Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38323 * 119.90324 * 2 1 4 4 C 1.38292 * 120.38477 * 179.72535 * 3 2 1 5 5 C 1.38247 * 120.18221 * 0.55510 * 4 3 2 6 6 F 1.35104 * 120.08989 * 179.70332 * 5 4 3 7 7 C 1.39873 * 119.81063 * 359.71902 * 5 4 3 8 8 C 1.47546 * 120.19142 * 179.97438 * 7 5 4 9 9 O 1.21580 * 120.00394 * 270.02672 * 8 7 5 10 10 N 1.34780 * 119.99609 * 90.02473 * 8 7 5 11 11 C 1.46497 * 119.99688 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46302 * 35.00180 * 11 10 8 13 13 C 1.53038 * 109.46176 * 275.02811 * 11 10 8 14 14 C 1.53189 * 109.31566 * 178.61686 * 13 11 10 15 15 N 1.46925 * 108.77650 * 54.63575 * 14 13 11 16 16 C 1.36932 * 120.63608 * 126.36933 * 15 14 13 17 17 H 1.08004 * 119.99796 * 331.83110 * 16 15 14 18 18 C 1.38817 * 120.00347 * 151.82664 * 16 15 14 19 19 N 1.31624 * 119.99775 * 343.09281 * 18 16 15 20 20 Si 1.86799 * 120.00147 * 163.09227 * 18 16 15 21 21 H 1.48503 * 109.47192 * 59.99954 * 20 18 16 22 22 H 1.48499 * 109.46870 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47127 * 300.00297 * 20 18 16 24 24 C 1.46934 * 118.73614 * 306.39221 * 15 14 13 25 25 C 1.53047 * 109.45877 * 154.97233 * 11 10 8 26 26 H 1.08996 * 109.49410 * 301.33793 * 25 11 10 27 27 O 1.42900 * 109.49363 * 61.43460 * 25 11 10 28 28 C 1.38198 * 119.90408 * 180.27630 * 2 1 3 29 29 F 1.35095 * 120.10007 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.46897 * 269.72563 * 1 2 3 31 31 H 1.08996 * 109.47583 * 29.72462 * 1 2 3 32 32 H 1.08996 * 109.47103 * 149.73015 * 1 2 3 33 33 H 1.08004 * 119.81088 * 359.97438 * 3 2 1 34 34 H 1.07989 * 119.90926 * 180.27354 * 4 3 2 35 35 H 0.96999 * 120.00052 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.49543 * 298.56623 * 13 11 10 37 37 H 1.09000 * 109.49938 * 58.62847 * 13 11 10 38 38 H 1.09000 * 109.59132 * 174.41887 * 14 13 11 39 39 H 1.08996 * 109.58696 * 294.84678 * 14 13 11 40 40 H 0.96998 * 119.99571 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58568 * 173.39775 * 24 15 14 42 42 H 1.09001 * 109.58518 * 293.67982 * 24 15 14 43 43 H 0.96707 * 113.99673 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1991 0.0000 4 6 3.5795 1.2107 0.0057 5 6 4.2845 0.0216 -0.0001 6 9 5.6355 0.0351 -0.0005 7 6 3.5953 -1.1955 -0.0058 8 6 4.3393 -2.4696 -0.0126 9 8 4.6458 -2.9891 -1.0683 10 7 4.6793 -3.0576 1.1515 11 6 5.4186 -4.3223 1.1448 12 1 6.1108 -4.3339 0.3030 13 6 4.4350 -5.4872 1.0121 14 6 5.2137 -6.8057 0.9707 15 7 6.0809 -6.8802 2.1543 16 6 6.0315 -7.9650 2.9884 17 1 5.1170 -8.5317 3.0837 18 6 7.1567 -8.3365 3.7115 19 7 8.3416 -7.8796 3.3657 20 14 6.9892 -9.4848 5.1753 21 1 6.4080 -10.7760 4.7277 22 1 8.3277 -9.7243 5.7722 23 1 6.0986 -8.8666 6.1901 24 6 7.0019 -5.7681 2.4264 25 6 6.2029 -4.4614 2.4517 26 1 6.8866 -3.6191 2.5570 27 8 5.2936 -4.4793 3.5539 28 6 2.1960 -1.1980 -0.0058 29 9 1.5206 -2.3680 -0.0109 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3634 0.8924 -0.5095 32 1 -0.3633 -0.8875 -0.5180 33 1 1.6519 2.1317 -0.0004 34 1 4.1100 2.1513 0.0101 35 1 4.4345 -2.6433 1.9938 36 1 3.7582 -5.4910 1.8667 37 1 3.8598 -5.3748 0.0931 38 1 4.5156 -7.6428 0.9760 39 1 5.8236 -6.8417 0.0680 40 1 9.1278 -8.1389 3.8712 41 1 7.4837 -5.9206 3.3922 42 1 7.7591 -5.7211 1.6437 43 1 5.7226 -4.5658 4.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090550685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -126.972757 kcal Electronic energy + Delta-G solvation = -30269.971642 eV Core-core repulsion = 25758.749727 eV Total energy + Delta-G solvation = -4511.221915 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.32659 -49.30488 -40.11672 -38.99817 -37.82476 -34.79940 -34.35412 -33.11846 -32.14139 -31.34710 -29.34283 -29.03914 -27.15575 -25.50389 -24.20040 -22.62540 -22.26245 -21.75325 -20.34866 -19.47123 -18.52869 -17.83390 -17.63239 -17.08977 -16.58989 -15.97617 -15.93564 -15.62422 -15.49367 -15.20479 -14.91246 -14.74832 -14.39656 -14.11601 -13.82987 -13.77668 -13.74595 -13.40659 -13.23393 -12.78744 -12.54917 -12.22495 -12.15760 -12.08996 -11.99141 -11.98355 -11.27800 -11.17454 -10.79484 -10.60669 -10.48221 -10.27122 -10.07507 -9.95391 -9.66015 -9.40987 -9.20020 -8.99205 -8.76767 -8.50228 -6.68254 -5.81690 -3.22731 0.38806 0.53209 2.47358 2.80418 3.14899 3.37446 3.42987 3.43350 3.44852 3.96928 4.16025 4.29822 4.46153 4.47922 4.57505 4.81644 4.99736 5.17475 5.23440 5.29986 5.34919 5.38992 5.41899 5.45349 5.51987 5.56315 5.66650 5.74776 5.93972 6.02563 6.19115 6.23962 6.27494 6.45419 6.54540 6.78774 6.80974 6.97527 7.16491 7.41821 7.59097 7.77827 8.18760 8.25291 8.42798 9.17666 9.80627 10.37894 11.27219 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.002824 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.830098 B = 9911.458165 C =10334.944413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.132 4.132 3 C -0.051 4.051 4 C -0.161 4.161 5 C 0.156 3.844 6 F -0.121 7.121 7 C -0.189 4.189 8 C 0.561 3.439 9 O -0.523 6.523 10 N -0.702 5.702 11 C 0.161 3.839 12 H 0.093 0.907 13 C -0.137 4.137 14 C 0.149 3.851 15 N -0.583 5.583 16 C -0.244 4.244 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.908 5.908 20 Si 0.904 3.096 21 H -0.283 1.283 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.146 3.854 25 C 0.073 3.927 26 H 0.044 0.956 27 O -0.560 6.560 28 C 0.162 3.838 29 F -0.117 7.117 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.404 0.596 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.096 0.904 42 H 0.029 0.971 43 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 21.539 -4.032 25.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.133 4.133 3 C -0.069 4.069 4 C -0.180 4.180 5 C 0.136 3.864 6 F -0.099 7.099 7 C -0.195 4.195 8 C 0.344 3.656 9 O -0.399 6.399 10 N -0.351 5.351 11 C 0.058 3.942 12 H 0.110 0.890 13 C -0.177 4.177 14 C 0.022 3.978 15 N -0.305 5.305 16 C -0.373 4.373 17 H 0.083 0.917 18 C -0.198 4.198 19 N -0.552 5.552 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.217 1.217 23 H -0.210 1.210 24 C 0.019 3.981 25 C 0.012 3.988 26 H 0.062 0.938 27 O -0.365 6.365 28 C 0.141 3.859 29 F -0.095 7.095 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.238 0.762 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.114 0.886 42 H 0.047 0.953 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.469 21.071 -5.198 25.030 hybrid contribution 0.562 -0.629 1.574 1.786 sum -11.908 20.442 -3.623 23.933 Atomic orbital electron populations 1.20751 0.89070 1.03857 1.03334 1.19953 0.97802 0.91247 1.04303 1.20886 0.92881 0.97564 0.95598 1.21147 0.94819 0.97174 1.04867 1.17305 0.77304 0.92350 0.99460 1.91587 1.27945 1.97187 1.93181 1.20061 0.93281 0.94856 1.11254 1.17746 0.79533 0.83388 0.84953 1.90831 1.53927 1.64310 1.30832 1.46209 1.56625 1.24544 1.07754 1.21120 0.93717 0.81893 0.97483 0.88951 1.22314 0.98456 0.95755 1.01157 1.20892 0.92938 0.94067 0.89928 1.43871 1.43913 1.17859 1.24834 1.19146 0.94943 1.05314 1.17940 0.91703 1.25032 0.94838 0.99045 1.00933 1.70010 0.97244 1.48130 1.39864 0.86345 0.76554 0.80800 0.82930 1.20907 1.21730 1.21045 1.21438 0.90516 0.83527 1.02648 1.22836 0.90806 0.99526 0.85607 0.93773 1.86348 1.36694 1.96748 1.16711 1.17129 0.87369 0.81805 0.99561 1.91576 1.79397 1.45494 1.93045 0.90289 0.90493 0.90767 0.83472 0.83316 0.76173 0.91067 0.92821 0.92334 0.96173 0.93581 0.88581 0.95346 0.77759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.67 9.83 36.01 0.35 -0.32 16 2 C -0.13 -1.10 5.88 -104.61 -0.62 -1.72 16 3 C -0.05 -0.33 9.68 -39.53 -0.38 -0.71 16 4 C -0.16 -1.24 10.01 -39.56 -0.40 -1.63 16 5 C 0.16 1.79 7.29 -38.97 -0.28 1.50 16 6 F -0.12 -1.57 16.83 2.25 0.04 -1.53 16 7 C -0.19 -2.55 5.64 -104.86 -0.59 -3.14 16 8 C 0.56 9.49 6.51 -12.46 -0.08 9.41 16 9 O -0.52 -10.73 16.77 5.30 0.09 -10.64 16 10 N -0.70 -11.40 5.05 -54.80 -0.28 -11.68 16 11 C 0.16 3.00 2.20 -67.89 -0.15 2.85 16 12 H 0.09 1.86 7.58 -51.93 -0.39 1.46 16 13 C -0.14 -2.70 5.51 -26.61 -0.15 -2.84 16 14 C 0.15 3.29 6.52 -3.71 -0.02 3.27 16 15 N -0.58 -14.51 2.93 -172.32 -0.51 -15.02 16 16 C -0.24 -6.63 9.58 -15.06 -0.14 -6.77 16 17 H 0.07 1.76 7.89 -52.48 -0.41 1.34 16 18 C 0.00 -0.02 4.92 -17.43 -0.09 -0.10 16 19 N -0.91 -25.77 11.20 55.49 0.62 -25.14 16 20 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.15 3.35 4.95 -3.71 -0.02 3.33 16 25 C 0.07 1.37 3.38 -26.61 -0.09 1.28 16 26 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 27 O -0.56 -10.04 12.08 -35.23 -0.43 -10.47 16 28 C 0.16 1.92 7.23 -38.96 -0.28 1.64 16 29 F -0.12 -1.59 16.03 2.25 0.04 -1.55 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.29 8.08 -51.93 -0.42 -0.13 16 32 H 0.07 0.50 7.63 -51.93 -0.40 0.10 16 33 H 0.15 0.43 8.06 -52.48 -0.42 0.00 16 34 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.40 5.85 8.24 -40.82 -0.34 5.51 16 36 H 0.07 1.47 7.61 -51.93 -0.40 1.07 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 1.27 7.93 -51.93 -0.41 0.86 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.10 2.40 6.06 -51.93 -0.31 2.09 16 42 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.38 5.83 9.08 45.56 0.41 6.24 16 LS Contribution 366.15 15.07 5.52 5.52 Total: -1.00 -32.76 366.15 -7.63 -40.39 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -4.76 Total: 7.68 kcal Atomic # 6 Polarization: 8.97 SS G_CDS: -2.94 Total: 6.03 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.16 Total: -51.84 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.34 Total: -21.11 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.76 -7.63 -40.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090550685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.579 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds