Wall clock time and date at job start Sat Apr 11 2020 05:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38306 * 119.80521 * 2 1 4 4 C 1.38224 * 120.18633 * 180.02562 * 3 2 1 5 5 F 1.35102 * 120.09300 * 179.97438 * 4 3 2 6 6 C 1.39903 * 119.80733 * 359.97438 * 4 3 2 7 7 C 1.47541 * 120.18487 * 180.02562 * 6 4 3 8 8 O 1.21582 * 120.00265 * 90.00391 * 7 6 4 9 9 N 1.34779 * 120.00052 * 269.99658 * 7 6 4 10 10 C 1.46494 * 120.00215 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46032 * 324.97377 * 10 9 7 12 12 C 1.53032 * 109.46389 * 84.93320 * 10 9 7 13 13 C 1.53195 * 109.31885 * 181.38629 * 12 10 9 14 14 N 1.46925 * 108.77407 * 305.36523 * 13 12 10 15 15 C 1.36930 * 120.63220 * 233.63121 * 14 13 12 16 16 H 1.07998 * 120.00280 * 27.66074 * 15 14 13 17 17 C 1.38815 * 119.99720 * 207.66862 * 15 14 13 18 18 N 1.31614 * 120.00332 * 17.34405 * 17 15 14 19 19 Si 1.86808 * 119.99812 * 197.34769 * 17 15 14 20 20 H 1.48505 * 109.46884 * 89.99636 * 19 17 15 21 21 H 1.48498 * 109.47378 * 209.99899 * 19 17 15 22 22 H 1.48504 * 109.47049 * 329.99850 * 19 17 15 23 23 C 1.46998 * 118.75135 * 53.60713 * 14 13 12 24 24 C 1.53041 * 109.46252 * 205.00625 * 10 9 7 25 25 H 1.09004 * 109.49519 * 298.56323 * 24 10 9 26 26 O 1.42895 * 109.50013 * 58.62495 * 24 10 9 27 27 C 1.39896 * 119.62280 * 0.27427 * 6 4 3 28 28 F 1.35099 * 120.09614 * 179.70020 * 27 6 4 29 29 C 1.38229 * 119.80862 * 359.45013 * 27 6 4 30 30 H 1.09003 * 109.47132 * 90.00328 * 1 2 3 31 31 H 1.09003 * 109.47443 * 210.00032 * 1 2 3 32 32 H 1.09000 * 109.47251 * 329.99863 * 1 2 3 33 33 H 1.07995 * 119.90602 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99659 * 0.02562 * 9 7 6 35 35 H 1.09003 * 109.49644 * 301.34396 * 12 10 9 36 36 H 1.09008 * 109.49909 * 61.40032 * 12 10 9 37 37 H 1.08994 * 109.58365 * 65.15212 * 13 12 10 38 38 H 1.08992 * 109.58793 * 185.57771 * 13 12 10 39 39 H 0.97007 * 120.00009 * 179.97438 * 18 17 15 40 40 H 1.09008 * 109.62880 * 186.62202 * 23 14 13 41 41 H 1.08995 * 109.58258 * 66.17324 * 23 14 13 42 42 H 0.96702 * 114.00376 * 179.97438 * 26 24 10 43 43 H 1.08000 * 119.90571 * 180.27414 * 29 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2001 0.0000 4 6 3.5766 1.2093 -0.0005 5 9 4.2463 2.3827 -0.0011 6 6 4.2801 0.0000 -0.0005 7 6 5.7556 0.0001 -0.0005 8 8 6.3635 0.0001 1.0524 9 7 6.4295 0.0001 -1.1677 10 6 7.8944 -0.0004 -1.1678 11 1 8.2578 0.5892 -0.3261 12 6 8.4039 -1.4378 -1.0406 13 6 9.9354 -1.4315 -1.0061 14 7 10.4321 -0.7179 -2.1905 15 6 11.3397 -1.3065 -3.0300 16 1 11.3722 -2.3821 -3.1216 17 6 12.2181 -0.5206 -3.7633 18 7 12.4247 0.7327 -3.4186 19 14 13.1071 -1.2419 -5.2395 20 1 12.2895 -1.0310 -6.4612 21 1 14.4220 -0.5712 -5.4019 22 1 13.3163 -2.6970 -5.0290 23 6 9.9360 0.6398 -2.4577 24 6 8.4045 0.6096 -2.4754 25 1 8.0622 0.0062 -3.3162 26 8 7.9026 1.9409 -2.6084 27 6 3.5767 -1.2092 -0.0058 28 9 4.2464 -2.3825 -0.0120 29 6 2.1944 -1.2001 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6498 2.1326 0.0004 34 1 5.9444 0.0004 -2.0078 35 1 8.0210 -1.8794 -0.1205 36 1 8.0611 -2.0222 -1.8946 37 1 10.2784 -0.9252 -0.1039 38 1 10.3053 -2.4567 -1.0154 39 1 13.0388 1.2817 -3.9309 40 1 10.3059 0.9812 -3.4246 41 1 10.2791 1.3150 -1.6738 42 1 8.1870 2.3896 -3.4164 43 1 1.6498 -2.1327 0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090419106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:55 Heat of formation + Delta-G solvation = -153.768860 kcal Electronic energy + Delta-G solvation = -30038.291959 eV Core-core repulsion = 25525.908077 eV Total energy + Delta-G solvation = -4512.383881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.23808 -50.21451 -41.39951 -40.06624 -39.25974 -36.95296 -35.96544 -34.29147 -33.64743 -31.54430 -31.33923 -30.59611 -28.77960 -26.96256 -24.53155 -24.09456 -23.82049 -23.20861 -21.80902 -21.26216 -19.45881 -18.79019 -18.61355 -18.44383 -18.19226 -17.78011 -17.06942 -16.92569 -16.74815 -16.51978 -16.37486 -15.76965 -15.71798 -15.60310 -15.29264 -15.05964 -14.78243 -14.48023 -14.37116 -14.19316 -13.93335 -13.63808 -13.42270 -13.11309 -12.99402 -12.98406 -12.75504 -12.68666 -12.60880 -12.53858 -12.17113 -12.04785 -11.92723 -11.57900 -11.22387 -10.99609 -10.63860 -10.27154 -9.99551 -9.94124 -8.81063 -7.93172 -5.40790 -0.40881 -0.17314 1.20831 1.47913 1.48818 1.58400 1.85637 2.15313 2.47754 2.58925 3.02714 3.17941 3.21810 3.34798 3.56504 3.58810 3.68245 3.82522 3.96208 4.01739 4.23467 4.33529 4.38091 4.48008 4.53733 4.58321 4.59702 4.68277 4.79185 4.84678 4.91022 4.92083 4.97602 5.09696 5.25339 5.26099 5.27529 5.29366 5.50828 5.61409 5.62756 6.25002 6.30428 6.77086 6.91775 7.06565 7.73433 8.27238 9.13896 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.022275 B = 0.002722 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.686468 B =10282.773845 C =10721.604280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.002 3.998 3 C -0.155 4.155 4 C 0.148 3.852 5 F -0.137 7.137 6 C -0.229 4.229 7 C 0.562 3.438 8 O -0.571 6.571 9 N -0.690 5.690 10 C 0.167 3.833 11 H 0.056 0.944 12 C -0.123 4.123 13 C 0.143 3.857 14 N -0.604 5.604 15 C -0.267 4.267 16 H 0.074 0.926 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.972 3.028 20 H -0.280 1.280 21 H -0.297 1.297 22 H -0.269 1.269 23 C 0.158 3.842 24 C 0.093 3.907 25 H 0.068 0.932 26 O -0.574 6.574 27 C 0.151 3.849 28 F -0.134 7.134 29 C -0.154 4.154 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.177 0.823 34 H 0.412 0.588 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.009 0.991 38 H 0.070 0.930 39 H 0.252 0.748 40 H 0.075 0.925 41 H -0.004 1.004 42 H 0.393 0.607 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.970 -1.595 2.400 29.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.001 3.999 3 C -0.174 4.174 4 C 0.128 3.872 5 F -0.116 7.116 6 C -0.234 4.234 7 C 0.348 3.652 8 O -0.451 6.451 9 N -0.338 5.338 10 C 0.062 3.938 11 H 0.075 0.925 12 C -0.163 4.163 13 C 0.017 3.983 14 N -0.329 5.329 15 C -0.396 4.396 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.800 3.200 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.193 1.193 23 C 0.031 3.969 24 C 0.032 3.968 25 H 0.086 0.914 26 O -0.381 6.381 27 C 0.131 3.869 28 F -0.112 7.112 29 C -0.172 4.172 30 H 0.118 0.882 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.195 0.805 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.027 0.973 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.093 0.907 41 H 0.014 0.986 42 H 0.243 0.757 43 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -28.627 -1.632 3.633 28.903 hybrid contribution 1.930 0.223 -1.308 2.342 sum -26.697 -1.408 2.326 26.835 Atomic orbital electron populations 1.21045 0.86019 1.05422 1.04859 1.20156 0.98864 0.89864 0.90968 1.21396 0.89709 1.01989 1.04259 1.17610 0.90955 0.78809 0.99860 1.91557 1.81289 1.45304 1.93407 1.19844 0.93057 0.94424 1.16030 1.18285 0.87308 0.75633 0.83974 1.90786 1.70441 1.51176 1.32674 1.45910 1.06974 1.72580 1.08386 1.20795 0.78764 0.96726 0.97469 0.92539 1.22216 0.97124 0.94786 1.02192 1.21019 0.91764 0.96838 0.88659 1.44277 1.48581 1.14504 1.25508 1.19562 1.10164 0.92030 1.17868 0.90863 1.25863 0.98146 0.97008 1.03350 1.70191 1.38549 1.08924 1.40412 0.85200 0.77142 0.78096 0.79578 1.20685 1.22375 1.19329 1.21235 0.89367 0.86059 1.00243 1.22554 0.94945 0.83486 0.95783 0.91397 1.86409 1.75212 1.27917 1.48538 1.17536 0.90867 0.78715 0.99809 1.91551 1.81214 1.45073 1.93403 1.21406 0.89761 1.01933 1.04145 0.88226 0.88994 0.89124 0.80521 0.75177 0.91411 0.90480 0.97263 0.91131 0.93847 0.90709 0.98619 0.75723 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.19 10.00 71.24 0.71 0.52 16 2 C 0.00 0.02 5.88 -19.83 -0.12 -0.10 16 3 C -0.16 -2.11 9.65 22.28 0.22 -1.90 16 4 C 0.15 3.45 7.29 22.67 0.17 3.61 16 5 F -0.14 -3.91 16.83 44.97 0.76 -3.15 16 6 C -0.23 -6.25 5.64 -20.02 -0.11 -6.36 16 7 C 0.56 20.11 6.51 86.70 0.56 20.68 16 8 O -0.57 -25.34 16.77 -3.97 -0.07 -25.41 16 9 N -0.69 -23.05 4.91 -445.59 -2.19 -25.24 16 10 C 0.17 6.50 2.12 45.02 0.10 6.59 16 11 H 0.06 2.60 7.58 -2.39 -0.02 2.58 16 12 C -0.12 -4.67 5.65 30.67 0.17 -4.50 16 13 C 0.14 6.32 6.52 86.36 0.56 6.88 16 14 N -0.60 -30.56 3.00 -698.93 -2.09 -32.66 16 15 C -0.27 -14.41 9.59 84.04 0.81 -13.61 16 16 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 17 C -0.05 -2.63 4.91 84.86 0.42 -2.21 16 18 N -0.94 -54.52 11.19 21.65 0.24 -54.28 16 19 Si 0.97 43.75 29.59 68.60 2.03 45.78 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 C 0.16 7.65 4.94 86.35 0.43 8.08 16 24 C 0.09 3.60 3.14 30.67 0.10 3.70 16 25 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 26 O -0.57 -20.19 13.16 -148.98 -1.96 -22.15 16 27 C 0.15 3.35 7.29 22.67 0.17 3.51 16 28 F -0.13 -3.46 16.83 44.97 0.76 -2.71 16 29 C -0.15 -1.99 9.65 22.28 0.22 -1.77 16 30 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 31 H 0.09 -0.04 8.08 -2.39 -0.02 -0.06 16 32 H 0.09 -0.01 8.08 -2.39 -0.02 -0.03 16 33 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 34 H 0.41 11.51 8.59 -92.71 -0.80 10.71 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 37 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 38 H 0.07 2.94 7.93 -2.39 -0.02 2.93 16 39 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 40 H 0.07 3.92 6.04 -2.38 -0.01 3.90 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.39 10.85 9.08 -74.06 -0.67 10.18 16 43 H 0.18 1.18 8.06 -2.91 -0.02 1.16 16 Total: -1.00 -75.69 368.92 1.46 -74.22 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: -0.40 Total: 22.45 kcal Atomic # 6 Polarization: 18.75 SS G_CDS: 4.38 Total: 23.13 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -4.04 Total: -112.17 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -2.03 Total: -47.56 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 1.51 Total: -5.86 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -75.69 1.46 -74.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090419106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.546 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds