Wall clock time and date at job start Sat Apr 11 2020 05:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38444 * 119.84490 * 2 1 4 4 C 1.37842 * 120.24484 * 179.76726 * 3 2 1 5 5 C 1.39685 * 119.92180 * 0.48931 * 4 3 2 6 6 C 1.47701 * 120.15331 * 179.76725 * 5 4 3 7 7 O 1.21574 * 119.99687 * 179.72441 * 6 5 4 8 8 N 1.34774 * 120.00225 * 359.72517 * 6 5 4 9 9 C 1.46500 * 120.00269 * 180.02562 * 8 6 5 10 10 H 1.08998 * 109.45675 * 35.02185 * 9 8 6 11 11 C 1.53044 * 109.45867 * 275.06712 * 9 8 6 12 12 C 1.53187 * 109.31343 * 178.61032 * 11 9 8 13 13 N 1.46922 * 108.77365 * 54.63696 * 12 11 9 14 14 C 1.36942 * 120.63458 * 126.41218 * 13 12 11 15 15 H 1.08001 * 120.00298 * 207.67418 * 14 13 12 16 16 C 1.38814 * 119.99510 * 27.67494 * 14 13 12 17 17 N 1.31612 * 120.00159 * 17.35496 * 16 14 13 18 18 Si 1.86799 * 119.99811 * 197.35789 * 16 14 13 19 19 H 1.48499 * 109.47251 * 59.99530 * 18 16 14 20 20 H 1.48502 * 109.47290 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47131 * 300.00012 * 18 16 14 22 22 C 1.46929 * 118.73844 * 306.39081 * 13 12 11 23 23 C 1.53032 * 109.46346 * 154.99780 * 9 8 6 24 24 H 1.09004 * 109.49747 * 61.40309 * 23 9 8 25 25 O 1.42900 * 109.49978 * 301.33688 * 23 9 8 26 26 C 1.39759 * 119.68720 * 359.49334 * 5 4 3 27 27 F 1.35109 * 120.11994 * 180.23404 * 26 5 4 28 28 C 1.38382 * 119.84106 * 179.97438 * 2 1 3 29 29 F 1.35102 * 119.96707 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46811 * 270.01890 * 1 2 3 31 31 H 1.08997 * 109.47535 * 30.01957 * 1 2 3 32 32 H 1.09002 * 109.47053 * 150.02407 * 1 2 3 33 33 H 1.08006 * 119.87429 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.03908 * 180.25819 * 4 3 2 35 35 H 0.97003 * 120.00045 * 359.97438 * 8 6 5 36 36 H 1.08997 * 109.49719 * 298.56881 * 11 9 8 37 37 H 1.09005 * 109.49393 * 58.66144 * 11 9 8 38 38 H 1.08998 * 109.58597 * 174.41805 * 12 11 9 39 39 H 1.08996 * 109.59152 * 294.84911 * 12 11 9 40 40 H 0.97003 * 119.99810 * 180.02562 * 17 16 14 41 41 H 1.09006 * 109.58472 * 293.81826 * 22 13 12 42 42 H 1.09002 * 109.58549 * 173.39992 * 22 13 12 43 43 H 0.96695 * 114.00444 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1960 1.2008 0.0000 4 6 3.5743 1.2105 0.0048 5 6 4.2796 0.0047 -0.0006 6 6 5.7566 0.0091 -0.0006 7 8 6.3675 -1.0420 -0.0003 8 7 6.4270 1.1782 -0.0010 9 6 7.8920 1.1826 -0.0016 10 1 8.2574 0.3420 -0.5915 11 6 8.4028 1.0568 1.4355 12 6 9.9344 1.0268 1.4281 13 7 10.4271 2.2126 0.7142 14 6 11.3335 3.0543 1.3019 15 1 11.3634 4.0968 1.0210 16 6 12.2137 2.5677 2.2586 17 7 12.4232 1.2724 2.3618 18 14 13.1008 3.7511 3.3995 19 1 12.1041 4.5203 4.1871 20 1 13.9776 2.9859 4.3220 21 1 13.9264 4.6882 2.5961 22 6 9.9293 2.4780 -0.6425 23 6 8.3978 2.4917 -0.6118 24 1 8.0531 3.3314 -0.0084 25 8 7.8953 2.6229 -1.9431 26 6 3.5810 -1.2058 -0.0002 27 9 4.2543 -2.3771 -0.0006 28 6 2.1956 -1.2003 0.0005 29 9 1.5162 -2.3681 0.0016 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6514 2.1335 -0.0004 34 1 4.1084 2.1491 0.0090 35 1 5.9396 2.0169 -0.0017 36 1 8.0585 1.9099 2.0200 37 1 8.0230 0.1355 1.8773 38 1 10.3051 1.0372 2.4531 39 1 10.2798 0.1256 0.9215 40 1 13.0380 0.9324 3.0306 41 1 10.2743 1.6951 -1.3179 42 1 10.2967 3.4458 -0.9837 43 1 8.1763 3.4321 -2.3917 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090584663.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:59:14 Heat of formation + Delta-G solvation = -125.872307 kcal Electronic energy + Delta-G solvation = -29727.760306 eV Core-core repulsion = 25216.586110 eV Total energy + Delta-G solvation = -4511.174196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.66609 -48.70290 -40.29227 -38.95847 -37.80568 -35.44919 -34.45410 -33.33107 -31.93045 -30.75756 -30.04980 -28.73531 -27.82404 -25.19391 -23.29981 -23.17415 -22.39129 -21.85877 -20.50907 -19.68554 -18.44878 -17.67407 -17.26349 -17.10572 -16.64924 -16.56468 -16.30632 -15.71603 -15.21608 -14.97234 -14.83456 -14.59824 -14.52900 -14.15019 -13.94642 -13.85807 -13.65899 -13.49211 -13.22761 -12.81885 -12.72231 -12.35127 -12.24612 -12.16477 -11.95584 -11.91801 -11.59968 -11.14257 -10.88414 -10.71588 -10.38086 -10.30973 -10.00507 -9.92501 -9.77570 -9.50641 -9.26717 -9.11144 -8.81026 -8.48376 -6.80532 -5.87112 -3.31514 0.21587 0.56162 2.51840 3.01127 3.33410 3.38516 3.39806 3.40557 3.48370 3.99155 4.16420 4.20493 4.32883 4.45155 4.49578 4.57728 4.90826 5.08306 5.11390 5.24635 5.29059 5.36642 5.44911 5.49046 5.49659 5.51827 5.62659 5.72445 5.74664 5.92414 6.06600 6.24182 6.30584 6.44128 6.47322 6.63268 6.73799 6.78475 7.25975 7.56235 7.60418 7.70191 7.86857 8.27988 8.35084 9.10468 9.72938 10.28631 11.21441 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.021443 B = 0.002503 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.467640 B =11182.831682 C =11488.695376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.070 4.070 3 C -0.112 4.112 4 C -0.062 4.062 5 C -0.145 4.145 6 C 0.554 3.446 7 O -0.520 6.520 8 N -0.706 5.706 9 C 0.163 3.837 10 H 0.090 0.910 11 C -0.147 4.147 12 C 0.171 3.829 13 N -0.588 5.588 14 C -0.262 4.262 15 H 0.067 0.933 16 C 0.006 3.994 17 N -0.898 5.898 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.121 3.879 23 C 0.080 3.920 24 H 0.057 0.943 25 O -0.571 6.571 26 C 0.132 3.868 27 F -0.102 7.102 28 C 0.052 3.948 29 F -0.124 7.124 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.395 0.605 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.025 0.975 40 H 0.257 0.743 41 H 0.030 0.970 42 H 0.061 0.939 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.815 2.744 -5.295 24.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.072 4.072 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.149 4.149 6 C 0.339 3.661 7 O -0.397 6.397 8 N -0.356 5.356 9 C 0.059 3.941 10 H 0.108 0.892 11 C -0.187 4.187 12 C 0.045 3.955 13 N -0.312 5.312 14 C -0.391 4.391 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.542 5.542 18 Si 0.734 3.266 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.007 4.007 23 C 0.019 3.981 24 H 0.075 0.925 25 O -0.376 6.376 26 C 0.110 3.890 27 F -0.080 7.080 28 C 0.032 3.968 29 F -0.103 7.103 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.230 0.770 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.043 0.957 40 H 0.067 0.933 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -23.477 1.217 -5.038 24.042 hybrid contribution 0.576 1.054 0.485 1.295 sum -22.901 2.271 -4.553 23.459 Atomic orbital electron populations 1.20829 0.89059 1.04050 1.03535 1.20035 0.97627 0.90981 0.98534 1.20924 0.93631 0.97500 1.00997 1.21309 0.94259 0.96931 0.95588 1.20092 0.94914 0.92306 1.07594 1.17807 0.85831 0.84713 0.77733 1.90872 1.69036 1.30980 1.48806 1.45962 1.08087 1.07511 1.74086 1.21080 0.77116 0.98061 0.97808 0.89166 1.22621 1.01051 1.01264 0.93810 1.20839 0.86511 0.88412 0.99760 1.44047 1.48664 1.28209 1.10266 1.19110 1.10452 0.90169 1.19354 0.91548 1.25075 0.97040 0.95801 1.01451 1.70023 1.37249 1.11476 1.35427 0.86342 0.79218 0.80217 0.80792 1.20948 1.21542 1.20817 1.21525 0.90173 0.99719 0.89277 1.22780 0.96722 0.96243 0.82335 0.92511 1.86483 1.75830 1.46682 1.28567 1.17652 0.87951 0.82347 1.01050 1.91645 1.79730 1.43910 1.92685 1.17356 0.87780 0.82599 1.09078 1.91526 1.79263 1.45351 1.94136 0.89938 0.90141 0.90643 0.83586 0.83779 0.77011 0.92240 0.91817 0.88775 0.95723 0.93323 0.95252 0.92086 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.82 36.01 0.35 -0.25 16 2 C -0.07 -0.56 5.89 -104.49 -0.62 -1.18 16 3 C -0.11 -0.75 9.67 -39.65 -0.38 -1.13 16 4 C -0.06 -0.53 9.54 -39.19 -0.37 -0.90 16 5 C -0.14 -1.84 5.88 -104.92 -0.62 -2.46 16 6 C 0.55 8.96 7.73 -12.40 -0.10 8.87 16 7 O -0.52 -10.70 15.00 5.30 0.08 -10.62 16 8 N -0.71 -10.30 4.87 -54.76 -0.27 -10.57 16 9 C 0.16 2.88 2.12 -67.89 -0.14 2.74 16 10 H 0.09 1.86 7.58 -51.93 -0.39 1.47 16 11 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 12 C 0.17 4.05 5.31 -3.72 -0.02 4.03 16 13 N -0.59 -14.16 2.99 -172.32 -0.52 -14.67 16 14 C -0.26 -6.88 9.59 -15.06 -0.14 -7.03 16 15 H 0.07 1.69 7.89 -52.49 -0.41 1.27 16 16 C 0.01 0.16 4.91 -17.43 -0.09 0.07 16 17 N -0.90 -25.67 11.19 55.49 0.62 -25.05 16 18 Si 0.90 21.06 29.59 -169.99 -5.03 16.03 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C 0.12 2.39 6.14 -3.71 -0.02 2.37 16 23 C 0.08 1.31 3.14 -26.62 -0.08 1.22 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 25 O -0.57 -8.10 13.16 -35.23 -0.46 -8.56 16 26 C 0.13 1.80 7.29 -38.90 -0.28 1.51 16 27 F -0.10 -1.69 15.46 2.25 0.03 -1.66 16 28 C 0.05 0.58 7.24 -39.42 -0.29 0.30 16 29 F -0.12 -1.46 16.37 2.25 0.04 -1.42 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.07 0.41 7.62 -51.93 -0.40 0.02 16 33 H 0.15 0.50 8.06 -52.48 -0.42 0.07 16 34 H 0.14 0.87 6.40 -52.49 -0.34 0.53 16 35 H 0.40 4.44 6.63 -40.82 -0.27 4.17 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.09 2.48 6.04 -51.93 -0.31 2.16 16 39 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 43 H 0.37 3.70 9.08 45.56 0.41 4.12 16 LS Contribution 362.35 15.07 5.46 5.46 Total: -1.00 -33.41 362.35 -7.63 -41.04 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -4.64 Total: 4.88 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: -2.95 Total: 5.15 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.16 Total: -50.29 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.38 Total: -19.18 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.41 -7.63 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090584663.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.836 kcal (2) G-P(sol) polarization free energy of solvation -33.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds