Wall clock time and date at job start Sat Apr 11 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38332 * 119.90689 * 2 1 4 4 C 1.38278 * 120.38510 * 179.97438 * 3 2 1 5 5 C 1.38243 * 120.19339 * 359.97438 * 4 3 2 6 6 F 1.35096 * 120.10264 * 179.97438 * 5 4 3 7 7 C 1.39884 * 119.80149 * 359.97438 * 5 4 3 8 8 C 1.47547 * 120.18673 * 179.97438 * 7 5 4 9 9 O 1.21576 * 120.00285 * 89.99909 * 8 7 5 10 10 N 1.34778 * 119.99407 * 269.99576 * 8 7 5 11 11 C 1.46504 * 119.99477 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.44993 * 325.03449 * 11 10 8 13 13 C 1.53034 * 109.46145 * 85.00409 * 11 10 8 14 14 C 1.53192 * 109.31694 * 181.38580 * 13 11 10 15 15 N 1.46926 * 108.77281 * 305.36145 * 14 13 11 16 16 C 1.36931 * 120.63544 * 233.58734 * 15 14 13 17 17 H 1.07999 * 120.00412 * 152.32881 * 16 15 14 18 18 C 1.38816 * 119.99584 * 332.05021 * 16 15 14 19 19 N 1.31619 * 120.00062 * 343.04333 * 18 16 15 20 20 Si 1.86802 * 120.00048 * 163.04333 * 18 16 15 21 21 H 1.48502 * 109.47018 * 59.99742 * 20 18 16 22 22 H 1.48503 * 109.47102 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46651 * 299.99939 * 20 18 16 24 24 C 1.46934 * 118.73613 * 53.85906 * 15 14 13 25 25 C 1.53040 * 109.46040 * 205.07073 * 11 10 8 26 26 H 1.08999 * 109.49785 * 298.57046 * 25 11 10 27 27 O 1.42901 * 109.50051 * 58.66212 * 25 11 10 28 28 C 1.38201 * 119.90858 * 180.25169 * 2 1 3 29 29 F 1.35110 * 120.09114 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.46675 * 90.00132 * 1 2 3 31 31 H 1.08998 * 109.47227 * 210.00576 * 1 2 3 32 32 H 1.09000 * 109.47021 * 330.00406 * 1 2 3 33 33 H 1.07996 * 119.80590 * 359.97019 * 3 2 1 34 34 H 1.08002 * 119.90277 * 180.02562 * 4 3 2 35 35 H 0.96996 * 120.00719 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.50036 * 61.43322 * 13 11 10 37 37 H 1.09006 * 109.52424 * 301.35479 * 13 11 10 38 38 H 1.08999 * 109.58785 * 185.57742 * 14 13 11 39 39 H 1.08992 * 109.58935 * 65.14811 * 14 13 11 40 40 H 0.97002 * 119.99822 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.58630 * 65.93036 * 24 15 14 42 42 H 1.09005 * 109.58509 * 186.34775 * 24 15 14 43 43 H 0.96701 * 114.00412 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1991 0.0000 4 6 3.5794 1.2106 0.0005 5 6 4.2846 0.0216 0.0016 6 9 5.6355 0.0350 0.0016 7 6 3.5952 -1.1956 0.0027 8 6 4.3393 -2.4696 0.0033 9 8 4.6464 -2.9939 1.0564 10 7 4.6786 -3.0523 -1.1637 11 6 5.4180 -4.3171 -1.1632 12 1 6.1101 -4.3325 -0.3214 13 6 4.4344 -5.4826 -1.0359 14 6 5.2131 -6.8013 -1.0009 15 7 6.0802 -6.8701 -2.1850 16 6 6.0313 -7.9513 -3.0238 17 1 6.2908 -7.8385 -4.0660 18 6 5.6537 -9.1938 -2.5331 19 7 5.6660 -9.4208 -1.2367 20 14 5.1280 -10.5434 -3.7128 21 1 6.2438 -10.8493 -4.6438 22 1 4.7758 -11.7638 -2.9434 23 1 3.9460 -10.0898 -4.4889 24 6 7.0051 -5.7593 -2.4488 25 6 6.2023 -4.4498 -2.4706 26 1 5.5088 -4.4592 -3.3115 27 8 7.0987 -3.3448 -2.6034 28 6 2.1961 -1.1979 -0.0053 29 9 1.5205 -2.3680 -0.0109 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6520 2.1317 -0.0005 34 1 4.1100 2.1514 0.0009 35 1 4.4340 -2.6339 -2.0040 36 1 3.7575 -5.4824 -1.8904 37 1 3.8592 -5.3751 -0.1162 38 1 4.5150 -7.6383 -1.0101 39 1 5.8232 -6.8416 -0.0985 40 1 5.4024 -10.2892 -0.8939 41 1 7.7584 -5.7163 -1.6621 42 1 7.4898 -5.9086 -3.4137 43 1 7.6298 -3.3640 -3.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090550687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:03 Heat of formation + Delta-G solvation = -128.155662 kcal Electronic energy + Delta-G solvation = -30171.775313 eV Core-core repulsion = 25660.502103 eV Total energy + Delta-G solvation = -4511.273210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.29379 -49.25007 -40.08248 -38.98071 -37.80852 -35.40671 -34.35325 -33.08349 -32.03131 -31.32756 -29.88332 -28.51603 -27.12749 -25.51276 -24.20313 -22.60179 -22.28536 -21.76870 -20.38746 -19.55909 -18.49443 -17.80197 -17.61571 -16.97987 -16.67262 -16.36872 -15.92880 -15.80018 -15.57483 -15.17380 -14.85106 -14.70930 -14.29819 -14.17372 -13.91980 -13.75854 -13.63208 -13.38018 -13.21008 -12.80833 -12.53318 -12.30861 -12.17352 -12.13248 -11.97935 -11.95547 -11.56982 -11.12173 -10.86274 -10.71562 -10.35719 -10.28552 -10.06098 -9.92574 -9.74122 -9.47806 -9.37942 -8.96222 -8.81796 -8.46605 -6.77646 -5.84881 -3.29535 0.41716 0.55914 2.53829 2.83046 3.16870 3.35300 3.41482 3.42146 3.46750 4.00177 4.18210 4.31979 4.36468 4.46695 4.53986 4.62852 5.01132 5.18990 5.25743 5.29393 5.32517 5.38240 5.44238 5.47194 5.53928 5.54452 5.69098 5.74499 5.77153 5.96191 6.09493 6.26845 6.30347 6.47329 6.50276 6.66232 6.76784 6.80328 7.28551 7.57148 7.62010 7.72452 7.92086 8.25007 8.37558 9.12827 9.75113 10.31228 11.23614 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.002976 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.901695 B = 9407.436215 C =10315.760180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.133 4.133 3 C -0.051 4.051 4 C -0.162 4.162 5 C 0.158 3.842 6 F -0.119 7.119 7 C -0.189 4.189 8 C 0.563 3.437 9 O -0.520 6.520 10 N -0.700 5.700 11 C 0.162 3.838 12 H 0.090 0.910 13 C -0.147 4.147 14 C 0.172 3.828 15 N -0.588 5.588 16 C -0.261 4.261 17 H 0.067 0.933 18 C 0.006 3.994 19 N -0.899 5.899 20 Si 0.905 3.095 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.122 3.878 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.570 6.570 28 C 0.160 3.840 29 F -0.117 7.117 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.024 0.976 40 H 0.257 0.743 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.566 23.436 -0.619 24.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.134 4.134 3 C -0.070 4.070 4 C -0.181 4.181 5 C 0.138 3.862 6 F -0.097 7.097 7 C -0.194 4.194 8 C 0.346 3.654 9 O -0.396 6.396 10 N -0.349 5.349 11 C 0.058 3.942 12 H 0.108 0.892 13 C -0.187 4.187 14 C 0.046 3.954 15 N -0.312 5.312 16 C -0.391 4.391 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.542 5.542 20 Si 0.735 3.265 21 H -0.208 1.208 22 H -0.215 1.215 23 H -0.209 1.209 24 C -0.006 4.006 25 C 0.019 3.981 26 H 0.075 0.925 27 O -0.375 6.375 28 C 0.140 3.860 29 F -0.095 7.095 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.231 0.769 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.597 22.965 0.807 24.534 hybrid contribution 0.083 -0.916 -1.469 1.733 sum -8.514 22.049 -0.661 23.645 Atomic orbital electron populations 1.20746 0.89092 1.03874 1.03275 1.19948 0.97773 0.91248 1.04410 1.20876 0.92877 0.97546 0.95652 1.21145 0.94809 0.97178 1.04960 1.17316 0.77401 0.92312 0.99200 1.91600 1.27831 1.97168 1.93093 1.20075 0.93231 0.94900 1.11221 1.17674 0.79508 0.83316 0.84871 1.90841 1.53815 1.63865 1.31059 1.46076 1.56605 1.24648 1.07553 1.21113 0.92980 0.81934 0.98145 0.89209 1.22620 0.98307 0.96486 1.01308 1.20833 0.93038 0.93141 0.88414 1.44062 1.40350 1.18317 1.28460 1.19121 1.43392 0.86321 0.90232 0.91545 1.25087 1.01463 0.97025 0.95791 1.70023 1.50082 1.22823 1.11311 0.86336 0.78833 0.81176 0.80184 1.20825 1.21539 1.20932 1.21614 0.92156 0.87157 0.99702 1.22868 0.91391 0.87639 0.96197 0.92486 1.86494 1.57141 1.47029 1.46808 1.17143 0.87381 0.81809 0.99662 1.91583 1.79391 1.45486 1.93064 0.90349 0.90752 0.90509 0.83508 0.83343 0.76854 0.92202 0.91852 0.88759 0.95747 0.93343 0.95209 0.92060 0.77963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 9.82 36.00 0.35 -0.34 16 2 C -0.13 -1.14 5.88 -104.60 -0.62 -1.75 16 3 C -0.05 -0.34 9.68 -39.53 -0.38 -0.72 16 4 C -0.16 -1.30 10.01 -39.56 -0.40 -1.69 16 5 C 0.16 1.89 7.29 -38.96 -0.28 1.60 16 6 F -0.12 -1.64 16.83 2.25 0.04 -1.60 16 7 C -0.19 -2.62 5.64 -104.86 -0.59 -3.22 16 8 C 0.56 9.90 6.51 -12.46 -0.08 9.82 16 9 O -0.52 -11.21 16.77 5.30 0.09 -11.12 16 10 N -0.70 -11.53 4.92 -54.81 -0.27 -11.80 16 11 C 0.16 3.06 2.12 -67.89 -0.14 2.91 16 12 H 0.09 1.94 7.57 -51.93 -0.39 1.55 16 13 C -0.15 -3.00 5.65 -26.61 -0.15 -3.15 16 14 C 0.17 4.19 5.30 -3.71 -0.02 4.17 16 15 N -0.59 -14.54 2.99 -172.05 -0.51 -15.06 16 16 C -0.26 -7.02 9.58 -15.06 -0.14 -7.16 16 17 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 18 C 0.01 0.16 4.92 -17.43 -0.09 0.07 16 19 N -0.90 -26.00 11.18 55.49 0.62 -25.38 16 20 Si 0.91 21.37 29.59 -169.99 -5.03 16.34 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C 0.12 2.50 6.17 -3.48 -0.02 2.48 16 25 C 0.08 1.40 3.16 -26.39 -0.08 1.32 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 O -0.57 -8.81 13.16 -35.23 -0.46 -9.27 16 28 C 0.16 1.95 7.23 -38.97 -0.28 1.66 16 29 F -0.12 -1.61 16.04 2.25 0.04 -1.58 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.52 7.64 -51.93 -0.40 0.12 16 32 H 0.08 0.31 8.08 -51.93 -0.42 -0.11 16 33 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 34 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.40 5.55 8.59 -40.82 -0.35 5.20 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.09 2.54 6.04 -51.93 -0.31 2.22 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.85 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.37 4.13 9.09 45.56 0.41 4.54 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -33.65 367.85 -7.68 -41.33 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -4.80 Total: 6.61 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -2.93 Total: 5.99 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: -0.16 Total: -52.24 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -0.37 Total: -20.39 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.07 Total: -3.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.65 -7.68 -41.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090550687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.823 kcal (2) G-P(sol) polarization free energy of solvation -33.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds