Wall clock time and date at job start Sat Apr 11 2020 05:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38448 * 119.83920 * 2 1 4 4 C 1.37849 * 120.24013 * 179.97438 * 3 2 1 5 5 C 1.39686 * 119.92107 * 359.97438 * 4 3 2 6 6 C 1.47704 * 120.15114 * 179.97438 * 5 4 3 7 7 O 1.21570 * 119.99722 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99986 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99898 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.45931 * 34.97442 * 9 8 6 11 11 C 1.53039 * 109.46087 * 275.00395 * 9 8 6 12 12 C 1.53194 * 109.31275 * 178.62938 * 11 9 8 13 13 N 1.46924 * 108.77561 * 54.63430 * 12 11 9 14 14 C 1.36942 * 120.62968 * 126.11810 * 13 12 11 15 15 H 1.07992 * 119.99875 * 332.70380 * 14 13 12 16 16 C 1.38807 * 119.99880 * 152.70010 * 14 13 12 17 17 N 1.31624 * 120.00086 * 159.47314 * 16 14 13 18 18 Si 1.86803 * 120.00386 * 339.47592 * 16 14 13 19 19 H 1.48500 * 109.47214 * 93.00133 * 18 16 14 20 20 H 1.48499 * 109.47277 * 213.00605 * 18 16 14 21 21 H 1.48503 * 109.46657 * 333.00776 * 18 16 14 22 22 C 1.46926 * 118.73914 * 306.38788 * 13 12 11 23 23 C 1.53042 * 109.44801 * 154.94464 * 9 8 6 24 24 H 1.09004 * 109.49082 * 301.35996 * 23 9 8 25 25 O 1.42888 * 109.50144 * 61.42718 * 23 9 8 26 26 C 1.39762 * 119.69192 * 0.25793 * 5 4 3 27 27 F 1.35099 * 120.12094 * 179.72424 * 26 5 4 28 28 C 1.38381 * 119.84421 * 180.02562 * 2 1 3 29 29 F 1.35100 * 119.96178 * 0.02577 * 28 2 1 30 30 H 1.08997 * 109.46928 * 90.00120 * 1 2 3 31 31 H 1.09004 * 109.46580 * 209.99773 * 1 2 3 32 32 H 1.08994 * 109.47472 * 329.99835 * 1 2 3 33 33 H 1.07996 * 119.88189 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.03646 * 179.97438 * 4 3 2 35 35 H 0.97003 * 120.00214 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.50155 * 58.67817 * 11 9 8 37 37 H 1.09006 * 109.52485 * 298.59585 * 11 9 8 38 38 H 1.09007 * 109.58516 * 294.84393 * 12 11 9 39 39 H 1.09000 * 109.58479 * 174.42470 * 12 11 9 40 40 H 0.96999 * 120.00261 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58351 * 173.39714 * 22 13 12 42 42 H 1.08994 * 109.58658 * 293.82647 * 22 13 12 43 43 H 0.96701 * 114.00250 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5744 1.2106 0.0005 5 6 4.2796 0.0048 0.0016 6 6 5.7567 0.0092 0.0016 7 8 6.3676 -1.0418 0.0021 8 7 6.4270 1.1784 0.0011 9 6 7.8920 1.1827 0.0017 10 1 8.2578 0.3413 -0.5867 11 6 8.4017 1.0594 1.4394 12 6 9.9333 1.0298 1.4332 13 7 10.4263 2.2146 0.7178 14 6 11.3274 3.0608 1.3072 15 1 11.3594 3.1512 2.3829 16 6 12.1996 3.8021 0.5221 17 7 12.7695 4.8827 1.0119 18 14 12.5644 3.2663 -1.2299 19 1 11.6354 3.9548 -2.1617 20 1 13.9646 3.6212 -1.5747 21 1 12.3832 1.7970 -1.3460 22 6 9.9296 2.4777 -0.6397 23 6 8.3979 2.4911 -0.6102 24 1 8.0149 2.5897 -1.6259 25 8 7.9457 3.5930 0.1792 26 6 3.5811 -1.2057 -0.0033 27 9 4.2544 -2.3770 -0.0079 28 6 2.1957 -1.2003 -0.0005 29 9 1.5163 -2.3680 -0.0016 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6514 2.1336 0.0004 34 1 4.1084 2.1493 0.0001 35 1 5.9395 2.0170 0.0011 36 1 8.0219 0.1387 1.8824 37 1 8.0567 1.9131 2.0228 38 1 10.2793 0.1278 0.9283 39 1 10.3032 1.0418 2.4585 40 1 13.3787 5.4009 0.4632 41 1 10.2969 3.4451 -0.9821 42 1 10.2752 1.6938 -1.3135 43 1 8.2297 4.4563 -0.1512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090584660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:07 Heat of formation + Delta-G solvation = -118.068894 kcal Electronic energy + Delta-G solvation = -29935.541336 eV Core-core repulsion = 25424.705521 eV Total energy + Delta-G solvation = -4510.835815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.74408 -48.78788 -40.42268 -39.10730 -38.03553 -35.05910 -34.59111 -33.41693 -32.11010 -30.84236 -30.16940 -29.47269 -27.98555 -25.16489 -23.37260 -23.24359 -22.88464 -21.78780 -20.63821 -19.80475 -18.56855 -17.76225 -17.36038 -17.31038 -16.72676 -16.46705 -16.21057 -15.64728 -15.33482 -15.20867 -14.94429 -14.76064 -14.56968 -14.34546 -14.21408 -13.97586 -13.89661 -13.55867 -13.39900 -12.82797 -12.74894 -12.48375 -12.44122 -12.25963 -12.09667 -12.01531 -11.74796 -11.52089 -11.03315 -10.75603 -10.49182 -10.32623 -10.16817 -9.95108 -9.54669 -9.45495 -9.34551 -9.18465 -8.87387 -8.66825 -7.01614 -5.99106 -3.34177 0.13076 0.49054 2.41533 2.89217 3.21611 3.26111 3.39537 3.43822 3.45857 3.92553 4.09475 4.13412 4.38608 4.45301 4.46473 4.57084 4.84370 4.90182 5.03021 5.03971 5.11222 5.27254 5.29066 5.31073 5.43457 5.45897 5.56044 5.59035 5.68010 5.69598 5.92756 6.02117 6.20566 6.23648 6.24618 6.35447 6.42142 6.60548 6.65456 6.92994 7.47094 7.87887 8.04780 8.13690 8.29235 8.88577 9.66530 10.03599 11.16908 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.002597 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.695594 B =10779.520423 C =11236.495443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.069 4.069 3 C -0.112 4.112 4 C -0.062 4.062 5 C -0.148 4.148 6 C 0.553 3.447 7 O -0.523 6.523 8 N -0.709 5.709 9 C 0.162 3.838 10 H 0.094 0.906 11 C -0.139 4.139 12 C 0.151 3.849 13 N -0.596 5.596 14 C -0.251 4.251 15 H 0.086 0.914 16 C 0.021 3.979 17 N -0.908 5.908 18 Si 0.879 3.121 19 H -0.291 1.291 20 H -0.302 1.302 21 H -0.270 1.270 22 C 0.098 3.902 23 C 0.082 3.918 24 H 0.049 0.951 25 O -0.554 6.554 26 C 0.132 3.868 27 F -0.102 7.102 28 C 0.052 3.948 29 F -0.124 7.124 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.068 0.932 40 H 0.262 0.738 41 H 0.081 0.919 42 H 0.035 0.965 43 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.391 -5.567 -4.387 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.130 4.130 4 C -0.080 4.080 5 C -0.152 4.152 6 C 0.339 3.661 7 O -0.400 6.400 8 N -0.360 5.360 9 C 0.058 3.942 10 H 0.112 0.888 11 C -0.179 4.179 12 C 0.025 3.975 13 N -0.319 5.319 14 C -0.380 4.380 15 H 0.104 0.896 16 C -0.177 4.177 17 N -0.551 5.551 18 Si 0.709 3.291 19 H -0.219 1.219 20 H -0.230 1.230 21 H -0.195 1.195 22 C -0.029 4.029 23 C 0.020 3.980 24 H 0.067 0.933 25 O -0.360 6.360 26 C 0.110 3.890 27 F -0.080 7.080 28 C 0.032 3.968 29 F -0.102 7.102 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.238 0.762 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.052 0.948 43 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -25.037 -6.770 -4.032 26.247 hybrid contribution 0.375 0.243 -1.415 1.484 sum -24.662 -6.528 -5.447 26.086 Atomic orbital electron populations 1.20841 0.89001 1.04142 1.03562 1.20060 0.97686 0.90972 0.98280 1.20949 0.93645 0.97558 1.00831 1.21350 0.94323 0.96985 0.95379 1.20049 0.94759 0.92338 1.08068 1.17868 0.85962 0.84652 0.77629 1.90861 1.69095 1.31012 1.48997 1.46031 1.08044 1.07856 1.74073 1.21044 0.77551 0.96878 0.98694 0.88770 1.22324 0.98610 1.01721 0.95262 1.20925 0.90547 0.88857 0.97200 1.44214 1.48840 1.25640 1.13184 1.18920 1.09415 1.16465 0.93161 0.89603 1.25276 0.97641 0.97225 0.97604 1.69837 1.32902 1.14985 1.37360 0.87024 0.76605 0.79513 0.85919 1.21921 1.23030 1.19507 1.22061 0.91275 1.00727 0.88847 1.22566 0.96490 0.86492 0.92403 0.93300 1.86369 1.77016 1.16619 1.55947 1.17638 0.87959 0.82288 1.01095 1.91637 1.79728 1.43954 1.92707 1.17355 0.87779 0.82617 1.09083 1.91528 1.79260 1.45329 1.94129 0.89908 0.90600 0.90062 0.83490 0.83605 0.76177 0.92313 0.90624 0.95642 0.91370 0.92782 0.90118 0.94768 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.55 9.82 36.01 0.35 -0.20 16 2 C -0.07 -0.51 5.89 -104.49 -0.62 -1.12 16 3 C -0.11 -0.68 9.67 -39.65 -0.38 -1.07 16 4 C -0.06 -0.48 9.54 -39.18 -0.37 -0.85 16 5 C -0.15 -1.72 5.88 -104.92 -0.62 -2.34 16 6 C 0.55 8.09 7.73 -12.40 -0.10 7.99 16 7 O -0.52 -9.69 15.00 5.30 0.08 -9.61 16 8 N -0.71 -9.46 5.00 -54.76 -0.27 -9.73 16 9 C 0.16 2.61 2.20 -67.89 -0.15 2.46 16 10 H 0.09 1.63 7.57 -51.93 -0.39 1.23 16 11 C -0.14 -2.44 5.51 -26.61 -0.15 -2.59 16 12 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 13 N -0.60 -13.67 2.71 -172.32 -0.47 -14.13 16 14 C -0.25 -6.81 10.03 -15.06 -0.15 -6.96 16 15 H 0.09 2.52 8.05 -52.49 -0.42 2.10 16 16 C 0.02 0.59 5.23 -17.43 -0.09 0.50 16 17 N -0.91 -27.06 13.97 55.49 0.78 -26.29 16 18 Si 0.88 21.53 24.35 -169.99 -4.14 17.39 16 19 H -0.29 -6.72 6.63 56.52 0.37 -6.35 16 20 H -0.30 -7.64 7.11 56.52 0.40 -7.24 16 21 H -0.27 -6.57 6.63 56.52 0.37 -6.20 16 22 C 0.10 1.99 3.85 -3.71 -0.01 1.97 16 23 C 0.08 1.33 3.38 -26.61 -0.09 1.24 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 O -0.55 -8.78 12.08 -35.23 -0.43 -9.20 16 26 C 0.13 1.66 7.29 -38.90 -0.28 1.38 16 27 F -0.10 -1.58 15.46 2.25 0.03 -1.54 16 28 C 0.05 0.54 7.24 -39.42 -0.29 0.25 16 29 F -0.12 -1.36 16.37 2.25 0.04 -1.33 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.38 7.62 -51.93 -0.40 -0.01 16 32 H 0.08 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.15 0.45 8.06 -52.49 -0.42 0.02 16 34 H 0.15 0.82 6.40 -52.49 -0.34 0.49 16 35 H 0.40 4.36 6.29 -40.82 -0.26 4.10 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 1.41 7.61 -51.93 -0.40 1.01 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.37 7.93 -51.93 -0.41 0.96 16 40 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 41 H 0.08 1.75 4.49 -51.93 -0.23 1.52 16 42 H 0.03 0.70 7.09 -51.93 -0.37 0.33 16 43 H 0.38 5.21 9.08 45.56 0.41 5.63 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -33.60 354.26 -6.53 -40.13 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.52 Total: 5.32 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -2.97 Total: 3.65 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.03 Total: -50.16 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.35 Total: -18.81 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.07 Total: -2.87 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.14 Total: 17.39 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -33.60 -6.53 -40.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.936 kcal (2) G-P(sol) polarization free energy of solvation -33.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds