Wall clock time and date at job start Sat Apr 11 2020 05:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38448 * 119.83920 * 2 1 4 4 C 1.37849 * 120.24013 * 179.97438 * 3 2 1 5 5 C 1.39686 * 119.92107 * 359.97438 * 4 3 2 6 6 C 1.47704 * 120.15114 * 179.97438 * 5 4 3 7 7 O 1.21570 * 119.99722 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99986 * 0.02562 * 6 5 4 9 9 C 1.46498 * 119.99898 * 179.97438 * 8 6 5 10 10 H 1.08999 * 109.45931 * 34.97442 * 9 8 6 11 11 C 1.53039 * 109.46087 * 275.00395 * 9 8 6 12 12 C 1.53194 * 109.31275 * 178.62938 * 11 9 8 13 13 N 1.46924 * 108.77561 * 54.63430 * 12 11 9 14 14 C 1.36942 * 120.62968 * 126.11810 * 13 12 11 15 15 H 1.07992 * 119.99875 * 332.70380 * 14 13 12 16 16 C 1.38807 * 119.99880 * 152.70010 * 14 13 12 17 17 N 1.31624 * 120.00086 * 159.47314 * 16 14 13 18 18 Si 1.86803 * 120.00386 * 339.47592 * 16 14 13 19 19 H 1.48500 * 109.47214 * 93.00133 * 18 16 14 20 20 H 1.48499 * 109.47277 * 213.00605 * 18 16 14 21 21 H 1.48503 * 109.46657 * 333.00776 * 18 16 14 22 22 C 1.46926 * 118.73914 * 306.38788 * 13 12 11 23 23 C 1.53042 * 109.44801 * 154.94464 * 9 8 6 24 24 H 1.09004 * 109.49082 * 301.35996 * 23 9 8 25 25 O 1.42888 * 109.50144 * 61.42718 * 23 9 8 26 26 C 1.39762 * 119.69192 * 0.25793 * 5 4 3 27 27 F 1.35099 * 120.12094 * 179.72424 * 26 5 4 28 28 C 1.38381 * 119.84421 * 180.02562 * 2 1 3 29 29 F 1.35100 * 119.96178 * 0.02577 * 28 2 1 30 30 H 1.08997 * 109.46928 * 90.00120 * 1 2 3 31 31 H 1.09004 * 109.46580 * 209.99773 * 1 2 3 32 32 H 1.08994 * 109.47472 * 329.99835 * 1 2 3 33 33 H 1.07996 * 119.88189 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.03646 * 179.97438 * 4 3 2 35 35 H 0.97003 * 120.00214 * 0.02562 * 8 6 5 36 36 H 1.08995 * 109.50155 * 58.67817 * 11 9 8 37 37 H 1.09006 * 109.52485 * 298.59585 * 11 9 8 38 38 H 1.09007 * 109.58516 * 294.84393 * 12 11 9 39 39 H 1.09000 * 109.58479 * 174.42470 * 12 11 9 40 40 H 0.96999 * 120.00261 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58351 * 173.39714 * 22 13 12 42 42 H 1.08994 * 109.58658 * 293.82647 * 22 13 12 43 43 H 0.96701 * 114.00250 * 180.02562 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1959 1.2009 0.0000 4 6 3.5744 1.2106 0.0005 5 6 4.2796 0.0048 0.0016 6 6 5.7567 0.0092 0.0016 7 8 6.3676 -1.0418 0.0021 8 7 6.4270 1.1784 0.0011 9 6 7.8920 1.1827 0.0017 10 1 8.2578 0.3413 -0.5867 11 6 8.4017 1.0594 1.4394 12 6 9.9333 1.0298 1.4332 13 7 10.4263 2.2146 0.7178 14 6 11.3274 3.0608 1.3072 15 1 11.3594 3.1512 2.3829 16 6 12.1996 3.8021 0.5221 17 7 12.7695 4.8827 1.0119 18 14 12.5644 3.2663 -1.2299 19 1 11.6354 3.9548 -2.1617 20 1 13.9646 3.6212 -1.5747 21 1 12.3832 1.7970 -1.3460 22 6 9.9296 2.4777 -0.6397 23 6 8.3979 2.4911 -0.6102 24 1 8.0149 2.5897 -1.6259 25 8 7.9457 3.5930 0.1792 26 6 3.5811 -1.2057 -0.0033 27 9 4.2544 -2.3770 -0.0079 28 6 2.1957 -1.2003 -0.0005 29 9 1.5163 -2.3680 -0.0016 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6514 2.1336 0.0004 34 1 4.1084 2.1493 0.0001 35 1 5.9395 2.0170 0.0011 36 1 8.0219 0.1387 1.8824 37 1 8.0567 1.9131 2.0228 38 1 10.2793 0.1278 0.9283 39 1 10.3032 1.0418 2.4585 40 1 13.3787 5.4009 0.4632 41 1 10.2969 3.4451 -0.9821 42 1 10.2752 1.6938 -1.3135 43 1 8.2297 4.4563 -0.1512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090584660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:06 Heat of formation + Delta-G solvation = -143.571323 kcal Electronic energy + Delta-G solvation = -29936.647204 eV Core-core repulsion = 25424.705521 eV Total energy + Delta-G solvation = -4511.941683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.60843 -49.69132 -41.49223 -40.14259 -39.22563 -36.62830 -35.86374 -34.34750 -33.75341 -31.91895 -31.41966 -30.87887 -28.75637 -26.80727 -24.75948 -24.03764 -23.90234 -23.25009 -21.70637 -21.24121 -19.64811 -19.07750 -18.54492 -18.21928 -17.59273 -17.57935 -17.38813 -17.25250 -16.63209 -16.25752 -16.05087 -15.89995 -15.72271 -15.60922 -15.49512 -15.11193 -14.94095 -14.49381 -14.32748 -14.27801 -14.14521 -13.97901 -13.46888 -13.33237 -13.04947 -12.80447 -12.74438 -12.72608 -12.63610 -12.43062 -12.18078 -12.01558 -11.87280 -11.41709 -11.16428 -10.93011 -10.62200 -10.24390 -9.92681 -9.90354 -8.92890 -8.14004 -5.46061 -0.61086 -0.20555 1.27002 1.44610 1.52058 1.55904 1.85476 2.40144 2.41166 2.62615 3.01530 3.20642 3.28397 3.30355 3.39747 3.54637 3.67348 3.73076 3.87323 3.92530 4.12857 4.22715 4.34933 4.41238 4.51300 4.57207 4.70597 4.71313 4.75061 4.76457 4.79774 4.88050 4.94708 4.96162 5.01737 5.14485 5.16772 5.32728 5.42074 5.59705 5.86470 6.13986 6.42247 6.83748 6.94490 7.07129 7.61168 8.01335 9.05883 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.026617 B = 0.002597 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.695594 B =10779.520423 C =11236.495443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.055 4.055 3 C -0.093 4.093 4 C -0.048 4.048 5 C -0.166 4.166 6 C 0.553 3.447 7 O -0.571 6.571 8 N -0.693 5.693 9 C 0.166 3.834 10 H 0.084 0.916 11 C -0.124 4.124 12 C 0.147 3.853 13 N -0.608 5.608 14 C -0.241 4.241 15 H 0.048 0.952 16 C -0.032 4.032 17 N -0.955 5.955 18 Si 0.943 3.057 19 H -0.263 1.263 20 H -0.315 1.315 21 H -0.268 1.268 22 C 0.088 3.912 23 C 0.097 3.903 24 H 0.087 0.913 25 O -0.559 6.559 26 C 0.097 3.903 27 F -0.132 7.132 28 C 0.036 3.964 29 F -0.134 7.134 30 H 0.097 0.903 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.194 0.806 34 H 0.174 0.826 35 H 0.418 0.582 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.262 0.738 41 H 0.070 0.930 42 H 0.040 0.960 43 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.820 -4.086 -6.171 29.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.056 4.056 3 C -0.110 4.110 4 C -0.066 4.066 5 C -0.171 4.171 6 C 0.340 3.660 7 O -0.451 6.451 8 N -0.345 5.345 9 C 0.061 3.939 10 H 0.102 0.898 11 C -0.165 4.165 12 C 0.021 3.979 13 N -0.332 5.332 14 C -0.371 4.371 15 H 0.065 0.935 16 C -0.226 4.226 17 N -0.602 5.602 18 Si 0.772 3.228 19 H -0.189 1.189 20 H -0.244 1.244 21 H -0.193 1.193 22 C -0.037 4.037 23 C 0.035 3.965 24 H 0.105 0.895 25 O -0.366 6.366 26 C 0.075 3.925 27 F -0.110 7.110 28 C 0.015 3.985 29 F -0.113 7.113 30 H 0.115 0.885 31 H 0.087 0.913 32 H 0.128 0.872 33 H 0.211 0.789 34 H 0.191 0.809 35 H 0.257 0.743 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -28.535 -5.276 -5.835 29.599 hybrid contribution 1.323 -0.207 -0.760 1.540 sum -27.212 -5.483 -6.594 28.531 Atomic orbital electron populations 1.20987 0.86720 1.05231 1.04725 1.20520 0.99249 0.90083 0.95777 1.21476 0.92931 0.98690 0.97928 1.21704 0.95240 0.96275 0.93419 1.19876 0.92894 0.93535 1.10750 1.18317 0.87286 0.83990 0.76358 1.90835 1.70371 1.32699 1.51228 1.45744 1.06791 1.08394 1.73591 1.20804 0.79219 0.96739 0.97165 0.89762 1.22105 0.96497 1.01267 0.96583 1.21004 0.92319 0.88078 0.96450 1.44268 1.48654 1.25927 1.14321 1.18776 1.10167 1.16310 0.91803 0.93452 1.25835 0.97810 0.97171 1.01827 1.69965 1.34398 1.16519 1.39279 0.85981 0.75984 0.79168 0.81670 1.18906 1.24399 1.19251 1.22200 0.94365 1.00137 0.87039 1.22367 0.93275 0.86504 0.94335 0.89493 1.86348 1.76724 1.17176 1.56382 1.18081 0.89049 0.81832 1.03502 1.91548 1.80508 1.45642 1.93333 1.17625 0.87091 0.83484 1.10262 1.91495 1.79227 1.46221 1.94356 0.88508 0.91308 0.87243 0.78882 0.80872 0.74346 0.92274 0.91499 0.95121 0.92458 0.92932 0.91234 0.94233 0.76039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.63 9.82 71.24 0.70 0.07 16 2 C -0.06 -0.62 5.89 -19.78 -0.12 -0.74 16 3 C -0.09 -0.66 9.67 22.23 0.22 -0.44 16 4 C -0.05 -0.55 9.54 22.53 0.21 -0.34 16 5 C -0.17 -3.65 5.88 -20.06 -0.12 -3.77 16 6 C 0.55 15.72 7.73 86.75 0.67 16.40 16 7 O -0.57 -21.64 15.00 -3.94 -0.06 -21.70 16 8 N -0.69 -16.92 5.00 -445.42 -2.23 -19.15 16 9 C 0.17 5.03 2.20 45.02 0.10 5.13 16 10 H 0.08 2.80 7.57 -2.39 -0.02 2.79 16 11 C -0.12 -4.30 5.51 30.67 0.17 -4.13 16 12 C 0.15 5.93 6.52 86.36 0.56 6.50 16 13 N -0.61 -27.73 2.71 -699.09 -1.89 -29.62 16 14 C -0.24 -13.34 10.03 84.03 0.84 -12.49 16 15 H 0.05 2.93 8.05 -2.91 -0.02 2.90 16 16 C -0.03 -1.79 5.23 84.86 0.44 -1.35 16 17 N -0.96 -58.29 13.97 21.65 0.30 -57.99 16 18 Si 0.94 44.42 24.35 68.60 1.67 46.09 16 19 H -0.26 -11.10 6.63 99.48 0.66 -10.44 16 20 H -0.31 -15.41 7.11 99.48 0.71 -14.70 16 21 H -0.27 -12.37 6.63 99.48 0.66 -11.71 16 22 C 0.09 3.41 3.85 86.36 0.33 3.74 16 23 C 0.10 2.83 3.38 30.67 0.10 2.93 16 24 H 0.09 1.99 8.14 -2.38 -0.02 1.98 16 25 O -0.56 -16.05 12.08 -148.98 -1.80 -17.85 16 26 C 0.10 2.46 7.29 22.71 0.17 2.62 16 27 F -0.13 -4.35 15.46 44.97 0.70 -3.65 16 28 C 0.04 0.70 7.24 22.38 0.16 0.87 16 29 F -0.13 -2.97 16.37 44.97 0.74 -2.23 16 30 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.07 0.51 7.62 -2.38 -0.02 0.49 16 32 H 0.11 0.01 8.08 -2.39 -0.02 -0.01 16 33 H 0.19 -0.30 8.06 -2.91 -0.02 -0.32 16 34 H 0.17 1.01 6.40 -2.91 -0.02 1.00 16 35 H 0.42 7.49 6.29 -92.71 -0.58 6.90 16 36 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.07 2.43 7.61 -2.38 -0.02 2.41 16 38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 40 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 41 H 0.07 2.84 4.49 -2.39 -0.01 2.83 16 42 H 0.04 1.51 7.09 -2.39 -0.02 1.49 16 43 H 0.39 9.55 9.08 -74.06 -0.67 8.88 16 Total: -1.00 -77.98 354.26 1.61 -76.37 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -0.26 Total: 14.74 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: 4.45 Total: 14.99 kcal Atomic # 7 Polarization: -102.94 SS G_CDS: -3.82 Total: -106.76 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -1.86 Total: -39.55 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 1.43 Total: -5.88 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.09 kcal Total: -77.98 1.61 -76.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.198 kcal (2) G-P(sol) polarization free energy of solvation -77.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds