 2.31 5.85 -3.71 -0.02 2.29 16 24 C 0.08 1.32 3.36 -26.61 -0.09 1.23 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 26 O -0.57 -8.79 13.21 -35.23 -0.47 -9.25 16 27 C 0.17 2.27 7.29 -38.96 -0.28 1.98 16 28 F -0.12 -1.77 16.83 2.25 0.04 -1.73 16 29 C -0.17 -1.69 9.65 -39.56 -0.38 -2.07 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.08 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.40 7.19 6.85 -40.82 -0.28 6.91 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.09 2.41 6.05 -51.93 -0.31 2.10 16 38 H 0.02 0.54 7.74 -51.93 -0.40 0.14 16 39 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.02 0.42 6.64 -51.93 -0.34 0.07 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.71 16 42 H 0.37 4.12 9.08 45.56 0.41 4.53 16 43 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -32.68 364.67 -7.56 -40.24 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.66 Total: 8.62 kcal Atomic # 6 Polarization: 9.04 SS G_CDS: -2.94 Total: 6.10 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -0.12 Total: -52.25 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.38 Total: -20.73 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.08 Total: -3.61 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.68 -7.56 -40.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090419104.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.469 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds