Wall clock time and date at job start Sat Apr 11 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38332 * 119.90689 * 2 1 4 4 C 1.38278 * 120.38510 * 179.97438 * 3 2 1 5 5 C 1.38243 * 120.19339 * 359.97438 * 4 3 2 6 6 F 1.35096 * 120.10264 * 179.97438 * 5 4 3 7 7 C 1.39884 * 119.80149 * 359.97438 * 5 4 3 8 8 C 1.47547 * 120.18673 * 179.97438 * 7 5 4 9 9 O 1.21576 * 120.00285 * 89.99909 * 8 7 5 10 10 N 1.34778 * 119.99407 * 269.99576 * 8 7 5 11 11 C 1.46504 * 119.99477 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.44993 * 325.03449 * 11 10 8 13 13 C 1.53034 * 109.46145 * 85.00409 * 11 10 8 14 14 C 1.53192 * 109.31694 * 181.38580 * 13 11 10 15 15 N 1.46926 * 108.77281 * 305.36145 * 14 13 11 16 16 C 1.36931 * 120.63544 * 233.58734 * 15 14 13 17 17 H 1.07999 * 120.00412 * 152.32881 * 16 15 14 18 18 C 1.38816 * 119.99584 * 332.05021 * 16 15 14 19 19 N 1.31619 * 120.00062 * 343.04333 * 18 16 15 20 20 Si 1.86802 * 120.00048 * 163.04333 * 18 16 15 21 21 H 1.48502 * 109.47018 * 59.99742 * 20 18 16 22 22 H 1.48503 * 109.47102 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46651 * 299.99939 * 20 18 16 24 24 C 1.46934 * 118.73613 * 53.85906 * 15 14 13 25 25 C 1.53040 * 109.46040 * 205.07073 * 11 10 8 26 26 H 1.08999 * 109.49785 * 298.57046 * 25 11 10 27 27 O 1.42901 * 109.50051 * 58.66212 * 25 11 10 28 28 C 1.38201 * 119.90858 * 180.25169 * 2 1 3 29 29 F 1.35110 * 120.09114 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.46675 * 90.00132 * 1 2 3 31 31 H 1.08998 * 109.47227 * 210.00576 * 1 2 3 32 32 H 1.09000 * 109.47021 * 330.00406 * 1 2 3 33 33 H 1.07996 * 119.80590 * 359.97019 * 3 2 1 34 34 H 1.08002 * 119.90277 * 180.02562 * 4 3 2 35 35 H 0.96996 * 120.00719 * 0.02562 * 10 8 7 36 36 H 1.09004 * 109.50036 * 61.43322 * 13 11 10 37 37 H 1.09006 * 109.52424 * 301.35479 * 13 11 10 38 38 H 1.08999 * 109.58785 * 185.57742 * 14 13 11 39 39 H 1.08992 * 109.58935 * 65.14811 * 14 13 11 40 40 H 0.97002 * 119.99822 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.58630 * 65.93036 * 24 15 14 42 42 H 1.09005 * 109.58509 * 186.34775 * 24 15 14 43 43 H 0.96701 * 114.00412 * 179.97438 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1967 1.1991 0.0000 4 6 3.5794 1.2106 0.0005 5 6 4.2846 0.0216 0.0016 6 9 5.6355 0.0350 0.0016 7 6 3.5952 -1.1956 0.0027 8 6 4.3393 -2.4696 0.0033 9 8 4.6464 -2.9939 1.0564 10 7 4.6786 -3.0523 -1.1637 11 6 5.4180 -4.3171 -1.1632 12 1 6.1101 -4.3325 -0.3214 13 6 4.4344 -5.4826 -1.0359 14 6 5.2131 -6.8013 -1.0009 15 7 6.0802 -6.8701 -2.1850 16 6 6.0313 -7.9513 -3.0238 17 1 6.2908 -7.8385 -4.0660 18 6 5.6537 -9.1938 -2.5331 19 7 5.6660 -9.4208 -1.2367 20 14 5.1280 -10.5434 -3.7128 21 1 6.2438 -10.8493 -4.6438 22 1 4.7758 -11.7638 -2.9434 23 1 3.9460 -10.0898 -4.4889 24 6 7.0051 -5.7593 -2.4488 25 6 6.2023 -4.4498 -2.4706 26 1 5.5088 -4.4592 -3.3115 27 8 7.0987 -3.3448 -2.6034 28 6 2.1961 -1.1979 -0.0053 29 9 1.5205 -2.3680 -0.0109 30 1 -0.3632 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6520 2.1317 -0.0005 34 1 4.1100 2.1514 0.0009 35 1 4.4340 -2.6339 -2.0040 36 1 3.7575 -5.4824 -1.8904 37 1 3.8592 -5.3751 -0.1162 38 1 4.5150 -7.6383 -1.0101 39 1 5.8232 -6.8416 -0.0985 40 1 5.4024 -10.2892 -0.8939 41 1 7.7584 -5.7163 -1.6621 42 1 7.4898 -5.9086 -3.4137 43 1 7.6298 -3.3640 -3.4113 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090550687.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:02 Heat of formation + Delta-G solvation = -153.041037 kcal Electronic energy + Delta-G solvation = -30172.854424 eV Core-core repulsion = 25660.502103 eV Total energy + Delta-G solvation = -4512.352321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.23592 -50.18683 -41.40458 -40.01678 -39.23228 -37.03614 -35.92559 -34.08570 -33.57552 -32.38520 -31.51872 -30.19003 -27.76830 -27.23053 -25.43394 -24.09212 -23.59532 -23.08548 -21.74171 -21.20768 -19.45990 -19.05337 -18.67762 -18.44289 -18.11481 -17.73142 -17.05571 -16.84970 -16.75206 -16.52734 -16.09446 -15.78251 -15.70489 -15.61515 -15.41716 -15.08123 -14.94026 -14.55354 -14.27899 -14.07399 -13.95857 -13.70920 -13.33379 -13.18842 -13.03604 -12.91764 -12.73055 -12.70041 -12.65422 -12.46652 -12.19267 -12.13001 -11.93219 -11.57239 -11.24609 -11.08243 -10.60966 -10.25400 -10.20207 -9.70257 -8.80901 -7.92673 -5.41129 -0.37795 -0.17910 1.19665 1.47272 1.50271 1.57121 1.84650 2.18064 2.47540 2.62500 3.03243 3.22756 3.24014 3.33446 3.56310 3.60565 3.68762 3.78323 3.95217 3.96383 4.13029 4.30605 4.34970 4.44839 4.56627 4.59912 4.74943 4.76532 4.78500 4.81205 4.83769 4.93290 4.94515 5.05995 5.16961 5.20667 5.24683 5.31117 5.54874 5.61594 5.62941 6.24024 6.30618 6.83555 6.91843 7.05949 7.73909 8.27449 9.14788 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.017696 B = 0.002976 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.901695 B = 9407.436215 C =10315.760180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.121 4.121 3 C -0.028 4.028 4 C -0.142 4.142 5 C 0.134 3.866 6 F -0.138 7.138 7 C -0.215 4.215 8 C 0.560 3.440 9 O -0.573 6.573 10 N -0.689 5.689 11 C 0.167 3.833 12 H 0.056 0.944 13 C -0.129 4.129 14 C 0.182 3.818 15 N -0.603 5.603 16 C -0.269 4.269 17 H 0.079 0.921 18 C -0.051 4.051 19 N -0.937 5.937 20 Si 0.974 3.026 21 H -0.272 1.272 22 H -0.297 1.297 23 H -0.274 1.274 24 C 0.119 3.881 25 C 0.103 3.897 26 H 0.076 0.924 27 O -0.571 6.571 28 C 0.134 3.866 29 F -0.137 7.137 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.199 0.801 34 H 0.184 0.816 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.065 0.935 39 H -0.009 1.009 40 H 0.251 0.749 41 H 0.012 0.988 42 H 0.080 0.920 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.147 27.185 -2.848 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.122 4.122 3 C -0.046 4.046 4 C -0.160 4.160 5 C 0.114 3.886 6 F -0.116 7.116 7 C -0.220 4.220 8 C 0.346 3.654 9 O -0.452 6.452 10 N -0.338 5.338 11 C 0.063 3.937 12 H 0.074 0.926 13 C -0.169 4.169 14 C 0.056 3.944 15 N -0.327 5.327 16 C -0.398 4.398 17 H 0.097 0.903 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.801 3.199 21 H -0.197 1.197 22 H -0.224 1.224 23 H -0.200 1.200 24 C -0.008 4.008 25 C 0.042 3.958 26 H 0.094 0.906 27 O -0.379 6.379 28 C 0.114 3.886 29 F -0.115 7.115 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.216 0.784 34 H 0.201 0.799 35 H 0.249 0.751 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.009 0.991 40 H 0.060 0.940 41 H 0.030 0.970 42 H 0.099 0.901 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -10.165 26.769 -1.490 28.673 hybrid contribution 0.598 -1.947 -0.754 2.172 sum -9.568 24.822 -2.244 26.697 Atomic orbital electron populations 1.20869 0.87108 1.04728 1.04367 1.20363 0.99159 0.90399 1.02313 1.21490 0.92301 0.98550 0.92234 1.21590 0.95470 0.96716 1.02226 1.17684 0.76826 0.93043 1.01008 1.91548 1.29275 1.97267 1.93507 1.19867 0.93888 0.93491 1.14794 1.18343 0.78718 0.84335 0.84045 1.90798 1.55937 1.65717 1.32795 1.45880 1.55928 1.23628 1.08330 1.20780 0.92389 0.82529 0.98035 0.92591 1.22330 0.98108 0.95222 1.01247 1.20521 0.92331 0.94106 0.87468 1.44263 1.41379 1.19085 1.28007 1.19558 1.42413 0.86854 0.91025 0.90333 1.25936 1.02008 0.99490 0.97210 1.70204 1.51677 1.23059 1.13339 0.85252 0.78718 0.77872 0.78046 1.19732 1.22378 1.20000 1.21776 0.91708 0.87384 0.99927 1.22393 0.91295 0.86497 0.95583 0.90595 1.86469 1.57220 1.45473 1.48697 1.17494 0.86867 0.82550 1.01715 1.91528 1.79598 1.46880 1.93503 0.89009 0.92226 0.87372 0.78371 0.79894 0.75060 0.91023 0.92874 0.91626 0.99058 0.93964 0.96970 0.90145 0.75228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.82 71.24 0.70 -0.29 16 2 C -0.12 -1.70 5.88 -19.85 -0.12 -1.81 16 3 C -0.03 -0.22 9.68 22.30 0.22 -0.01 16 4 C -0.14 -1.70 10.01 22.28 0.22 -1.47 16 5 C 0.13 3.06 7.29 22.67 0.17 3.22 16 6 F -0.14 -3.78 16.83 44.97 0.76 -3.02 16 7 C -0.22 -6.03 5.64 -20.02 -0.11 -6.14 16 8 C 0.56 20.65 6.51 86.70 0.56 21.21 16 9 O -0.57 -26.54 16.77 -3.96 -0.07 -26.60 16 10 N -0.69 -23.22 4.92 -445.58 -2.19 -25.41 16 11 C 0.17 6.55 2.12 45.02 0.10 6.65 16 12 H 0.06 2.59 7.57 -2.39 -0.02 2.58 16 13 C -0.13 -5.52 5.65 30.67 0.17 -5.35 16 14 C 0.18 9.42 5.30 86.36 0.46 9.88 16 15 N -0.60 -30.54 2.99 -698.25 -2.09 -32.63 16 16 C -0.27 -14.53 9.58 84.04 0.81 -13.72 16 17 H 0.08 3.99 7.89 -2.91 -0.02 3.96 16 18 C -0.05 -2.83 4.92 84.86 0.42 -2.42 16 19 N -0.94 -56.50 11.18 21.65 0.24 -56.26 16 20 Si 0.97 44.40 29.59 68.60 2.03 46.43 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 C 0.12 4.90 6.17 86.50 0.53 5.43 16 25 C 0.10 3.54 3.16 30.82 0.10 3.64 16 26 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 27 O -0.57 -16.71 13.16 -148.98 -1.96 -18.67 16 28 C 0.13 3.18 7.23 22.67 0.16 3.34 16 29 F -0.14 -3.89 16.04 44.97 0.72 -3.17 16 30 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.06 0.73 7.64 -2.39 -0.02 0.71 16 32 H 0.11 0.29 8.08 -2.39 -0.02 0.27 16 33 H 0.20 -0.35 8.06 -2.91 -0.02 -0.37 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.41 11.33 8.59 -92.71 -0.80 10.53 16 36 H 0.07 2.89 8.14 -2.38 -0.02 2.87 16 37 H 0.05 2.36 8.14 -2.38 -0.02 2.34 16 38 H 0.07 3.75 6.04 -2.39 -0.01 3.74 16 39 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 40 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 41 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.08 2.98 7.93 -2.38 -0.02 2.96 16 43 H 0.40 7.65 9.09 -74.06 -0.67 6.98 16 Total: -1.00 -79.74 367.85 1.43 -78.30 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -0.39 Total: 18.86 kcal Atomic # 6 Polarization: 17.78 SS G_CDS: 4.38 Total: 22.17 kcal Atomic # 7 Polarization: -110.26 SS G_CDS: -4.03 Total: -114.29 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -2.03 Total: -45.27 kcal Atomic # 9 Polarization: -7.67 SS G_CDS: 1.48 Total: -6.19 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -79.74 1.43 -78.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090550687.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.741 kcal (2) G-P(sol) polarization free energy of solvation -79.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds