Wall clock time and date at job start Sat Apr 11 2020 05:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38323 * 119.90324 * 2 1 4 4 C 1.38292 * 120.38477 * 179.72535 * 3 2 1 5 5 C 1.38247 * 120.18221 * 0.55510 * 4 3 2 6 6 F 1.35104 * 120.08989 * 179.70332 * 5 4 3 7 7 C 1.39873 * 119.81063 * 359.71902 * 5 4 3 8 8 C 1.47546 * 120.19142 * 179.97438 * 7 5 4 9 9 O 1.21580 * 120.00394 * 270.02672 * 8 7 5 10 10 N 1.34780 * 119.99609 * 90.02473 * 8 7 5 11 11 C 1.46497 * 119.99688 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46302 * 35.00180 * 11 10 8 13 13 C 1.53038 * 109.46176 * 275.02811 * 11 10 8 14 14 C 1.53189 * 109.31566 * 178.61686 * 13 11 10 15 15 N 1.46925 * 108.77650 * 54.63575 * 14 13 11 16 16 C 1.36932 * 120.63608 * 126.36933 * 15 14 13 17 17 H 1.08004 * 119.99796 * 331.83110 * 16 15 14 18 18 C 1.38817 * 120.00347 * 151.82664 * 16 15 14 19 19 N 1.31624 * 119.99775 * 343.09281 * 18 16 15 20 20 Si 1.86799 * 120.00147 * 163.09227 * 18 16 15 21 21 H 1.48503 * 109.47192 * 59.99954 * 20 18 16 22 22 H 1.48499 * 109.46870 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47127 * 300.00297 * 20 18 16 24 24 C 1.46934 * 118.73614 * 306.39221 * 15 14 13 25 25 C 1.53047 * 109.45877 * 154.97233 * 11 10 8 26 26 H 1.08996 * 109.49410 * 301.33793 * 25 11 10 27 27 O 1.42900 * 109.49363 * 61.43460 * 25 11 10 28 28 C 1.38198 * 119.90408 * 180.27630 * 2 1 3 29 29 F 1.35095 * 120.10007 * 359.97438 * 28 2 1 30 30 H 1.09004 * 109.46897 * 269.72563 * 1 2 3 31 31 H 1.08996 * 109.47583 * 29.72462 * 1 2 3 32 32 H 1.08996 * 109.47103 * 149.73015 * 1 2 3 33 33 H 1.08004 * 119.81088 * 359.97438 * 3 2 1 34 34 H 1.07989 * 119.90926 * 180.27354 * 4 3 2 35 35 H 0.96999 * 120.00052 * 0.02562 * 10 8 7 36 36 H 1.09006 * 109.49543 * 298.56623 * 13 11 10 37 37 H 1.09000 * 109.49938 * 58.62847 * 13 11 10 38 38 H 1.09000 * 109.59132 * 174.41887 * 14 13 11 39 39 H 1.08996 * 109.58696 * 294.84678 * 14 13 11 40 40 H 0.96998 * 119.99571 * 179.97438 * 19 18 16 41 41 H 1.09001 * 109.58568 * 173.39775 * 24 15 14 42 42 H 1.09001 * 109.58518 * 293.67982 * 24 15 14 43 43 H 0.96707 * 113.99673 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1991 0.0000 4 6 3.5795 1.2107 0.0057 5 6 4.2845 0.0216 -0.0001 6 9 5.6355 0.0351 -0.0005 7 6 3.5953 -1.1955 -0.0058 8 6 4.3393 -2.4696 -0.0126 9 8 4.6458 -2.9891 -1.0683 10 7 4.6793 -3.0576 1.1515 11 6 5.4186 -4.3223 1.1448 12 1 6.1108 -4.3339 0.3030 13 6 4.4350 -5.4872 1.0121 14 6 5.2137 -6.8057 0.9707 15 7 6.0809 -6.8802 2.1543 16 6 6.0315 -7.9650 2.9884 17 1 5.1170 -8.5317 3.0837 18 6 7.1567 -8.3365 3.7115 19 7 8.3416 -7.8796 3.3657 20 14 6.9892 -9.4848 5.1753 21 1 6.4080 -10.7760 4.7277 22 1 8.3277 -9.7243 5.7722 23 1 6.0986 -8.8666 6.1901 24 6 7.0019 -5.7681 2.4264 25 6 6.2029 -4.4614 2.4517 26 1 6.8866 -3.6191 2.5570 27 8 5.2936 -4.4793 3.5539 28 6 2.1960 -1.1980 -0.0058 29 9 1.5206 -2.3680 -0.0109 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3634 0.8924 -0.5095 32 1 -0.3633 -0.8875 -0.5180 33 1 1.6519 2.1317 -0.0004 34 1 4.1100 2.1513 0.0101 35 1 4.4345 -2.6433 1.9938 36 1 3.7582 -5.4910 1.8667 37 1 3.8598 -5.3748 0.0931 38 1 4.5156 -7.6428 0.9760 39 1 5.8236 -6.8417 0.0680 40 1 9.1278 -8.1389 3.8712 41 1 7.4837 -5.9206 3.3922 42 1 7.7591 -5.7211 1.6437 43 1 5.7226 -4.5658 4.4163 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090550685.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:57 Heat of formation + Delta-G solvation = -150.313529 kcal Electronic energy + Delta-G solvation = -30270.983774 eV Core-core repulsion = 25758.749727 eV Total energy + Delta-G solvation = -4512.234047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.23701 -50.19622 -41.40364 -40.03161 -39.25787 -36.55126 -35.87571 -34.16596 -33.60280 -32.29669 -31.09066 -30.70372 -27.77094 -27.19907 -25.42422 -24.10421 -23.56265 -23.08485 -21.64200 -21.08912 -19.48360 -19.18121 -18.68538 -18.47788 -17.84881 -17.27230 -17.05862 -16.83154 -16.79458 -16.53223 -16.04969 -15.80457 -15.68166 -15.56754 -15.45239 -15.22597 -14.95213 -14.54527 -14.28231 -14.07201 -13.88206 -13.72201 -13.21530 -13.18571 -12.94181 -12.85385 -12.72640 -12.64764 -12.63933 -12.42571 -12.30862 -12.09801 -11.89528 -11.58252 -11.25739 -10.81881 -10.60317 -10.23726 -10.19941 -9.70354 -8.71176 -7.89689 -5.34635 -0.37693 -0.17790 1.18212 1.48604 1.49630 1.57406 1.85850 2.18445 2.50577 2.62038 3.18633 3.23634 3.29740 3.35056 3.59482 3.62176 3.68026 3.78243 3.91989 3.96071 4.26031 4.30899 4.35653 4.53204 4.57968 4.63047 4.75458 4.77260 4.78329 4.81120 4.86058 4.94170 4.99832 5.11347 5.17086 5.20531 5.28294 5.36136 5.50664 5.62787 5.62863 6.25852 6.34960 6.84816 6.91151 7.11935 7.78886 8.33055 9.17012 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021569 B = 0.002824 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.830098 B = 9911.458165 C =10334.944413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.122 4.122 3 C -0.029 4.029 4 C -0.142 4.142 5 C 0.134 3.866 6 F -0.137 7.137 7 C -0.216 4.216 8 C 0.560 3.440 9 O -0.569 6.569 10 N -0.692 5.692 11 C 0.166 3.834 12 H 0.075 0.925 13 C -0.119 4.119 14 C 0.147 3.853 15 N -0.597 5.597 16 C -0.259 4.259 17 H 0.062 0.938 18 C -0.045 4.045 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.275 1.275 24 C 0.152 3.848 25 C 0.092 3.908 26 H 0.069 0.931 27 O -0.561 6.561 28 C 0.134 3.866 29 F -0.137 7.137 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.060 0.940 33 H 0.198 0.802 34 H 0.184 0.816 35 H 0.414 0.586 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.012 0.988 40 H 0.252 0.748 41 H 0.076 0.924 42 H 0.005 0.995 43 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.532 24.755 -3.086 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.123 4.123 3 C -0.047 4.047 4 C -0.160 4.160 5 C 0.114 3.886 6 F -0.116 7.116 7 C -0.221 4.221 8 C 0.346 3.654 9 O -0.448 6.448 10 N -0.342 5.342 11 C 0.061 3.939 12 H 0.093 0.907 13 C -0.159 4.159 14 C 0.020 3.980 15 N -0.320 5.320 16 C -0.389 4.389 17 H 0.080 0.920 18 C -0.241 4.241 19 N -0.581 5.581 20 Si 0.798 3.202 21 H -0.207 1.207 22 H -0.220 1.220 23 H -0.201 1.201 24 C 0.025 3.975 25 C 0.031 3.969 26 H 0.087 0.913 27 O -0.368 6.368 28 C 0.114 3.886 29 F -0.115 7.115 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.079 0.921 33 H 0.215 0.785 34 H 0.201 0.799 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.030 0.970 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.023 0.977 43 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -14.566 24.317 -4.227 28.659 hybrid contribution 1.151 -1.564 1.229 2.298 sum -13.414 22.754 -2.998 26.583 Atomic orbital electron populations 1.20870 0.87149 1.04769 1.04309 1.20361 0.99163 0.90445 1.02329 1.21491 0.92361 0.98540 0.92267 1.21592 0.95456 0.96788 1.02208 1.17656 0.76828 0.93016 1.01092 1.91543 1.29195 1.97272 1.93541 1.19870 0.93889 0.93592 1.14737 1.18331 0.78737 0.84319 0.84052 1.90790 1.55786 1.65966 1.32292 1.46022 1.56143 1.23584 1.08440 1.20838 0.93354 0.82757 0.96908 0.90706 1.22075 0.98075 0.94971 1.00818 1.20946 0.92707 0.95484 0.88841 1.44085 1.44383 1.18128 1.25424 1.19401 0.94956 1.06037 1.18461 0.92021 1.25739 0.94407 1.00735 1.03198 1.70160 0.97741 1.49441 1.40800 0.85315 0.76282 0.78869 0.79769 1.20690 1.21959 1.20091 1.21314 0.90394 0.85234 1.00577 1.22485 0.90659 0.97782 0.85955 0.91319 1.86323 1.36651 1.96585 1.17207 1.17488 0.86939 0.82519 1.01629 1.91520 1.79621 1.46863 1.93490 0.89134 0.87370 0.92137 0.78457 0.79918 0.74931 0.91558 0.92804 0.92306 0.97000 0.93913 0.90573 0.97679 0.76303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.83 71.24 0.70 -0.26 16 2 C -0.12 -1.66 5.88 -19.85 -0.12 -1.77 16 3 C -0.03 -0.22 9.68 22.30 0.22 -0.01 16 4 C -0.14 -1.62 10.01 22.28 0.22 -1.39 16 5 C 0.13 2.90 7.29 22.67 0.17 3.07 16 6 F -0.14 -3.52 16.83 44.97 0.76 -2.76 16 7 C -0.22 -5.80 5.64 -20.02 -0.11 -5.91 16 8 C 0.56 19.60 6.51 86.70 0.56 20.16 16 9 O -0.57 -24.56 16.77 -3.97 -0.07 -24.62 16 10 N -0.69 -22.89 5.05 -445.57 -2.25 -25.14 16 11 C 0.17 6.33 2.20 45.02 0.10 6.43 16 12 H 0.07 3.15 7.58 -2.39 -0.02 3.14 16 13 C -0.12 -4.84 5.51 30.67 0.17 -4.67 16 14 C 0.15 6.72 6.52 86.36 0.56 7.28 16 15 N -0.60 -30.56 2.93 -699.08 -2.05 -32.61 16 16 C -0.26 -14.29 9.58 84.04 0.81 -13.48 16 17 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 18 C -0.05 -2.50 4.92 84.86 0.42 -2.09 16 19 N -0.94 -54.21 11.20 21.65 0.24 -53.96 16 20 Si 0.97 44.37 29.59 68.60 2.03 46.40 16 21 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 C 0.15 7.17 4.95 86.36 0.43 7.60 16 25 C 0.09 3.45 3.38 30.67 0.10 3.56 16 26 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 27 O -0.56 -19.71 12.08 -148.98 -1.80 -21.51 16 28 C 0.13 3.11 7.23 22.67 0.16 3.27 16 29 F -0.14 -3.79 16.03 44.97 0.72 -3.07 16 30 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.11 0.25 8.08 -2.39 -0.02 0.23 16 32 H 0.06 0.71 7.63 -2.39 -0.02 0.69 16 33 H 0.20 -0.38 8.06 -2.91 -0.02 -0.40 16 34 H 0.18 0.86 8.06 -2.92 -0.02 0.83 16 35 H 0.41 11.92 8.24 -92.71 -0.76 11.16 16 36 H 0.07 2.76 7.61 -2.38 -0.02 2.74 16 37 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 2.63 7.93 -2.39 -0.02 2.62 16 39 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 41 H 0.08 3.91 6.06 -2.39 -0.01 3.89 16 42 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 43 H 0.39 11.63 9.08 -74.05 -0.67 10.96 16 Total: -1.00 -74.85 366.15 1.61 -73.24 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.36 Total: 22.25 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 4.39 Total: 21.79 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -4.06 Total: -111.71 kcal Atomic # 8 Polarization: -44.27 SS G_CDS: -1.87 Total: -46.13 kcal Atomic # 9 Polarization: -7.31 SS G_CDS: 1.48 Total: -5.83 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -74.85 1.61 -73.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090550685.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.071 kcal (2) G-P(sol) polarization free energy of solvation -74.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds